TCONS_00037285 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037285
Unique NameTCONS_00037285
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length516

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037285 ID=TCONS_00037285|Name=TCONS_00037285|organism=Clytia hemisphaerica|type=transcript|length=516bp
CATGTATTTAATTGCAGACATGTTCTCCTTGTTCCGAGCCAAATCTTCGG
CAGTAATGGTGGTTGATATCATTTCTATTTCACTCAAAGCGTCTTCAGGA
GATTTGTTTTCATCCATCAAACACTTTTTAGCCGTGTTGATTTGTGACTT
GTTAAAAACATCATTTGGATCGATCGACAATTTACTTTTCGTAAACGACG
AAGACGAGGTCGTCGGCGGTGGTAAATATGTCGATAATGATAATGGTGTT
GTTGCTGGttgaggtggtggaggtggtaaTTTTAACGATGTTGAAGATGA
AACTGTCGTCAAAGGTAATGGTGGTTTAAATTCGAGAAAATCGGTCGCTT
TTGACTGGTGTGTCATCGTTGGTGCCAAACAGTGTGCTACGAAAGAAGAA
GCATCCACACGTTCATCTCCCAACATGTAAGTAGATGCTATTGTTGTGGA
CAGAATACATTCCAAAGAAATTGGTGCTGATTCAACCAAGTGAGGAGTTA
GAGTTGGCATTgtctg
Run BLAST on NCBI

protein sequence of TCONS_00037285-protein

>TCONS_00037285-protein ID=TCONS_00037285-protein|Name=TCONS_00037285-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
QTMPTLTPHLVESAPISLECILSTTIASTYMLGDERVDASSFVAHCLAPT
MTHQSKATDFLEFKPPLPLTTVSSSTSLKLPPPPPQPATTPLSLSTYLPP
PTTSSSSFTKSKLSIDPNDVFNKSQINTAKKCLMDENKSPEDALSEIEMI
STTITAEDLARNKENMSAIKYM
Run BLAST on NCBI

transcript from alignment at sc0001607:21362..21877

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037285 ID=TCONS_00037285|Name=TCONS_00037285|organism=Clytia hemisphaerica|type=transcript|length=516bp|location=Sequence derived from alignment at sc0001607:21362..21877 (Clytia hemisphaerica)
cagacAATGCCAACTCTAACTCCTCACTTGGTTGAATCAGCACCAATTTC
TTTGGAATGTATTCTGTCCACAACAATAGCATCTACTTACATGTTGGGAG
ATGAACGTGTGGATGCTTCTTCTTTCGTAGCACACTGTTTGGCACCAACG
ATGACACACCAGTCAAAAGCGACCGATTTTCTCGAATTTAAACCACCATT
ACCTTTGACGACAGTTTCATCTTCAACATCGTTAAAAttaccacctccac
cacctcaaCCAGCAACAACACCATTATCATTATCGACATATTTACCACCG
CCGACGACCTCGTCTTCGTCGTTTACGAAAAGTAAATTGTCGATCGATCC
AAATGATGTTTTTAACAAGTCACAAATCAACACGGCTAAAAAGTGTTTGA
TGGATGAAAACAAATCTCCTGAAGACGCTTTGAGTGAAATAGAAATGATA
TCAACCACCATTACTGCCGAAGATTTGGCTCGGAACAAGGAGAACATGTC
TGCAATTAAATACATG

Coding sequence (CDS) from alignment at sc0001607:21362..21877

>TCONS_00037285 ID=TCONS_00037285|Name=TCONS_00037285|organism=Clytia hemisphaerica|type=CDS|length=516bp|location=Sequence derived from alignment at sc0001607:21362..21877 (Clytia hemisphaerica)
cagacAATGCCAACTCTAACTCCTCACTTGGTTGAATCAGCACCAATTTC
TTTGGAATGTATTCTGTCCACAACAATAGCATCTACTTACATGTTGGGAG
ATGAACGTGTGGATGCTTCTTCTTTCGTAGCACACTGTTTGGCACCAACG
ATGACACACCAGTCAAAAGCGACCGATTTTCTCGAATTTAAACCACCATT
ACCTTTGACGACAGTTTCATCTTCAACATCGTTAAAAttaccacctccac
cacctcaaCCAGCAACAACACCATTATCATTATCGACATATTTACCACCG
CCGACGACCTCGTCTTCGTCGTTTACGAAAAGTAAATTGTCGATCGATCC
AAATGATGTTTTTAACAAGTCACAAATCAACACGGCTAAAAAGTGTTTGA
TGGATGAAAACAAATCTCCTGAAGACGCTTTGAGTGAAATAGAAATGATA
TCAACCACCATTACTGCCGAAGATTTGGCTCGGAACAAGGAGAACATGTC
TGCAATTAAATACATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022078XLOC_022078Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037285-exon-sc0001607-1491911889:21362..21877TCONS_00037285-exon-sc0001607-1491911889:21362..21877Clytia hemisphaericaexon
TCONS_00037285-exon-sc0001607-1510915933:21362..21877TCONS_00037285-exon-sc0001607-1510915933:21362..21877Clytia hemisphaericaexon
TCONS_00037285-exon-sc0001607-1575043694:21362..21877TCONS_00037285-exon-sc0001607-1575043694:21362..21877Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037285-proteinTCONS_00037285-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001607supercontigsc0001607:21362..21877 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.297148	0	0	0	0.11708	0	0.0768571	0	0	0.0704206	0	0	0	0	0	0	0.132502	0	0	0.110734	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037285 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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