TCONS_00037278 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037278
Unique NameTCONS_00037278
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length791

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037278 ID=TCONS_00037278|Name=TCONS_00037278|organism=Clytia hemisphaerica|type=transcript|length=791bp
attttagtcacgtgactctggtaggaaatccttccaaagatgagcttcac
tttttgaacaaagctgcaaatctagcccttcgggctttacagatatctgt
gcgtgggaccagttggtttcagaaagtagaagGAAATTTATCTCAATTCA
AACACAATTCAACAAAGTAACTAAAGCCAAAAACAAAGGTTATTTTCACA
ACATTCAAATCGATCTGAAACAGTAATGTATCCATGCAATATCAAACCAT
ATTTCAAAAACGTTTGGTTGATTTTAAATCCTGTAATTAATGTTGTCCAT
AATATGATCAAATTGTAAAGGATATGTACTTTTAGAAGTAAATTAACGTT
CGTTATTGGCACCTTGCTTCTGATTAAACCTTTCATTGAATATAGTATTG
CAGTCACGTATGAAATTTATTAACCCCCGTTGCAGCCCGTTGTCATGTTT
TCCTATTAATGTTCTGGATCCTGTGTCACCTACGCATGTTATTGAAATAG
AGTTTAACAACGATATGCATTTGCTGATGACCAAGATATATTTTCTCAAT
CTTCCAGTTAAAAATTGTGGCTGAATAAAGTATATACATTCTGGCTTAAA
CATGGATATTATTGTATTCCCTGGTTAACatcaaaaatacttacaaattG
CTGCTGTTCataaatttttgttatttgCTGTTATCATTATATGACGTTGG
TTTTTGATTGCAAATGGAAGTTGAATTGTGTTAATAGACAATTTTTACTA
GTATTTTTGAATCAATTGCAATTTTCATTTGTTGAATTTGC
Run BLAST on NCBI

transcript from alignment at sc0001607:27902..35087+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037278 ID=TCONS_00037278|Name=TCONS_00037278|organism=Clytia hemisphaerica|type=transcript|length=7186bp|location=Sequence derived from alignment at sc0001607:27902..35087+ (Clytia hemisphaerica)
attttagtcacgtgactctggtaggaaatccttccaaagatgagcttcac
tttttgaacaaagctgcaaatctagcccttcgggctttacagatatctgt
gcgtgggaccagttggtttcagaaagtagaaggtataaaataaattttat
atttcataGAATCCCTCTAATATGACTGACAAAGTATCCTCTAGTGATAT
TAATCAGACTTCAAATGAAGTTAATATTCAGACTACTATGAAAGTTGATA
AAGGAAAGACTTCTCTAAAAAGAGATTTAAAAGGAAAGACTTCTCTAAAA
AGAGATTTAAAAGGAAAGACTTCTCTAATAAGAGATTTAAATGAGAAAAG
TGAAATAACAGATATCCACTTTTTGAATGCTTGCAGATTGCAAAGCTCAG
TTTATACTTGTGCTGTTGACTCAtttcttgaaataatctttATTATTCTG
AGAGAATTCTTTCAGAACTTAGAgctcaaaagtgaattttttagaCTAAT
TGATACGTGTTTAGAACAATATGATGCATTATTGAATTTGAACTATTATA
ATGATGGAAATGTTAATAATGAAATGCTCCTGTCTCAATTTCGTCAGCCT
GTTTGGGATTTCTTAGCTGAAAAATGTCCATCATTTGCTAATCGTGATTG
TAATGCGcagttttcagaaattttttcagaCAACTACATGTTGTGTAACA
TGAccgatgaagaaaaaaatatattccgcGTAGGTTATACATTGAAAGGT
CAATGTACAGATTGCAATAGAGTCTTATCTGCTCAGGATTATGATATGCT
AAATTACATAACAGGGTATCATTTAAGCTTGTTAGACAACATTAATGATT
GGAAAGAACTTTTGAATCCACTACGTGAGAAAAGGTTGCGCTGCACATGT
GGCACAATTTGTGAAGACTTATTTTTAGATTCCTTTACACATCCAAAGgt
ttttttagttgaatttcACTCAGATATAAatcaagttatattttttgatg
agcAAATTTTGAttcaaggaaaaaaataagttcTAAAAGGATTAGTAAGA
AATCAGGGGAAACACTTTGTATGTGCTGTTTCTAAAAATGGGCATTGGAG
TTATATAGATGACTGTAAAGAATACATTTTGATTTATAACGATTTAGCAA
GTCTTTATAATAGCCAAAAAAATGGCTGGGTTTTCTGCTTTTATGTTAAA
GATGATGATTGTAACAGGATATCAGATGCCTCTGAATCAAATatacattt
ttcagtttctagACCAGTTGGTAAAAGAAAAAGTTGTGATTCAAAAGATT
ATCCGTTAAGAAGCAAATTTAGTAaaggaaataaagaaaaatctgaaatt
gATAGGGATTATCGTGagaagaataaagaaaaattgaaacaagctAAGAA
AGAATATCAtgaaatgaataaagaaaaagaaaaagaatatcgtgagatga
ataaagaaaaagaaaaagaatatcGTGAGATGAATAAAGAGAAAGCAAAA
GAATATCGTGAAATGAATAAAGCGAAAAGTAGCAATTACGCGAAAGAATA
TTATGAAAGAAATAGAGAATATATAAGAGCAAAGCGACGTGAGAGGTATA
ATACAAAGAAGAAAACTGATGCTCATAGcaataaaaaattgaacaagAAA
TCCAAtgagatttttgaagaaaagaacaAAACTGATGATTGTAGCaatga
aaatttaaacaaaaaatccaataagacttttgaagaaaagaaaaaaagtg
atgcTTGTAATGAAAGATTGAACAACAAATTCaataaaagtttagaaatg
ACTATAACTCAGTGCAAAACGTGCAAAGAAGCTTGGCCATTAACAGCGTC
GACAAAGTTTACGCCAGATAATTATGAATGTACAAGGTGTAAGAAAGAAA
AATGCTTACCGAAAAAGTTTAGCGAAGAAAATGATATGATACCTAGCACG
GTCCCAGTAGAGCTTCAAGGTCTTACGCAAGTTGAGGAAATGCTGATTGC
CCGTGCTTTTCCTGTTATTCAAGTTTATACGAAGCCAAATGGTGGACAAA
AAGCCTATAAAGGACATGTGTTAACTTTGCCACACGATGTTCAGAAAATT
GCAAATGTTTTGCCAAGATATCCCAGAGATATACCTGTTAtagtttttaa
atttgatggGAAGGATAATAAATCTAAAGAGCTCAGAGTACGTAGACAAA
AGGTTGTTGATGCTTTAAAGTGGCTAACCGGTAAAAATGAGAAGGGTGAA
CCAAACAACATCAGATACCAAGATGTCACTATTGATGAAAATAGATTTGA
TAGTTTACCTGAAGATGATTTTCTTAAAATGCCTATGaatgcaaattttg
aaaattatgaaaaagatatttttaatgatGATGACTGTTGTAGTGATGAC
GAGGTTCTTCCTGATATGGGTCCTATTCCTgaggaaaatgatgaaaaagt
tTATGACTGTAATACTGAAATGGGAAGTTTTAGTTTTATTCCAACTAAGA
TTAAGTCCAAAATGGAGAAACATATTTTAAATGATTCAGTTCTTAAACCG
GAAGCAATTGATGTTGGAAAAGAACCATTAAATGAGTTCACCACTGAGTA
TTTAGCTACATTAACATTTCCAACACTATTTCCTGATGGGAAAGGAGACC
CCACTAGATTTAGCACGAAACGGTCTATAGCAAAAAGTGATACAGAATCT
TTCTCAGCAAAAATTAAACATTTGATTAAATTTGGTGAGTTTATTGATGG
TACAGATTTGCGGCCCATTCTCGTTTTGGATTTTGGGCCTATAATATGCT
ATATTGCAGACGACTTTTAGGACAAGGAAGCTTTTACTTGAAGCAAAATC
CAGGAGAACCTAACTTGACTATTGATGAGTTACAAGAAATGATTAGAGCT
GGTACTTATAGTAGtgttatgaaaaaacttttgagataTGCTAAGAACAT
TACAGGAACAAATGCTTATTGGAGTCAAGCTAAAGAGCAGTTAAAAGCTA
CAATAAACCAAGTTGGCTCACCAAcaattttttggactttgtcttGTGCA
GAGTTTCACTGGCCAGAGTATCATGCCTTATTTTCTACTGATGAGAAGGC
TGATTCAAGCACTTTACGTGAGAATATAATTAACAATCCACATTTGATCG
ATTGGTTCTTTACAGTCagagttgaaaattttgttaagCATTGGCTTTAT
GAGACTCTTGAGGCTGAATGGCATTGGTACAGATTTGAATACGCTGTTAT
GCGTGGTTCAATTCATTGCCATGGTGTCGCCAAGCTTAAAAATGATCCAG
GACTATGTAAACTTACACAAAAAGCCTTAGAAGGTCATCTAGCTGAGAAA
AAATTGTCTGAAACTGAtgatgatattgaaaataatagAGTACAATTACA
GGTTATTGTTAATGAAGGTAAAGCTGCAGCACAGCAAGTTTGTGACTATG
TTGATACTTTGGTAACTGCTTGTAATCCATGCACACCTGAGGAACAGCTG
GGTAAAACCAAAAGTTCATCCTTGTAAGAGAAAGCTTGAAGACTaaaatg
atgatgattttgataATGATTATGCTGATTTAGTTAATTGTGTTCAGAGA
CATACTAAATGTAGCTCAGCTTACTGTTTACGTAAGAATGACGGTGAACA
ATATTGCCGGTTTAAATTTCCGTTTGAAGACTGTGATAAAACTTATCTTG
AATTTGAAGAAGTAACTTCTAAGAAATACGGTAAGCAATTTAGACCCAAG
ATTGTCTTGAAGAGAAATGATTCCAGAGTTAATAGACATCAGCGGCTGCA
ATTGCAATCATGGAGAGGTAATTGTGATATACAGCCAATTATAGATTATA
ATGCATGtttagaatatctcgcaaagtATGCTTCAAAAGCTGAAAAGATT
TCTAATGTTGCTAGAGATGCATTTGTCTCGGTCCCGTCTCGGTAGTTGAA
AATCTAAAGGGAACGGAACAAATGAGATCAGTTAAGCTAAAATTGATTAT
AAAAGCTGTCGGTGAAAGAGATTTTAGTGTACAAGAGGTAGTGCACCATA
TATTGTCACTGAAACTGATAAGTTCATCATTTCAAGTATTCAATGTCTCT
GTTGACGGTTCAAGAAAGATTGAAATTAGCAATGAAGAAATTGTCACTGA
AGCATCTACTGTAGACAATTATGCTAACAGAGAAAATCTTCAAGGTTGTG
ATAGAACTATTTTGGAAAGTAATTTTGTTCAATTTGTATCAGACTACACA
GTGACAAAAGAagttataaaaagaagaaaaaagcctGTAATTGTTAGAGC
ATTCCCAAGTCCTCCAGCAAATCCAAAAGGACCTAATTATGGTGCTTTTT
GCAAATATCAATTGCTTAAATATAAGCCATGGAGGTCCAGGACAAGTGAC
GCTTGGGATAATTTAGATGGCGAAGATTCTGAAATGTTTTGCCTGAAATG
GAATGAGTTTTTGCAAAGTGAACAAGGTCAAAAACTTGTTCCGAACTGGA
GAAGAGAATTTCATAATGCAGAACTGTATTTTGAAAGATCAGAACATGAT
GATTATGAGGAAAATGTCGAAGGTGAACGAGAAGAGTGGATGCACTTGGC
TGACTTATGTGCTAATGATAATGATTCAGTTAATGATGAGACTAGTGTCA
ATAACATACAATATTGGCAGAATTTTAGACAAAATTATACTGAAGAACAA
ATTGGCAATATGGTTTCTTGGCTTGATAAGAAAAAAGCAGAAGTGTctga
aagttttgatttatgcTTTGAACTTAATGTTGAATCACTCAATGAGGCTC
AAAGAAGGGCATTTGACATTGTACTTGATCATGAGAAAAATCCACATGAA
CAATTATTGATGATGATAACTGGATTAGCCGGAAGTGGAAAATCATTTCT
AATTAATAATATTAGGGCATTATTGCAAGAGAAATGTATAGTTTCAGCCT
ATTTTGGAATAGCTGCATTCAATGTAAAAGGCAAAACTTTGCATTCATTG
TTAAAGTTACCAATACGAGGTAGAAATCTTAAAGATTTGAAGGGTCCTGC
TCTTTTACAATTACAGGAGAAATTAAATGGTGTAAAATATATCATTATTG
ATGAATACTCTGTTGTCGGCCAGAACTTACTAGGTTGGATTGATAAGCGG
TGCCGTCAAGGCACTGGTGATTCAGATAAACCATTTGGAGGAATCTCAAT
AATTTTAGTTGGAGATATTGCTCAGCTACCACCTGTTGGAGATAAAgttc
tatatcataaaaaacCTAATGGTGAAATAGGCACTATGGGGTTTTGTATG
TATAGAAAATTTACTAAAGTTGTTAAACTCACTGTTAATGAAAGATCAAA
AGGTGATAATATTGAACAAGAAAAGTTTAGATCTGCTTTATACAGATTAA
GAAATGGAGATTCAACTGAGGAAGATTGGCAGATGTTTTTATCTAGAACA
CCTGCCAACTTAACAGAAGAAGTTGACAAGAAAAGTTTTGTGAAATTgtc
attttcaaatgaaaaagtagcTTGTGATAATCACGAGGCTTTGATGAGTT
TAAATGTACCTGTAGCACAAATAAATGCAAGGCATAGTAATAAAGCTTCA
GCTAAGTTATCATCAGACGATATGGGTGGATTAGAACCAAAGATATTTTT
GTGTAAAGGCTCTAGAGTGATGCTTACTAGAAACCTATGGACTGAGAAAG
GGCTTTGCAATGGATCAATGGGTTATGTGAAAGATATAATTTATCAGGAA
GGAGATTCAACTCCGAATTTACCAATAGCTGTTGTTGTTCAGTTTGATGA
TTTCTATACAGGACCAAGTATTTGTGAAGACCAGCCTCGCTGTGTTCCCA
TTATACCTTTAACTAATGCTTCAGATTTACATGGTTCTTCTCATGAGAGA
CAGCAGTTACCTTTGAGATTGTCTTGGGCAATTACTATTCATAAATCGCA
AGGACTCACCATTAATAAAGCATGGATTGATTTAGGAAATACTGAGAAAT
TTATTGGGTTAGCATATGTAGCAGTATCAAGGGTAAGAGAGCTAAAAGAT
ATGATAATTGAGTCAATGACACTAGAACGTTTAAGAGATGTAAAGAATAG
AAAAGACTTTGAATATAGAAAAGCTGAAGAAGAAAAGATAACCGACTTAG
CAAGATGTTTAAATGAAGGTGTATGAAGTTCAATAATAACCATTGAATAA
GCCTTGAAAGGTAACCCTGtcataaaattacaaaatgtaaaTATAGAATA
ATTTGTactattattttctttttctttttataatttagGAAATTTATCTC
AATTCAAACACAATTCAACAAAGTAACTAAAGCCAAAAACAAAGGTAagt
ttaaaattcttttttaatgtttcaatAGTTCTCGAACCACTTTTATTTTA
TACTGAAATTGTATAGGATAATATAATGTCGTCTTTCTACGAAAATTACA
AATAATCAATTTCGAGGGATTATACTATAGTTCTATAGTTTTAGAGTGTT
TAAAGCTCAAAATAAAATCTCTCTTAGGCATATACTATTAATACGGTAAC
CCAAttttaaataagtttttttttctcattcagGTTATTTTCACAACATT
CAAATCGATCTGAAACAGTAATGTATCCATGCAATATCAAACCATATTTC
AAAAACGTTTGGTTGATTTTAAATCCTGTAATTAATGTTGTCCATAATAT
GATCAAATTGTAAAGGATATGTACTTTTAGAAGTAAATTAACGTTCGTTA
TTGGCACCTTGCTTCTGATTAAACCTTTCATTGAATATAGTATTGCAGTC
ACGTATGAAATTTATTAACCCCCGTTGCAGCCCGTTGTCATGTTTTCCTA
TTAATGTTCTGGATCCTGTGTCACCTACGCATGTTATTGAAATAGAGTTT
AACAACGATATGCATTTGCTGATGACCAAGATATATTTTCTCAATCTTCC
AGTTAAAAATTGTGGCTGAATAAAGTATATACATTCTGGCTTAAACATGG
ATATTATTGTATTCCCTGGTTAACatcaaaaatacttacaaattGCTGCT
GTTCataaatttttgttatttgCTGTTATCATTATATGACGTTGGTTTTT
GATTGCAAATGGAAGTTGAATTGTGTTAATAGACAATTTTTACTAGTATT
TTTGAATCAATTGCAATTTTCATTTGTTGAATTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022075XLOC_022075Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037278-exon-sc0001607-1491911889:27902..28033TCONS_00037278-exon-sc0001607-1491911889:27902..28033Clytia hemisphaericaexon
TCONS_00037278-exon-sc0001607-1510915933:27902..28033TCONS_00037278-exon-sc0001607-1510915933:27902..28033Clytia hemisphaericaexon
TCONS_00037278-exon-sc0001607-1575043694:27902..28033TCONS_00037278-exon-sc0001607-1575043694:27902..28033Clytia hemisphaericaexon
TCONS_00037278-exon-sc0001607-1491911889:34190..34245TCONS_00037278-exon-sc0001607-1491911889:34190..34245Clytia hemisphaericaexon
TCONS_00037278-exon-sc0001607-1510915933:34190..34245TCONS_00037278-exon-sc0001607-1510915933:34190..34245Clytia hemisphaericaexon
TCONS_00037278-exon-sc0001607-1575043694:34190..34245TCONS_00037278-exon-sc0001607-1575043694:34190..34245Clytia hemisphaericaexon
TCONS_00037278-exon-sc0001607-1491911889:34485..35087TCONS_00037278-exon-sc0001607-1491911889:34485..35087Clytia hemisphaericaexon
TCONS_00037278-exon-sc0001607-1510915933:34485..35087TCONS_00037278-exon-sc0001607-1510915933:34485..35087Clytia hemisphaericaexon
TCONS_00037278-exon-sc0001607-1575043694:34485..35087TCONS_00037278-exon-sc0001607-1575043694:34485..35087Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001607supercontigsc0001607:27902..35087 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.6365	1.11226	0.360591	0.422182	7.60045	3.50081	9.76553	11.4182	7.35992	5.9596	4.82152	6.76875	7.82207	6.70556	4.27611	4.87279	5.02529	5.1271	5.49256	6.06856	16.2974	15.3505	6.87797	7.3065	1.74951	4.04667	6.29536	6.1938	5.25672	3.54974
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037278 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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