TCONS_00037231 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037231
Unique NameTCONS_00037231
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length745

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037231 ID=TCONS_00037231|Name=TCONS_00037231|organism=Clytia hemisphaerica|type=transcript|length=745bp
TGGTTCTGGGTCTGGTGCAGAAGAATGCTCTTGAAGGATAATTTGGAGGC
TGAAGACCTTACATAAATGCATTTGCTGtttctttagcttttttgacaat
attttagttagaagggattgttttcctcaaggcccacaaacaaattctaa
ctttgattttttggaaattttattcaacttgATGCCTGACACCTGAAGCT
TGAAGTAGCATCTAAAGGTAAGGTTTACATTCACTGCATTTTGTAGTTTC
TTTTATGTTAGCAGGAATCAGTGTCAGTTGAGActgaaatattgactttt
tccCAGTTCTGTCAAGTATGATTTTGTGCACGTCAAAAATCTTTAATCTC
TGTAAAGTTTCTTCTGAGAAAGAAGGCCTAAATTTTAATAGATACTactt
tctgtttatttttttgttgggcTTGATTGAGTTTAAAGTTAGctatcttt
tatattttttgatagtcaatttttcagcttgGCACTTGAGTGACATATTT
CAATAACCAATGCATTtctacaaaattcaaccaacacctttcacGATATC
AGACCGACACCCTCTACGGTGACTAAACAACACTTTCTGCGATATCTAAA
TAACACTTTCCACGGCGGCTGATCAACACTTTCCATTATGACTGAAGAAA
ACCATCCACGATATCTGAACAACAATTTCCACAACAGATCTGAACAACGA
CACCTTCTATGATACAAAAGCAGTACTCAAGCATCTTGAAAGATC
Run BLAST on NCBI

transcript from alignment at sc0001592:69090..69834+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037231 ID=TCONS_00037231|Name=TCONS_00037231|organism=Clytia hemisphaerica|type=transcript|length=745bp|location=Sequence derived from alignment at sc0001592:69090..69834+ (Clytia hemisphaerica)
TGGTTCTGGGTCTGGTGCAGAAGAATGCTCTTGAAGGATAATTTGGAGGC
TGAAGACCTTACATAAATGCATTTGCTGtttctttagcttttttgacaat
attttagttagaagggattgttttcctcaaggcccacaaacaaattctaa
ctttgattttttggaaattttattcaacttgATGCCTGACACCTGAAGCT
TGAAGTAGCATCTAAAGGTAAGGTTTACATTCACTGCATTTTGTAGTTTC
TTTTATGTTAGCAGGAATCAGTGTCAGTTGAGActgaaatattgactttt
tccCAGTTCTGTCAAGTATGATTTTGTGCACGTCAAAAATCTTTAATCTC
TGTAAAGTTTCTTCTGAGAAAGAAGGCCTAAATTTTAATAGATACTactt
tctgtttatttttttgttgggcTTGATTGAGTTTAAAGTTAGctatcttt
tatattttttgatagtcaatttttcagcttgGCACTTGAGTGACATATTT
CAATAACCAATGCATTtctacaaaattcaaccaacacctttcacGATATC
AGACCGACACCCTCTACGGTGACTAAACAACACTTTCTGCGATATCTAAA
TAACACTTTCCACGGCGGCTGATCAACACTTTCCATTATGACTGAAGAAA
ACCATCCACGATATCTGAACAACAATTTCCACAACAGATCTGAACAACGA
CACCTTCTATGATACAAAAGCAGTACTCAAGCATCTTGAAAGATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022031XLOC_022031Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037231-exon-sc0001592-1491911889:69090..69834TCONS_00037231-exon-sc0001592-1491911889:69090..69834Clytia hemisphaericaexon
TCONS_00037231-exon-sc0001592-1510915933:69090..69834TCONS_00037231-exon-sc0001592-1510915933:69090..69834Clytia hemisphaericaexon
TCONS_00037231-exon-sc0001592-1575043694:69090..69834TCONS_00037231-exon-sc0001592-1575043694:69090..69834Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001592supercontigsc0001592:69090..69834 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.954382	0.906735	1.21988	0.547633	4.17653	3.08882	5.61093	5.42687	4.75505	3.38276	5.64453	3.60284	2.23731	1.71833	0.547094	0.893802	1.7562	0.75564	0	0.521434	1.11898	0.933814	0.293461	0.679222	5.5821	4.51518	0.671941	0.48497	1.80197	2.90383
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037231 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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