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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037281 ID=TCONS_00037281|Name=TCONS_00037281|organism=Clytia hemisphaerica|type=transcript|length=2095bp
TGTTCAGAAAATTGCAAATGTTTTGCCAAGATATCCCAGAGATATACCTG
TTAtagtttttaaatttgatggGAAGGATAATAAATCTAAAGAGCTCAGA
GTACGTAGACAAAAGGTTGTTGATGCTTTAAAGTGGCTAACCGGTAAAAA
TGAGAAGGGTGAACCAAACAACATCAGATACCAAGATGTCACTATTGATG
AAAATAGATTTGATAGTTTACCTGAAGATGATTTTCTTAAAATGCCTATG
aatgcaaattttgaaaattatgaaaaagatatttttaatgatGATGACTG
TTGTAGTGATGACGAGGTTCTTCCTGATATGGGTCCTATTCCTgaggaaa
atgatgaaaaagttTATGACTGTAATACTGAAATGGGAAGTTTTAGTTTT
ATTCCAACTAAGATTAAGTCCAAAATGGAGAAACATATTTTAAATGATTC
AGTTCTTAAACCGGAAGCAATTGATGTTGGAAAAGAACCATTAAATGAGT
TCACCACTGAGTATTTAGCTACATTAACATTTCCAACACTATTTCCTGAT
GGGAAAGGAGACCCCACTAGATTTAGCACGAAACGGTCTATAGCAAAAAG
TGATACAGAATCTTTCTCAGCAAAAATTAAACATTTGATTAAATTTGGTG
AGTTTATTGATGGTACAGATTTGCGGCCCATTCTCGTTTTGGATTTTGGG
CCTATAATATGCTATATTGCAGACGACTTTTAGGACAAGGAAGCTTTTAC
TTGAAGCAAAATCCAGGAGAACCTAACTTGACTATTGATGAGTTACAAGA
AATGATTAGAGCTGGTACTTATAGTAGtgttatgaaaaaacttttgagat
aTGCTAAGAACATTACAGGAACAAATGCTTATTGGAGTCAAGCTAAAGAG
CAGTTAAAAGCTACAATAAACCAAGTTGGCTCACCAAcaattttttggac
tttgtcttGTGCAGAGTTTCACTGGCCAGAGTATCATGCCTTATTTTCTA
CTGATGAGAAGGCTGATTCAAGCACTTTACGTGAGAATATAATTAACAAT
CCACATTTGATCGATTGGTTCTTTACAGTCagagttgaaaattttgttaa
gCATTGGCTTTATGAGACTCTTGAGGCTGAATGGCATTGGTACAGATTTG
AATACGCTGTTATGCGTGGTTCAATTCATTGCCATGGTGTCGCCAAGCTT
AAAAATGATCCAGGACTATGTAAACTTACACAAAAAGCCTTAGAAGGTCA
TCTAGCTGAGAAAAAATTGTCTGAAACTGAtgatgatattgaaaataata
gAGTACAATTACAGGTTATTGTTAATGAAGGTAAAGCTGCAGCACAGCAA
GTTTGTGACTATGTTGATACTTTGGTAACTGCTTGTAATCCATGCACACC
TGAGGAACAGCTGGGTAAAACCAAAAGTTCATCCTTGAAATTTATCTCAA
TTCAAACACAATTCAACAAAGTAACTAAAGCCAAAAACAAAGGTTATTTT
CACAACATTCAAATCGATCTGAAACAGTAATGTATCCATGCAATATCAAA
CCATATTTCAAAAACGTTTGGTTGATTTTAAATCCTGTAATTAATGTTGT
CCATAATATGATCAAATTGTAAAGGATATGTACTTTTAGAAGTAAATTAA
CGTTCGTTATTGGCACCTTGCTTCTGATTAAACCTTTCATTGAATATAGT
ATTGCAGTCACGTATGAAATTTATTAACCCCCGTTGCAGCCCGTTGTCAT
GTTTTCCTATTAATGTTCTGGATCCTGTGTCACCTACGCATGTTATTGAA
ATAGAGTTTAACAACGATATGCATTTGCTGATGACCAAGATATATTTTCT
CAATCTTCCAGTTAAAAATTGTGGCTGAATAAAGTATATACATTCTGGCT
TAAACATGGATATTATTGTATTCCCTGGTTAACatcaaaaatacttacaa
attGCTGCTGTTCataaatttttgttatttgCTGTTATCATTATATGACG
TTGGTTTTTGATTGCAAATGGAAGTTGAATTGTGTTAATAGACAATTTTT
ACTAGTATTTTTGAATCAATTGCAATTTTCATTTGTTGAATTTGC Run BLAST on NCBI protein sequence of TCONS_00037281-protein >TCONS_00037281-protein ID=TCONS_00037281-protein|Name=TCONS_00037281-protein|organism=Clytia hemisphaerica|type=polypeptide|length=273bp
MLYCRRLLGQGSFYLKQNPGEPNLTIDELQEMIRAGTYSSVMKKLLRYAK
NITGTNAYWSQAKEQLKATINQVGSPTIFWTLSCAEFHWPEYHALFSTDE
KADSSTLRENIINNPHLIDWFFTVRVENFVKHWLYETLEAEWHWYRFEYA
VMRGSIHCHGVAKLKNDPGLCKLTQKALEGHLAEKKLSETDDDIENNRVQ
LQVIVNEGKAAAQQVCDYVDTLVTACNPCTPEEQLGKTKSSSLKFISIQT
QFNKVTKAKNKGYFHNIQIDLKQ Run BLAST on NCBI transcript from alignment at sc0001607:29989..35087+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037281 ID=TCONS_00037281|Name=TCONS_00037281|organism=Clytia hemisphaerica|type=transcript|length=5099bp|location=Sequence derived from alignment at sc0001607:29989..35087+ (Clytia hemisphaerica)
TGTTCAGAAAATTGCAAATGTTTTGCCAAGATATCCCAGAGATATACCTG
TTAtagtttttaaatttgatggGAAGGATAATAAATCTAAAGAGCTCAGA
GTACGTAGACAAAAGGTTGTTGATGCTTTAAAGTGGCTAACCGGTAAAAA
TGAGAAGGGTGAACCAAACAACATCAGATACCAAGATGTCACTATTGATG
AAAATAGATTTGATAGTTTACCTGAAGATGATTTTCTTAAAATGCCTATG
aatgcaaattttgaaaattatgaaaaagatatttttaatgatGATGACTG
TTGTAGTGATGACGAGGTTCTTCCTGATATGGGTCCTATTCCTgaggaaa
atgatgaaaaagttTATGACTGTAATACTGAAATGGGAAGTTTTAGTTTT
ATTCCAACTAAGATTAAGTCCAAAATGGAGAAACATATTTTAAATGATTC
AGTTCTTAAACCGGAAGCAATTGATGTTGGAAAAGAACCATTAAATGAGT
TCACCACTGAGTATTTAGCTACATTAACATTTCCAACACTATTTCCTGAT
GGGAAAGGAGACCCCACTAGATTTAGCACGAAACGGTCTATAGCAAAAAG
TGATACAGAATCTTTCTCAGCAAAAATTAAACATTTGATTAAATTTGGTG
AGTTTATTGATGGTACAGATTTGCGGCCCATTCTCGTTTTGGATTTTGGG
CCTATAATATGCTATATTGCAGACGACTTTTAGGACAAGGAAGCTTTTAC
TTGAAGCAAAATCCAGGAGAACCTAACTTGACTATTGATGAGTTACAAGA
AATGATTAGAGCTGGTACTTATAGTAGtgttatgaaaaaacttttgagat
aTGCTAAGAACATTACAGGAACAAATGCTTATTGGAGTCAAGCTAAAGAG
CAGTTAAAAGCTACAATAAACCAAGTTGGCTCACCAAcaattttttggac
tttgtcttGTGCAGAGTTTCACTGGCCAGAGTATCATGCCTTATTTTCTA
CTGATGAGAAGGCTGATTCAAGCACTTTACGTGAGAATATAATTAACAAT
CCACATTTGATCGATTGGTTCTTTACAGTCagagttgaaaattttgttaa
gCATTGGCTTTATGAGACTCTTGAGGCTGAATGGCATTGGTACAGATTTG
AATACGCTGTTATGCGTGGTTCAATTCATTGCCATGGTGTCGCCAAGCTT
AAAAATGATCCAGGACTATGTAAACTTACACAAAAAGCCTTAGAAGGTCA
TCTAGCTGAGAAAAAATTGTCTGAAACTGAtgatgatattgaaaataata
gAGTACAATTACAGGTTATTGTTAATGAAGGTAAAGCTGCAGCACAGCAA
GTTTGTGACTATGTTGATACTTTGGTAACTGCTTGTAATCCATGCACACC
TGAGGAACAGCTGGGTAAAACCAAAAGTTCATCCTTGTAAGAGAAAGCTT
GAAGACTaaaatgatgatgattttgataATGATTATGCTGATTTAGTTAA
TTGTGTTCAGAGACATACTAAATGTAGCTCAGCTTACTGTTTACGTAAGA
ATGACGGTGAACAATATTGCCGGTTTAAATTTCCGTTTGAAGACTGTGAT
AAAACTTATCTTGAATTTGAAGAAGTAACTTCTAAGAAATACGGTAAGCA
ATTTAGACCCAAGATTGTCTTGAAGAGAAATGATTCCAGAGTTAATAGAC
ATCAGCGGCTGCAATTGCAATCATGGAGAGGTAATTGTGATATACAGCCA
ATTATAGATTATAATGCATGtttagaatatctcgcaaagtATGCTTCAAA
AGCTGAAAAGATTTCTAATGTTGCTAGAGATGCATTTGTCTCGGTCCCGT
CTCGGTAGTTGAAAATCTAAAGGGAACGGAACAAATGAGATCAGTTAAGC
TAAAATTGATTATAAAAGCTGTCGGTGAAAGAGATTTTAGTGTACAAGAG
GTAGTGCACCATATATTGTCACTGAAACTGATAAGTTCATCATTTCAAGT
ATTCAATGTCTCTGTTGACGGTTCAAGAAAGATTGAAATTAGCAATGAAG
AAATTGTCACTGAAGCATCTACTGTAGACAATTATGCTAACAGAGAAAAT
CTTCAAGGTTGTGATAGAACTATTTTGGAAAGTAATTTTGTTCAATTTGT
ATCAGACTACACAGTGACAAAAGAagttataaaaagaagaaaaaagcctG
TAATTGTTAGAGCATTCCCAAGTCCTCCAGCAAATCCAAAAGGACCTAAT
TATGGTGCTTTTTGCAAATATCAATTGCTTAAATATAAGCCATGGAGGTC
CAGGACAAGTGACGCTTGGGATAATTTAGATGGCGAAGATTCTGAAATGT
TTTGCCTGAAATGGAATGAGTTTTTGCAAAGTGAACAAGGTCAAAAACTT
GTTCCGAACTGGAGAAGAGAATTTCATAATGCAGAACTGTATTTTGAAAG
ATCAGAACATGATGATTATGAGGAAAATGTCGAAGGTGAACGAGAAGAGT
GGATGCACTTGGCTGACTTATGTGCTAATGATAATGATTCAGTTAATGAT
GAGACTAGTGTCAATAACATACAATATTGGCAGAATTTTAGACAAAATTA
TACTGAAGAACAAATTGGCAATATGGTTTCTTGGCTTGATAAGAAAAAAG
CAGAAGTGTctgaaagttttgatttatgcTTTGAACTTAATGTTGAATCA
CTCAATGAGGCTCAAAGAAGGGCATTTGACATTGTACTTGATCATGAGAA
AAATCCACATGAACAATTATTGATGATGATAACTGGATTAGCCGGAAGTG
GAAAATCATTTCTAATTAATAATATTAGGGCATTATTGCAAGAGAAATGT
ATAGTTTCAGCCTATTTTGGAATAGCTGCATTCAATGTAAAAGGCAAAAC
TTTGCATTCATTGTTAAAGTTACCAATACGAGGTAGAAATCTTAAAGATT
TGAAGGGTCCTGCTCTTTTACAATTACAGGAGAAATTAAATGGTGTAAAA
TATATCATTATTGATGAATACTCTGTTGTCGGCCAGAACTTACTAGGTTG
GATTGATAAGCGGTGCCGTCAAGGCACTGGTGATTCAGATAAACCATTTG
GAGGAATCTCAATAATTTTAGTTGGAGATATTGCTCAGCTACCACCTGTT
GGAGATAAAgttctatatcataaaaaacCTAATGGTGAAATAGGCACTAT
GGGGTTTTGTATGTATAGAAAATTTACTAAAGTTGTTAAACTCACTGTTA
ATGAAAGATCAAAAGGTGATAATATTGAACAAGAAAAGTTTAGATCTGCT
TTATACAGATTAAGAAATGGAGATTCAACTGAGGAAGATTGGCAGATGTT
TTTATCTAGAACACCTGCCAACTTAACAGAAGAAGTTGACAAGAAAAGTT
TTGTGAAATTgtcattttcaaatgaaaaagtagcTTGTGATAATCACGAG
GCTTTGATGAGTTTAAATGTACCTGTAGCACAAATAAATGCAAGGCATAG
TAATAAAGCTTCAGCTAAGTTATCATCAGACGATATGGGTGGATTAGAAC
CAAAGATATTTTTGTGTAAAGGCTCTAGAGTGATGCTTACTAGAAACCTA
TGGACTGAGAAAGGGCTTTGCAATGGATCAATGGGTTATGTGAAAGATAT
AATTTATCAGGAAGGAGATTCAACTCCGAATTTACCAATAGCTGTTGTTG
TTCAGTTTGATGATTTCTATACAGGACCAAGTATTTGTGAAGACCAGCCT
CGCTGTGTTCCCATTATACCTTTAACTAATGCTTCAGATTTACATGGTTC
TTCTCATGAGAGACAGCAGTTACCTTTGAGATTGTCTTGGGCAATTACTA
TTCATAAATCGCAAGGACTCACCATTAATAAAGCATGGATTGATTTAGGA
AATACTGAGAAATTTATTGGGTTAGCATATGTAGCAGTATCAAGGGTAAG
AGAGCTAAAAGATATGATAATTGAGTCAATGACACTAGAACGTTTAAGAG
ATGTAAAGAATAGAAAAGACTTTGAATATAGAAAAGCTGAAGAAGAAAAG
ATAACCGACTTAGCAAGATGTTTAAATGAAGGTGTATGAAGTTCAATAAT
AACCATTGAATAAGCCTTGAAAGGTAACCCTGtcataaaattacaaaatg
taaaTATAGAATAATTTGTactattattttctttttctttttataattta
gGAAATTTATCTCAATTCAAACACAATTCAACAAAGTAACTAAAGCCAAA
AACAAAGGTAagtttaaaattcttttttaatgtttcaatAGTTCTCGAAC
CACTTTTATTTTATACTGAAATTGTATAGGATAATATAATGTCGTCTTTC
TACGAAAATTACAAATAATCAATTTCGAGGGATTATACTATAGTTCTATA
GTTTTAGAGTGTTTAAAGCTCAAAATAAAATCTCTCTTAGGCATATACTA
TTAATACGGTAACCCAAttttaaataagtttttttttctcattcagGTTA
TTTTCACAACATTCAAATCGATCTGAAACAGTAATGTATCCATGCAATAT
CAAACCATATTTCAAAAACGTTTGGTTGATTTTAAATCCTGTAATTAATG
TTGTCCATAATATGATCAAATTGTAAAGGATATGTACTTTTAGAAGTAAA
TTAACGTTCGTTATTGGCACCTTGCTTCTGATTAAACCTTTCATTGAATA
TAGTATTGCAGTCACGTATGAAATTTATTAACCCCCGTTGCAGCCCGTTG
TCATGTTTTCCTATTAATGTTCTGGATCCTGTGTCACCTACGCATGTTAT
TGAAATAGAGTTTAACAACGATATGCATTTGCTGATGACCAAGATATATT
TTCTCAATCTTCCAGTTAAAAATTGTGGCTGAATAAAGTATATACATTCT
GGCTTAAACATGGATATTATTGTATTCCCTGGTTAACatcaaaaatactt
acaaattGCTGCTGTTCataaatttttgttatttgCTGTTATCATTATAT
GACGTTGGTTTTTGATTGCAAATGGAAGTTGAATTGTGTTAATAGACAAT
TTTTACTAGTATTTTTGAATCAATTGCAATTTTCATTTGTTGAATTTGC Coding sequence (CDS) from alignment at sc0001607:29989..35087+ >TCONS_00037281 ID=TCONS_00037281|Name=TCONS_00037281|organism=Clytia hemisphaerica|type=CDS|length=2466bp|location=Sequence derived from alignment at sc0001607:29989..35087+ (Clytia hemisphaerica)
ATGCTATATTGCAGACGACTTTTAGGACAAGGAAGCTTTTACTTGAAGCA
AAATCCAGGAGAACCTAACTTGACTATTGATGAGTTACAAGAAATGATTA
GAGCTGGTACTTATAGTAGtgttatgaaaaaacttttgagataTGCTAAG
AACATTACAGGAACAAATGCTTATTGGAGTCAAGCTAAAGAGCAGTTAAA
AGCTACAATAAACCAAGTTGGCTCACCAAcaattttttggactttgtctt
GTGCAGAGTTTCACTGGCCAGAGTATCATGCCTTATTTTCTACTGATGAG
AAGGCTGATTCAAGCACTTTACGTGAGAATATAATTAACAATCCACATTT
GATCGATTGGTTCTTTACAGTCagagttgaaaattttgttaagCATTGGC
TTTATGAGACTCTTGAGGCTGAATGGCATTGGTACAGATTTGAATACGCT
GTTATGCGTGGTTCAATTCATTGCCATGGTGTCGCCAAGCTTAAAAATGA
TCCAGGACTATGTAAACTTACACAAAAAGCCTTAGAAGGTCATCTAGCTG
AGAAAAAATTGTCTGAAACTGAtgatgatattgaaaataatagAGTACAA
TTACAGGTTATTGTTAATGAAGGTAAAGCTGCAGCACAGCAAGTTTGTGA
CTATGTTGATACTTTGGTAACTGCTTGTAATCCATGCACACCTGAGGAAC
AGCTGGGTAAAACCAAAAGTTCATCCTTGAAATTTATCTCAATTCAAACA
CAATTCAACAAAGTAACTAAAGCCAAAAACAAAGGTTATTTTCACAACAT
TCAAATCGATCTGAAACAGTAAATGCTATATTGCAGACGACTTTTAGGAC
AAGGAAGCTTTTACTTGAAGCAAAATCCAGGAGAACCTAACTTGACTATT
GATGAGTTACAAGAAATGATTAGAGCTGGTACTTATAGTAGtgttatgaa
aaaacttttgagataTGCTAAGAACATTACAGGAACAAATGCTTATTGGA
GTCAAGCTAAAGAGCAGTTAAAAGCTACAATAAACCAAGTTGGCTCACCA
AcaattttttggactttgtcttGTGCAGAGTTTCACTGGCCAGAGTATCA
TGCCTTATTTTCTACTGATGAGAAGGCTGATTCAAGCACTTTACGTGAGA
ATATAATTAACAATCCACATTTGATCGATTGGTTCTTTACAGTCagagtt
gaaaattttgttaagCATTGGCTTTATGAGACTCTTGAGGCTGAATGGCA
TTGGTACAGATTTGAATACGCTGTTATGCGTGGTTCAATTCATTGCCATG
GTGTCGCCAAGCTTAAAAATGATCCAGGACTATGTAAACTTACACAAAAA
GCCTTAGAAGGTCATCTAGCTGAGAAAAAATTGTCTGAAACTGAtgatga
tattgaaaataatagAGTACAATTACAGGTTATTGTTAATGAAGGTAAAG
CTGCAGCACAGCAAGTTTGTGACTATGTTGATACTTTGGTAACTGCTTGT
AATCCATGCACACCTGAGGAACAGCTGGGTAAAACCAAAAGTTCATCCTT
GAAATTTATCTCAATTCAAACACAATTCAACAAAGTAACTAAAGCCAAAA
ACAAAGGTTATTTTCACAACATTCAAATCGATCTGAAACAGTAAATGCTA
TATTGCAGACGACTTTTAGGACAAGGAAGCTTTTACTTGAAGCAAAATCC
AGGAGAACCTAACTTGACTATTGATGAGTTACAAGAAATGATTAGAGCTG
GTACTTATAGTAGtgttatgaaaaaacttttgagataTGCTAAGAACATT
ACAGGAACAAATGCTTATTGGAGTCAAGCTAAAGAGCAGTTAAAAGCTAC
AATAAACCAAGTTGGCTCACCAAcaattttttggactttgtcttGTGCAG
AGTTTCACTGGCCAGAGTATCATGCCTTATTTTCTACTGATGAGAAGGCT
GATTCAAGCACTTTACGTGAGAATATAATTAACAATCCACATTTGATCGA
TTGGTTCTTTACAGTCagagttgaaaattttgttaagCATTGGCTTTATG
AGACTCTTGAGGCTGAATGGCATTGGTACAGATTTGAATACGCTGTTATG
CGTGGTTCAATTCATTGCCATGGTGTCGCCAAGCTTAAAAATGATCCAGG
ACTATGTAAACTTACACAAAAAGCCTTAGAAGGTCATCTAGCTGAGAAAA
AATTGTCTGAAACTGAtgatgatattgaaaataatagAGTACAATTACAG
GTTATTGTTAATGAAGGTAAAGCTGCAGCACAGCAAGTTTGTGACTATGT
TGATACTTTGGTAACTGCTTGTAATCCATGCACACCTGAGGAACAGCTGG
GTAAAACCAAAAGTTCATCCTTGAAATTTATCTCAATTCAAACACAATTC
AACAAAGTAACTAAAGCCAAAAACAAAGGTTATTTTCACAACATTCAAAT
CGATCTGAAACAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037281-exon-sc0001607-1491911889:29989..31424 | TCONS_00037281-exon-sc0001607-1491911889:29989..31424 | Clytia hemisphaerica | exon |
| TCONS_00037281-exon-sc0001607-1510915933:29989..31424 | TCONS_00037281-exon-sc0001607-1510915933:29989..31424 | Clytia hemisphaerica | exon |
| TCONS_00037281-exon-sc0001607-1575043694:29989..31424 | TCONS_00037281-exon-sc0001607-1575043694:29989..31424 | Clytia hemisphaerica | exon |
| TCONS_00037281-exon-sc0001607-1491911889:34190..34245 | TCONS_00037281-exon-sc0001607-1491911889:34190..34245 | Clytia hemisphaerica | exon |
| TCONS_00037281-exon-sc0001607-1510915933:34190..34245 | TCONS_00037281-exon-sc0001607-1510915933:34190..34245 | Clytia hemisphaerica | exon |
| TCONS_00037281-exon-sc0001607-1575043694:34190..34245 | TCONS_00037281-exon-sc0001607-1575043694:34190..34245 | Clytia hemisphaerica | exon |
| TCONS_00037281-exon-sc0001607-1491911889:34485..35087 | TCONS_00037281-exon-sc0001607-1491911889:34485..35087 | Clytia hemisphaerica | exon |
| TCONS_00037281-exon-sc0001607-1510915933:34485..35087 | TCONS_00037281-exon-sc0001607-1510915933:34485..35087 | Clytia hemisphaerica | exon |
| TCONS_00037281-exon-sc0001607-1575043694:34485..35087 | TCONS_00037281-exon-sc0001607-1575043694:34485..35087 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001607 | supercontig | sc0001607:29989..35087 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR025476 | Helitron_helicase-like |
Blast
The following BLAST results are available for this feature:
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