TCONS_00037232 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037232
Unique NameTCONS_00037232
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length282

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037232 ID=TCONS_00037232|Name=TCONS_00037232|organism=Clytia hemisphaerica|type=transcript|length=282bp
GTTCGACACCCATTTGCTCGACTGCATGGTTGTTCGACgaccacttgttc
gacactctTCTCTCAAACAACTGGTCTGTTGAACAACTATAtagattgtc
gaacaagtggattGTCAATCAACTGGGTTGTCGATCATTTTGGCACACAT
TTGTTCcacaacccacttgttcgacattcAATTTGACAAGAATTTGTTGA
ACAAGTAAGCTGTGGAAAAAATGGGTTGTTGAACATGTGACATATACTTA
ACAcccatttttctgtaaattgtAAGTATGTG
Run BLAST on NCBI

transcript from alignment at sc0001592:66478..66759

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037232 ID=TCONS_00037232|Name=TCONS_00037232|organism=Clytia hemisphaerica|type=transcript|length=282bp|location=Sequence derived from alignment at sc0001592:66478..66759 (Clytia hemisphaerica)
CACATACTTacaatttacagaaaaatgggTGTTAAGTATATGTCACATGT
TCAACAACCCATTTTTTCCACAGCTTACTTGTTCAACAAATTCTTGTCAA
ATTgaatgtcgaacaagtgggttgtgGAACAAATGTGTGCCAAAATGATC
GACAACCCAGTTGATTGACaatccacttgttcgacaatctaTATAGTTGT
TCAACAGACCAGTTGTTTGAGAGAagagtgtcgaacaagtggtcGTCGAA
CAACCATGCAGTCGAGCAAATGGGTGTCGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022032XLOC_022032Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037232-exon-sc0001592-1491911889:66478..66759TCONS_00037232-exon-sc0001592-1491911889:66478..66759Clytia hemisphaericaexon
TCONS_00037232-exon-sc0001592-1510915933:66478..66759TCONS_00037232-exon-sc0001592-1510915933:66478..66759Clytia hemisphaericaexon
TCONS_00037232-exon-sc0001592-1575043694:66478..66759TCONS_00037232-exon-sc0001592-1575043694:66478..66759Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001592supercontigsc0001592:66478..66759 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.89155	1.26917	3.45247	2.27808	10.8516	13.0455	10.9772	15.0962	5.44667	5.15656	12.9926	6.52386	9.81546	13.9264	4.97918	10.3629	6.53632	11.1893	5.1128	4.90908	5.41762	5.54772	6.14064	6.17324	9.96341	8.70368	10.4627	7.85786	1.87634	4.78779
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037232 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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