TCONS_00037287 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037287
Unique NameTCONS_00037287
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length378

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037287 ID=TCONS_00037287|Name=TCONS_00037287|organism=Clytia hemisphaerica|type=transcript|length=378bp
CTCGAAACATGATTTATGTTGAAAGTCCCTTTGAAAATAATGTTACAAAG
CAAGCTTTTAGATACAGGAAGACTTTCAGCATAAGGGGAAAGTTATCTTC
TCTTCCGTCATCTAAAATGCACAGATTTCGTGGTGTGTCAGTAAAGTTTa
cggaaaataaaaacaaaaagaaatgtgGTGAAGTTGGAGTAACCTTGAGC
TGTGCAGCATTTAACTCAAGTGGATATTACACAAGGAATCTTGCCATTAC
AGAAACAGAcatgtagtgttttttttgttgttgtttataGTTTATGGGAT
TAATGTTTGAAGGTAGTCGGTCAGGGGACACAAACAGAACATATATTGAT
GGTCGCCTTAGCCAGGCGTTCACAATCG
Run BLAST on NCBI

transcript from alignment at sc0001608:34693..35070

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037287 ID=TCONS_00037287|Name=TCONS_00037287|organism=Clytia hemisphaerica|type=transcript|length=378bp|location=Sequence derived from alignment at sc0001608:34693..35070 (Clytia hemisphaerica)
CGATTGTGAACGCCTGGCTAAGGCGACCATCAATATATGTTCTGTTTGTG
TCCCCTGACCGACTACCTTCAAACATTAATCCCATAAACtataaacaaca
acaaaaaaaacactacatgTCTGTTTCTGTAATGGCAAGATTCCTTGTGT
AATATCCACTTGAGTTAAATGCTGCACAGCTCAAGGTTACTCCAACTTCA
CcacatttctttttgtttttattttccgtAAACTTTACTGACACACCACG
AAATCTGTGCATTTTAGATGACGGAAGAGAAGATAACTTTCCCCTTATGC
TGAAAGTCTTCCTGTATCTAAAAGCTTGCTTTGTAACATTATTTTCAAAG
GGACTTTCAACATAAATCATGTTTCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022080XLOC_022080Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037287-exon-sc0001608-1491911889:34693..35070TCONS_00037287-exon-sc0001608-1491911889:34693..35070Clytia hemisphaericaexon
TCONS_00037287-exon-sc0001608-1510915933:34693..35070TCONS_00037287-exon-sc0001608-1510915933:34693..35070Clytia hemisphaericaexon
TCONS_00037287-exon-sc0001608-1575043694:34693..35070TCONS_00037287-exon-sc0001608-1575043694:34693..35070Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001608supercontigsc0001608:34693..35070 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.25956	0	0	0	0.283099	0.447417	0	0.505345	0.176902	0	0	0	0	0.144993	0	0	0	0	0.223158	0	0	0	0	0	0.676169	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037287 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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