TCONS_00037283 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037283
Unique NameTCONS_00037283
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1225

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037283 ID=TCONS_00037283|Name=TCONS_00037283|organism=Clytia hemisphaerica|type=transcript|length=1225bp
AAATTTACATACAttgctttgtttttttctattttagaatGTACCACACC
CACAAAAAACTCAAACTACAAGAGTTACAAGATCAGTGCTAGCTGGTTAT
ATAGACGGTGTTGGTGAGGAGTTCACTTCAAACAATAACCGTCAGTATTT
TGATGTCGATATAAAGATAAGTTCCGTTCAAAAAAGGAAGGTACGTGTGA
TGTCCGACAAAACGTATAGCCATGAATATTTCGAGTCACTTTGTGAACAA
AAGGAAGCTGTTCTTTTAAGCAACGTGTCACCTATCAAGTCAGGAAGAAG
TTTCTTCAACCCCTCAATAAAAGGAACAGAGCTGTCTCCGCTCCCAAAac
acaatttgaattttgattctGACGAACTTAATGTCATTACTGTCACTGAT
ATTAATGCCATTCAACCAACTGGCACGTTTAAGATACAAGGCCAAATTCA
ATGGGTGGAATCAAGTCGTCAAGTTAATGTTAGTGGTAACAAAAGAACTA
TCAGAGaagcaaaatttcttgataagacCGGTTGCATGGATTTGTCAGTT
TGGGGCACAGAATTGATTTCCTCGTTAAAGCATGAAACAACTTACATCTT
CACAAACATTGCAACCAATTTTTTCAAACACATGCGGCTGACTACCACAT
TTACTACTACATATAGTCAAATTGAGTCTGATGAAGAATACAGTTGGCAA
GGTGTCACCATGAAGGATCACATCGTTCTTTCATGTCCTTAAATTGTCAC
TGCCACAGTAGAGAAATTTATCACATGTCGTTTTGCTAAATGTCAGAAGA
AAATTGTGTACAATGAATCACTTACAAAAAGTTTTGTACTATGCCCACAT
TGTAACAAAAACATGAATCCTAAAAAGTGCTCGCCAAATTATATAGTTGA
CCTTGTTGTTGAAtacaaggaaaaacaaattcagCTGACTATATTTCCTC
AGCTTGTAAGAGAAATGAAATGGAACGAAGATAACCTTATTGAGGAATTG
TTGAACCTGGATGATGTTGATATTACCTATaacaggaaaaaaattattac
aaaaatttCAGAACATCAAGACTTAGTCTGACAAAAAGGCCCTAATATTT
TAACTATTTTATCAATTAATTTCTCTGATCTTCTGCTTATTTACGTTTGA
CTTTAGCTTTTGAACATTTATTATTTTAAACAACAATTAAGCACCAAAGA
GTATCGTTTACTAAATGCACGTCTG
Run BLAST on NCBI

transcript from alignment at sc0001607:39182..40910+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037283 ID=TCONS_00037283|Name=TCONS_00037283|organism=Clytia hemisphaerica|type=transcript|length=1729bp|location=Sequence derived from alignment at sc0001607:39182..40910+ (Clytia hemisphaerica)
AAATTTACATACAttgctttgtttttttctattttagaatGTACCACACC
CACAAAAAACTCAAACTACAAGAGTTACAAGATCAGGCAAGTAAGTAATC
AATTGGTATCATCCATAATGATATGGCAATTTGTTAGAGTAAAGCCAGGA
AAGACAACATTacgatttctttttcttttatgttACTTTTAAGCTGTGGC
TAAAATGTTAGAAAAAGTCGCATATATAACAACACCAAGGCCAAATTTTA
ATCACACATGTGTGGAATTATAACATTATTGAATATAAGGTAGTTGCACC
TAATGTGAACACGCTTCTAATACTGTACTATTGTCTCGCCATTATGTACA
TCTCTTATCCAAGCAACTATCTATGTATTTAATaatctttttgtaaaatt
tcagaGCTTTTTAAAGGAAGCAGTGTCTACAGAAAAAAAGTGTCCACATT
AGAACCACCTACCTTATCAATGATTAAAATTCCACATGTTCAAGCTGGTT
CAAGCTCAAATTACTCTCCTTTCTGCTATTTATCACGTCTCTTGAGATCT
TCCCTCTTTAATTATACTAAGCAAATCTTTCTCATTTCAGTGCTAGCTGG
TTATATAGACGGTGTTGGTGAGGAGTTCACTTCAAACAATAACCGTCAGT
ATTTTGATGTCGATATAAAGATAAGTTCCGTTCAAAAAAGGAAGGTACGT
GTGATGTCCGACAAAACGTATAGCCATGAATATTTCGAGTCACTTTGTGA
ACAAAAGGAAGCTGTTCTTTTAAGCAACGTGTCACCTATCAAGTCAGGAA
GAAGTTTCTTCAACCCCTCAATAAAAGGAACAGAGCTGTCTCCGCTCCCA
AAacacaatttgaattttgattctGACGAACTTAATGTCATTACTGTCAC
TGATATTAATGCCATTCAACCAACTGGCACGTTTAAGATACAAGGCCAAA
TTCAATGGGTGGAATCAAGTCGTCAAGTTAATGTTAGTGGTAACAAAAGA
ACTATCAGAGaagcaaaatttcttgataagacCGGTTGCATGGATTTGTC
AGTTTGGGGCACAGAATTGATTTCCTCGTTAAAGCATGAAACAACTTACA
TCTTCACAAACATTGCAACCAATTTTTTCAAACACATGCGGCTGACTACC
ACATTTACTACTACATATAGTCAAATTGAGTCTGATGAAGAATACAGTTG
GCAAGGTGTCACCATGAAGGATCACATCGTTCTTTCATGTCCTTAAATTG
TCACTGCCACAGTAGAGAAATTTATCACATGTCGTTTTGCTAAATGTCAG
AAGAAAATTGTGTACAATGAATCACTTACAAAAAGTTTTGTACTATGCCC
ACATTGTAACAAAAACATGAATCCTAAAAAGTGCTCGCCAAATTATATAG
TTGACCTTGTTGTTGAAtacaaggaaaaacaaattcagCTGACTATATTT
CCTCAGCTTGTAAGAGAAATGAAATGGAACGAAGATAACCTTATTGAGGA
ATTGTTGAACCTGGATGATGTTGATATTACCTATaacaggaaaaaaatta
ttacaaaaatttCAGAACATCAAGACTTAGTCTGACAAAAAGGCCCTAAT
ATTTTAACTATTTTATCAATTAATTTCTCTGATCTTCTGCTTATTTACGT
TTGACTTTAGCTTTTGAACATTTATTATTTTAAACAACAATTAAGCACCA
AAGAGTATCGTTTACTAAATGCACGTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022076XLOC_022076Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037283-exon-sc0001607-1491911889:39182..39267TCONS_00037283-exon-sc0001607-1491911889:39182..39267Clytia hemisphaericaexon
TCONS_00037283-exon-sc0001607-1510915933:39182..39267TCONS_00037283-exon-sc0001607-1510915933:39182..39267Clytia hemisphaericaexon
TCONS_00037283-exon-sc0001607-1575043694:39182..39267TCONS_00037283-exon-sc0001607-1575043694:39182..39267Clytia hemisphaericaexon
TCONS_00037283-exon-sc0001607-1491911889:39772..40910TCONS_00037283-exon-sc0001607-1491911889:39772..40910Clytia hemisphaericaexon
TCONS_00037283-exon-sc0001607-1510915933:39772..40910TCONS_00037283-exon-sc0001607-1510915933:39772..40910Clytia hemisphaericaexon
TCONS_00037283-exon-sc0001607-1575043694:39772..40910TCONS_00037283-exon-sc0001607-1575043694:39772..40910Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001607supercontigsc0001607:39182..40910 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.170279	0	0.158148	0.116043	1.54715	0.187729	0.00588247	1.15651e-05	0.160684	0	0.253606	0	0	0	0	0.22089	0	0	0.170167	0.0186061	0.792072	1.36263e-07	0	0	0.187455	0.267679	0	0.426023	0	0.589209
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037283 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top