TCONS_00037277 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037277
Unique NameTCONS_00037277
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length530

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037277 ID=TCONS_00037277|Name=TCONS_00037277|organism=Clytia hemisphaerica|type=transcript|length=530bp
aatttaaatttttctatattaaaatttgcaaaaaaataaatcggaaggtt
tttagttttttccaaCAGATGATGCTTTATCTtgtttttaggtaaaaatt
cCTAAGGATTTTTGAGATTTATGTTGATATAGTTTTCACTTAAggaattt
gttgttgttttattttatcaatttcTTGTTTTCTCTGTTTTGTTTGTGGT
TTTGTGGTTTTCCGAAGAGCTTTTGGAGGTCGTCAGTTGACTCAGATCTA
CTCAGGTGAAGTTTTCGGCCCTTTAATTCAATAACTCCTCGTAGATCAGC
GGGCCATGTAGTatcaatttgttgttttataGAAATACTACATCCTCAAA
GCTCAataatgtttttagaaaataattttgatagcGCTATAATGTATCTG
ATTAGGAAACCATAATTAATTTGATGGTTAGATAATTAATATAAAGTGAT
CAATAAGACTTCATACCTGACATTTTAAGTTTGGATATTTTTGATTATGT
CCGTCTTCTTCTGTTACATGTGCAAAAAGG
Run BLAST on NCBI

transcript from alignment at sc0001606:22733..23262

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037277 ID=TCONS_00037277|Name=TCONS_00037277|organism=Clytia hemisphaerica|type=transcript|length=530bp|location=Sequence derived from alignment at sc0001606:22733..23262 (Clytia hemisphaerica)
CCTTTTTGCACATGTAACAGAAGAAGACGGACATAATCAAAAATATCCAA
ACTTAAAATGTCAGGTATGAAGTCTTATTGATCACTTTATATTAATTATC
TAACCATCAAATTAATTATGGTTTCCTAATCAGATACATTATAGCgctat
caaaattattttctaaaaacattatTGAGCTTTGAGGATGTAGTATTTCt
ataaaacaacaaattgatACTACATGGCCCGCTGATCTACGAGGAGTTAT
TGAATTAAAGGGCCGAAAACTTCACCTGAGTAGATCTGAGTCAACTGACG
ACCTCCAAAAGCTCTTCGGAAAACCACAAAACCACAAACAAAACAGAGAA
AACAAgaaattgataaaataaaacaacaacaaattccTTAAGTGAAAACT
ATATCAACATAAATCTCAAAAATCCTTAGgaatttttacctaaaaacaAG
ATAAAGCATCATCTGttggaaaaaactaaaaaccttccgatttatttttt
tgcaaattttaatatagaaaaatttaaatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022074XLOC_022074Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037277-exon-sc0001606-1491911889:22733..23262TCONS_00037277-exon-sc0001606-1491911889:22733..23262Clytia hemisphaericaexon
TCONS_00037277-exon-sc0001606-1510915933:22733..23262TCONS_00037277-exon-sc0001606-1510915933:22733..23262Clytia hemisphaericaexon
TCONS_00037277-exon-sc0001606-1575043694:22733..23262TCONS_00037277-exon-sc0001606-1575043694:22733..23262Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001606supercontigsc0001606:22733..23262 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.663135	0.534713	0.625697	1.22429	0.596183	0.353334	0.568377	0.798161	0.558811	0.807541	0	0.441644	0.514536	0.229007	1.94551	1.14494	0.995626	0.850404	2.70222	1.59825	1.06859	0.781835	1.39395	1.61293	0.35599	0.211808	1.57178	2.26431	2.5761	1.49979
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037277 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top