TCONS_00037235 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037235
Unique NameTCONS_00037235
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length438

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037235 ID=TCONS_00037235|Name=TCONS_00037235|organism=Clytia hemisphaerica|type=transcript|length=438bp
GTTGATTCTGTTGGCCATTGGCGAAGTTGATAAGCTCTTTCTGTTGGTAG
ATTTTGATTTCTCGTTCCAGGAAGGTGAGAAGTTTAGTCCACAACTCTTT
ACCATCAGGTGTCTCGTCTTCTTCTGCACACGAGGTCAGCCACTTCATGG
TGATTTGATTGCCCATCACATTGTAAATTTGATTGATACCATCACCATAG
TAGAGATGTGGTTCGATTTGATGCTCACTTGCCAGACTCATCAATTCTTT
CATTAGATTGATAATCTTTCCAAGAGCTTCGACAAATTTGGTTGGCTCTC
TAATTTTCGACAATTTATCTAATTGGGTAAGCTCAAAATGTTTGTTAGAT
AATAAACGTTTGACGTCACCAAAGCTTTTCTTAAGAATGCTCCAGATTTC
GTTGATGTCTGACTCATGTTTCACAATAGATAATGCTG
Run BLAST on NCBI

protein sequence of TCONS_00037235-protein

>TCONS_00037235-protein ID=TCONS_00037235-protein|Name=TCONS_00037235-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
ALSIVKHESDINEIWSILKKSFGDVKRLLSNKHFELTQLDKLSKIREPTK
FVEALGKIINLMKELMSLASEHQIEPHLYYGDGINQIYNVMGNQITMKWL
TSCAEEDETPDGKELWTKLLTFLEREIKIYQQKELINFANGQQNQ
Run BLAST on NCBI

transcript from alignment at sc0001594:12411..12848

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037235 ID=TCONS_00037235|Name=TCONS_00037235|organism=Clytia hemisphaerica|type=transcript|length=438bp|location=Sequence derived from alignment at sc0001594:12411..12848 (Clytia hemisphaerica)
CAGCATTATCTATTGTGAAACATGAGTCAGACATCAACGAAATCTGGAGC
ATTCTTAAGAAAAGCTTTGGTGACGTCAAACGTTTATTATCTAACAAACA
TTTTGAGCTTACCCAATTAGATAAATTGTCGAAAATTAGAGAGCCAACCA
AATTTGTCGAAGCTCTTGGAAAGATTATCAATCTAATGAAAGAATTGATG
AGTCTGGCAAGTGAGCATCAAATCGAACCACATCTCTACTATGGTGATGG
TATCAATCAAATTTACAATGTGATGGGCAATCAAATCACCATGAAGTGGC
TGACCTCGTGTGCAGAAGAAGACGAGACACCTGATGGTAAAGAGTTGTGG
ACTAAACTTCTCACCTTCCTGGAACGAGAAATCAAAATCTACCAACAGAA
AGAGCTTATCAACTTCGCCAATGGCCAACAGAATCAAC

Coding sequence (CDS) from alignment at sc0001594:12411..12848

>TCONS_00037235 ID=TCONS_00037235|Name=TCONS_00037235|organism=Clytia hemisphaerica|type=CDS|length=435bp|location=Sequence derived from alignment at sc0001594:12411..12848 (Clytia hemisphaerica)
GCATTATCTATTGTGAAACATGAGTCAGACATCAACGAAATCTGGAGCAT
TCTTAAGAAAAGCTTTGGTGACGTCAAACGTTTATTATCTAACAAACATT
TTGAGCTTACCCAATTAGATAAATTGTCGAAAATTAGAGAGCCAACCAAA
TTTGTCGAAGCTCTTGGAAAGATTATCAATCTAATGAAAGAATTGATGAG
TCTGGCAAGTGAGCATCAAATCGAACCACATCTCTACTATGGTGATGGTA
TCAATCAAATTTACAATGTGATGGGCAATCAAATCACCATGAAGTGGCTG
ACCTCGTGTGCAGAAGAAGACGAGACACCTGATGGTAAAGAGTTGTGGAC
TAAACTTCTCACCTTCCTGGAACGAGAAATCAAAATCTACCAACAGAAAG
AGCTTATCAACTTCGCCAATGGCCAACAGAATCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022035XLOC_022035Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037235-proteinTCONS_00037235-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037235-exon-sc0001594-1491911889:12411..12848TCONS_00037235-exon-sc0001594-1491911889:12411..12848Clytia hemisphaericaexon
TCONS_00037235-exon-sc0001594-1510915933:12411..12848TCONS_00037235-exon-sc0001594-1510915933:12411..12848Clytia hemisphaericaexon
TCONS_00037235-exon-sc0001594-1575043694:12411..12848TCONS_00037235-exon-sc0001594-1575043694:12411..12848Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001594supercontigsc0001594:12411..12848 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.21403	0.333358	0.966099	0.171615	0	0.714873	0	0.543512	0.28764	0.455867	0	0.103179	0.206071	0	0	0.146086	0.232603	0.119205	0	0.172334	0.14979	0	0.355267	0	0	0	0.212432	0	0	0.44461
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037235 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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