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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037282 ID=TCONS_00037282|Name=TCONS_00037282|organism=Clytia hemisphaerica|type=transcript|length=1403bp
CACAGATTGCATTGGTATTTTCAACTTCCACattatttaagattttttat
tttttaaacagataaaatgAACTGTGATCAAATCAACAACAATAATTTGA
AAGATGAAAACAACAAGGTGCTTGAAAATGTGGAAGAGGCAACACTAATG
CCAGAAACAACACCAATGTCAGGAACAACCGGCCAATCTCGACATTCCAC
CTTAGCTTCAGaatGTACCACACCCACAAAAAACTCAAACTACAAGAGTT
ACAAGATCAGGCAATGCTAGCTGGTTATATAGACGGTGTTGGTGAGGAGT
TCACTTCAAACAATAACCGTCAGTATTTTGATGTCGATATAAAGATAAGT
TCCGTTCAAAAAAGGAAGGTACGTGTGATGTCCGACAAAACGTATAGCCA
TGAATATTTCGAGTCACTTTGTGAACAAAAGGAAGCTGTTCTTTTAAGCA
ACGTGTCACCTATCAAGTCAGGAAGAAGTTTCTTCAACCCCTCAATAAAA
GGAACAGAGCTGTCTCCGCTCCCAAAacacaatttgaattttgattctGA
CGAACTTAATGTCATTACTGTCACTGATATTAATGCCATTCAACCAACTG
GCACGTTTAAGATACAAGGCCAAATTCAATGGGTGGAATCAAGTCGTCAA
GTTAATGTTAGTGGTAACAAAAGAACTATCAGAGaagcaaaatttcttga
taagacCGGTTGCATGGATTTGTCAGTTTGGGGCACAGAATTGATTTCCT
CGTTAAAGCATGAAACAACTTACATCTTCACAAACATTGCAACCAATTTT
TTCAAACACATGCGGCTGACTACCACATTTACTACTACATATAGTCAAAT
TGAGTCTGATGAAGAATACAGTTGGCAAGGTGTCACCATGAAGGATCACA
TCGTTCTTTCATGTCCTTAAATTGTCACTGCCACAGTAGAGAAATTTATC
ACATGTCGTTTTGCTAAATGTCAGAAGAAAATTGTGTACAATGAATCACT
TACAAAAAGTTTTGTACTATGCCCACATTGTAACAAAAACATGAATCCTA
AAAAGTGCTCGCCAAATTATATAGTTGACCTTGTTGTTGAAtacaaggaa
aaacaaattcagCTGACTATATTTCCTCAGCTTGTAAGAGAAATGAAATG
GAACGAAGATAACCTTATTGAGGAATTGTTGAACCTGGATGATGTTGATA
TTACCTATaacaggaaaaaaattattacaaaaatttCAGAACATCAAGAC
TTAGTCTGACAAAAAGGCCCTAATATTTTAACTATTTTATCAATTAATTT
CTCTGATCTTCTGCTTATTTACGTTTGACTTTAGCTTTTGAACATTTATT
ATTTTAAACAACAATTAAGCACCAAAGAGTATCGTTTACTAAATGCACGT
CTG Run BLAST on NCBI protein sequence of TCONS_00037282-protein >TCONS_00037282-protein ID=TCONS_00037282-protein|Name=TCONS_00037282-protein|organism=Clytia hemisphaerica|type=polypeptide|length=235bp
MYHTHKKLKLQELQDQAMLAGYIDGVGEEFTSNNNRQYFDVDIKISSVQK
RKVRVMSDKTYSHEYFESLCEQKEAVLLSNVSPIKSGRSFFNPSIKGTEL
SPLPKHNLNFDSDELNVITVTDINAIQPTGTFKIQGQIQWVESSRQVNVS
GNKRTIREAKFLDKTGCMDLSVWGTELISSLKHETTYIFTNIATNFFKHM
RLTTTFTTTYSQIESDEEYSWQGVTMKDHIVLSCP Run BLAST on NCBI transcript from alignment at sc0001607:38550..40910+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037282 ID=TCONS_00037282|Name=TCONS_00037282|organism=Clytia hemisphaerica|type=transcript|length=2361bp|location=Sequence derived from alignment at sc0001607:38550..40910+ (Clytia hemisphaerica)
CACAGATTGCATTGGTATTTTCAACTTCCACattatttaagattttttat
tttttaaacagataaaatgAACTGTGATCAAATCAACAACAATAATTTGA
AAGGTATgtgaatatattttattttttttgagtaACTGGGGGTGTCTTCA
AAAGAAGGATGTCTACACAGGTCTTGTAATTCATTCCATGATTTTAGACC
AGCTGGTTGCGTTATTGCATGCAAACAACATTCATCATTTTCGTTTCTAT
TTTTTAGATGAAAACAACAAGGTGCTTGAAAATGTGGAAGAGGCAACACT
AATGCCAGAAACAACACCAATGTCAGGAACAACCGGCCAATCTCGACATT
CCACCTTAGCTTCAGGTATTACTcccttttttatataaaaaaacaattga
tgttGATTTGGTGCTTTTTTCACAAATAACTGAGACACTCAATTCTTGAA
ATTAAACACCTGGCAAATTTTTTTGAGCTCCAAATCTTCTTACCCTAACT
TACAAAACTCGCAGGTGTTCTGGTTTTAACAACATTGTGTACCCAAAGTG
TATGCAGAGGTAATGTTTCAATCAGGAAAAGACAATACTTTTTTGTGTTT
GTTGCctaagctctaattagcaaagACCATGAAAATTTACATACAttgct
ttgtttttttctattttagaatGTACCACACCCACAAAAAACTCAAACTA
CAAGAGTTACAAGATCAGGCAAGTAAGTAATCAATTGGTATCATCCATAA
TGATATGGCAATTTGTTAGAGTAAAGCCAGGAAAGACAACATTacgattt
ctttttcttttatgttACTTTTAAGCTGTGGCTAAAATGTTAGAAAAAGT
CGCATATATAACAACACCAAGGCCAAATTTTAATCACACATGTGTGGAAT
TATAACATTATTGAATATAAGGTAGTTGCACCTAATGTGAACACGCTTCT
AATACTGTACTATTGTCTCGCCATTATGTACATCTCTTATCCAAGCAACT
ATCTATGTATTTAATaatctttttgtaaaatttcagaGCTTTTTAAAGGA
AGCAGTGTCTACAGAAAAAAAGTGTCCACATTAGAACCACCTACCTTATC
AATGATTAAAATTCCACATGTTCAAGCTGGTTCAAGCTCAAATTACTCTC
CTTTCTGCTATTTATCACGTCTCTTGAGATCTTCCCTCTTTAATTATACT
AAGCAAATCTTTCTCATTTCAGTGCTAGCTGGTTATATAGACGGTGTTGG
TGAGGAGTTCACTTCAAACAATAACCGTCAGTATTTTGATGTCGATATAA
AGATAAGTTCCGTTCAAAAAAGGAAGGTACGTGTGATGTCCGACAAAACG
TATAGCCATGAATATTTCGAGTCACTTTGTGAACAAAAGGAAGCTGTTCT
TTTAAGCAACGTGTCACCTATCAAGTCAGGAAGAAGTTTCTTCAACCCCT
CAATAAAAGGAACAGAGCTGTCTCCGCTCCCAAAacacaatttgaatttt
gattctGACGAACTTAATGTCATTACTGTCACTGATATTAATGCCATTCA
ACCAACTGGCACGTTTAAGATACAAGGCCAAATTCAATGGGTGGAATCAA
GTCGTCAAGTTAATGTTAGTGGTAACAAAAGAACTATCAGAGaagcaaaa
tttcttgataagacCGGTTGCATGGATTTGTCAGTTTGGGGCACAGAATT
GATTTCCTCGTTAAAGCATGAAACAACTTACATCTTCACAAACATTGCAA
CCAATTTTTTCAAACACATGCGGCTGACTACCACATTTACTACTACATAT
AGTCAAATTGAGTCTGATGAAGAATACAGTTGGCAAGGTGTCACCATGAA
GGATCACATCGTTCTTTCATGTCCTTAAATTGTCACTGCCACAGTAGAGA
AATTTATCACATGTCGTTTTGCTAAATGTCAGAAGAAAATTGTGTACAAT
GAATCACTTACAAAAAGTTTTGTACTATGCCCACATTGTAACAAAAACAT
GAATCCTAAAAAGTGCTCGCCAAATTATATAGTTGACCTTGTTGTTGAAt
acaaggaaaaacaaattcagCTGACTATATTTCCTCAGCTTGTAAGAGAA
ATGAAATGGAACGAAGATAACCTTATTGAGGAATTGTTGAACCTGGATGA
TGTTGATATTACCTATaacaggaaaaaaattattacaaaaatttCAGAAC
ATCAAGACTTAGTCTGACAAAAAGGCCCTAATATTTTAACTATTTTATCA
ATTAATTTCTCTGATCTTCTGCTTATTTACGTTTGACTTTAGCTTTTGAA
CATTTATTATTTTAAACAACAATTAAGCACCAAAGAGTATCGTTTACTAA
ATGCACGTCTG Coding sequence (CDS) from alignment at sc0001607:38550..40910+ >TCONS_00037282 ID=TCONS_00037282|Name=TCONS_00037282|organism=Clytia hemisphaerica|type=CDS|length=1416bp|location=Sequence derived from alignment at sc0001607:38550..40910+ (Clytia hemisphaerica)
atGTACCACACCCACAAAAAACTCAAACTACAAGAGTTACAAGATCAGGC
AATGCTAGCTGGTTATATAGACGGTGTTGGTGAGGAGTTCACTTCAAACA
ATAACCGTCAGTATTTTGATGTCGATATAAAGATAAGTTCCGTTCAAAAA
AGGAAGGTACGTGTGATGTCCGACAAAACGTATAGCCATGAATATTTCGA
GTCACTTTGTGAACAAAAGGAAGCTGTTCTTTTAAGCAACGTGTCACCTA
TCAAGTCAGGAAGAAGTTTCTTCAACCCCTCAATAAAAGGAACAGAGCTG
TCTCCGCTCCCAAAacacaatttgaattttgattctGACGAACTTAATGT
CATTACTGTCACTGATATTAATGCCATTCAACCAACTGGCACGTTTAAGA
TACAAGGCCAAATTCAATGGGTGGAATCAAGTCGTCAAGTTAATGTTAGT
GGTAACAAAAGAACTATCAGAGaagcaaaatttcttgataagacCGGTTG
CATGGATTTGTCAGTTTGGGGCACAGAATTGATTTCCTCGTTAAAGCATG
AAACAACTTACATCTTCACAAACATTGCAACCAATTTTTTCAAACACATG
CGGCTGACTACCACATTTACTACTACATATAGTCAAATTGAGTCTGATGA
AGAATACAGTTGGCAAGGTGTCACCATGAAGGATCACATCGTTCTTTCAT
GTCCTTAAatGTACCACACCCACAAAAAACTCAAACTACAAGAGTTACAA
GATCAGGCAATGCTAGCTGGTTATATAGACGGTGTTGGTGAGGAGTTCAC
TTCAAACAATAACCGTCAGTATTTTGATGTCGATATAAAGATAAGTTCCG
TTCAAAAAAGGAAGGTACGTGTGATGTCCGACAAAACGTATAGCCATGAA
TATTTCGAGTCACTTTGTGAACAAAAGGAAGCTGTTCTTTTAAGCAACGT
GTCACCTATCAAGTCAGGAAGAAGTTTCTTCAACCCCTCAATAAAAGGAA
CAGAGCTGTCTCCGCTCCCAAAacacaatttgaattttgattctGACGAA
CTTAATGTCATTACTGTCACTGATATTAATGCCATTCAACCAACTGGCAC
GTTTAAGATACAAGGCCAAATTCAATGGGTGGAATCAAGTCGTCAAGTTA
ATGTTAGTGGTAACAAAAGAACTATCAGAGaagcaaaatttcttgataag
acCGGTTGCATGGATTTGTCAGTTTGGGGCACAGAATTGATTTCCTCGTT
AAAGCATGAAACAACTTACATCTTCACAAACATTGCAACCAATTTTTTCA
AACACATGCGGCTGACTACCACATTTACTACTACATATAGTCAAATTGAG
TCTGATGAAGAATACAGTTGGCAAGGTGTCACCATGAAGGATCACATCGT
TCTTTCATGTCCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037282-exon-sc0001607-1491911889:38550..38652 | TCONS_00037282-exon-sc0001607-1491911889:38550..38652 | Clytia hemisphaerica | exon |
| TCONS_00037282-exon-sc0001607-1510915933:38550..38652 | TCONS_00037282-exon-sc0001607-1510915933:38550..38652 | Clytia hemisphaerica | exon |
| TCONS_00037282-exon-sc0001607-1575043694:38550..38652 | TCONS_00037282-exon-sc0001607-1575043694:38550..38652 | Clytia hemisphaerica | exon |
| TCONS_00037282-exon-sc0001607-1491911889:38807..38914 | TCONS_00037282-exon-sc0001607-1491911889:38807..38914 | Clytia hemisphaerica | exon |
| TCONS_00037282-exon-sc0001607-1510915933:38807..38914 | TCONS_00037282-exon-sc0001607-1510915933:38807..38914 | Clytia hemisphaerica | exon |
| TCONS_00037282-exon-sc0001607-1575043694:38807..38914 | TCONS_00037282-exon-sc0001607-1575043694:38807..38914 | Clytia hemisphaerica | exon |
| TCONS_00037282-exon-sc0001607-1491911889:39219..39271 | TCONS_00037282-exon-sc0001607-1491911889:39219..39271 | Clytia hemisphaerica | exon |
| TCONS_00037282-exon-sc0001607-1510915933:39219..39271 | TCONS_00037282-exon-sc0001607-1510915933:39219..39271 | Clytia hemisphaerica | exon |
| TCONS_00037282-exon-sc0001607-1575043694:39219..39271 | TCONS_00037282-exon-sc0001607-1575043694:39219..39271 | Clytia hemisphaerica | exon |
| TCONS_00037282-exon-sc0001607-1491911889:39772..40910 | TCONS_00037282-exon-sc0001607-1491911889:39772..40910 | Clytia hemisphaerica | exon |
| TCONS_00037282-exon-sc0001607-1510915933:39772..40910 | TCONS_00037282-exon-sc0001607-1510915933:39772..40910 | Clytia hemisphaerica | exon |
| TCONS_00037282-exon-sc0001607-1575043694:39772..40910 | TCONS_00037282-exon-sc0001607-1575043694:39772..40910 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001607 | supercontig | sc0001607:38550..40910 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012340 | NA-bd_OB-fold |
Blast
The following BLAST results are available for this feature:
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