TCONS_00037224 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037224
Unique NameTCONS_00037224
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length387

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037224 ID=TCONS_00037224|Name=TCONS_00037224|organism=Clytia hemisphaerica|type=transcript|length=387bp
TTTAGACATTTGATGTTGTTTCTTGATAAAATCACCAATTGACCAAAGTT
TTGTTGGTTGGTATGATATTGGCGTAACGAGNTCTTGTTTGTGATTTGCT
TCttccaaaatcttttcaaaatcttcttttaGACATTTGATGTTGTTTCT
TGATAAAATCACCAATTGACCAAAGTTTTGTTGGTTGGTATGATATTGGC
GTAACGAGTAAATTGTCTTTCTTTTTCCTATTTTGTGTCTTGCAAATGTC
GTGTTTATTTTTCTCTGCGAGTCTTTATTATATTGATGCCATTTATTGAT
GATATTTCGTGTAATTTCTTCTTCTGATACTTTTTCTTGATCAATCTTTA
CTTCTGCAACAGCTGACATGATTCAATTTTATGCTAG
Run BLAST on NCBI

protein sequence of TCONS_00037224-protein

>TCONS_00037224-protein ID=TCONS_00037224-protein|Name=TCONS_00037224-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MSAVAEVKIDQEKVSEEEITRNIINKWHQYNKDSQRKINTTFARHKIGKR
KTIYSLRQYHTNQQNFGQLVILSRNNIKCLKEDFEKILEEANHKQXLVTP
ISYQPTKLWSIGDFIKKQHQMSK
Run BLAST on NCBI

transcript from alignment at sc0001591:40630..41016

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037224 ID=TCONS_00037224|Name=TCONS_00037224|organism=Clytia hemisphaerica|type=transcript|length=387bp|location=Sequence derived from alignment at sc0001591:40630..41016 (Clytia hemisphaerica)
CTAGCATAAAATTGAATCATGTCAGCTGTTGCAGAAGTAAAGATTGATCA
AGAAAAAGTATCAGAAGAAGAAATTACACGAAATATCATCAATAAATGGC
ATCAATATAATAAAGACTCGCAGAGAAAAATAAACACGACATTTGCAAGA
CACAAAATAGGAAAAAGAAAGACAATTTACTCGTTACGCCAATATCATAC
CAACCAACAAAACTTTGGTCAATTGGTGATTTTATCAAGAAACAACATCA
AATGTCtaaaagaagattttgaaaagattttggaaGAAGCAAATCACAAA
CAAGANCTCGTTACGCCAATATCATACCAACCAACAAAACTTTGGTCAAT
TGGTGATTTTATCAAGAAACAACATCAAATGTCTAAA

Coding sequence (CDS) from alignment at sc0001591:40630..41016

>TCONS_00037224 ID=TCONS_00037224|Name=TCONS_00037224|organism=Clytia hemisphaerica|type=CDS|length=369bp|location=Sequence derived from alignment at sc0001591:40630..41016 (Clytia hemisphaerica)
ATGTCAGCTGTTGCAGAAGTAAAGATTGATCAAGAAAAAGTATCAGAAGA
AGAAATTACACGAAATATCATCAATAAATGGCATCAATATAATAAAGACT
CGCAGAGAAAAATAAACACGACATTTGCAAGACACAAAATAGGAAAAAGA
AAGACAATTTACTCGTTACGCCAATATCATACCAACCAACAAAACTTTGG
TCAATTGGTGATTTTATCAAGAAACAACATCAAATGTCtaaaagaagatt
ttgaaaagattttggaaGAAGCAAATCACAAACAAGANCTCGTTACGCCA
ATATCATACCAACCAACAAAACTTTGGTCAATTGGTGATTTTATCAAGAA
ACAACATCAAATGTCTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022028XLOC_022028Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037224-exon-sc0001591-1491911889:40630..41016TCONS_00037224-exon-sc0001591-1491911889:40630..41016Clytia hemisphaericaexon
TCONS_00037224-exon-sc0001591-1510915933:40630..41016TCONS_00037224-exon-sc0001591-1510915933:40630..41016Clytia hemisphaericaexon
TCONS_00037224-exon-sc0001591-1575043694:40630..41016TCONS_00037224-exon-sc0001591-1575043694:40630..41016Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037224-proteinTCONS_00037224-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001591supercontigsc0001591:40630..41016 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.597939	0	0	0.220785	0.806355	0.424795	1.28124	0.959587	0.167957	0.208042	1.52099	1.06193	1.79746	0	0.565883	0.796461	0.149624	1.07352	0	0	1.15624	2.14613	0.228529	0.771533	0.427987	1.90984	0.273298	0	0	0.22539
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037224 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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