TCONS_00037222 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037222
Unique NameTCONS_00037222
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length583

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037222 ID=TCONS_00037222|Name=TCONS_00037222|organism=Clytia hemisphaerica|type=transcript|length=583bp
GGTTAACTTGTGGGTGTTCCATCTGGTTTTGAAGGTGTTGCCCGTCAAGC
CGATGTAGTACTTTCCAGCGTCGTCATTAGAAGATTTGATATGGCATTGA
TATATAACATCCGACTGTTGGCATTTTCCATTTAACGGGCAGATGGTTTT
GTTGCGGCAGTTGCAGCCAGGGTTGTTATTAGGTTGTGATGGTtttgata
aaacttttttgttgtgGGTGGAGATGATACTGGACATATTAGGTAAGCAA
CTATAGCTCACTTTAACACAGTTTCTATTTAGAATCTTTCTGAATTTATG
GTTTTTTGGGAAGTTATTGTCCAATATGGCAAGGAAGCGTTTTGCGACAT
TGGTTTTGACGTTTATACTCCACGGTGGGTTAAACCAGATGATTTTACGT
GATCtagatttacgattttttgtTGACGGTTTTTTGTACGTTATGGTTTC
ATTGTACCCGCTTGATTTAAGGGCGTTATTGTATTGAGGGGCCGCCTTTT
TGAAGATCGGTTCGCTTGACGAAATTTTTGAGATACGGTCGGAAATCATT
GAAGGTATATATTTGATGATATTTGGAGGGTGA
Run BLAST on NCBI

protein sequence of TCONS_00037222-protein

>TCONS_00037222-protein ID=TCONS_00037222-protein|Name=TCONS_00037222-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
HPPNIIKYIPSMISDRISKISSSEPIFKKAAPQYNNALKSSGYNETITYK
KPSTKNRKSRSRKIIWFNPPWSINVKTNVAKRFLAILDNNFPKNHKFRKI
LNRNCVKVSYSCLPNMSSIISTHNKKVLSKPSQPNNNPGCNCRNKTICPL
NGKCQQSDVIYQCHIKSSNDDAGKYYIGLTGNTFKTRWNTHKLT
Run BLAST on NCBI

transcript from alignment at sc0001591:678..1260

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037222 ID=TCONS_00037222|Name=TCONS_00037222|organism=Clytia hemisphaerica|type=transcript|length=583bp|location=Sequence derived from alignment at sc0001591:678..1260 (Clytia hemisphaerica)
TCACCCTCCAAATATCATCAAATATATACCTTCAATGATTTCCGACCGTA
TCTCAAAAATTTCGTCAAGCGAACCGATCTTCAAAAAGGCGGCCCCTCAA
TACAATAACGCCCTTAAATCAAGCGGGTACAATGAAACCATAACGTACAA
AAAACCGTCAacaaaaaatcgtaaatctaGATCACGTAAAATCATCTGGT
TTAACCCACCGTGGAGTATAAACGTCAAAACCAATGTCGCAAAACGCTTC
CTTGCCATATTGGACAATAACTTCCCAAAAAACCATAAATTCAGAAAGAT
TCTAAATAGAAACTGTGTTAAAGTGAGCTATAGTTGCTTACCTAATATGT
CCAGTATCATCTCCACCcacaacaaaaaagttttatcaaaACCATCACAA
CCTAATAACAACCCTGGCTGCAACTGCCGCAACAAAACCATCTGCCCGTT
AAATGGAAAATGCCAACAGTCGGATGTTATATATCAATGCCATATCAAAT
CTTCTAATGACGACGCTGGAAAGTACTACATCGGCTTGACGGGCAACACC
TTCAAAACCAGATGGAACACCCACAAGTTAACC

Coding sequence (CDS) from alignment at sc0001591:678..1260

>TCONS_00037222 ID=TCONS_00037222|Name=TCONS_00037222|organism=Clytia hemisphaerica|type=CDS|length=582bp|location=Sequence derived from alignment at sc0001591:678..1260 (Clytia hemisphaerica)
CACCCTCCAAATATCATCAAATATATACCTTCAATGATTTCCGACCGTAT
CTCAAAAATTTCGTCAAGCGAACCGATCTTCAAAAAGGCGGCCCCTCAAT
ACAATAACGCCCTTAAATCAAGCGGGTACAATGAAACCATAACGTACAAA
AAACCGTCAacaaaaaatcgtaaatctaGATCACGTAAAATCATCTGGTT
TAACCCACCGTGGAGTATAAACGTCAAAACCAATGTCGCAAAACGCTTCC
TTGCCATATTGGACAATAACTTCCCAAAAAACCATAAATTCAGAAAGATT
CTAAATAGAAACTGTGTTAAAGTGAGCTATAGTTGCTTACCTAATATGTC
CAGTATCATCTCCACCcacaacaaaaaagttttatcaaaACCATCACAAC
CTAATAACAACCCTGGCTGCAACTGCCGCAACAAAACCATCTGCCCGTTA
AATGGAAAATGCCAACAGTCGGATGTTATATATCAATGCCATATCAAATC
TTCTAATGACGACGCTGGAAAGTACTACATCGGCTTGACGGGCAACACCT
TCAAAACCAGATGGAACACCCACAAGTTAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022026XLOC_022026Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037222-exon-sc0001591-1491911889:678..1260TCONS_00037222-exon-sc0001591-1491911889:678..1260Clytia hemisphaericaexon
TCONS_00037222-exon-sc0001591-1510915933:678..1260TCONS_00037222-exon-sc0001591-1510915933:678..1260Clytia hemisphaericaexon
TCONS_00037222-exon-sc0001591-1575043694:678..1260TCONS_00037222-exon-sc0001591-1575043694:678..1260Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037222-proteinTCONS_00037222-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001591supercontigsc0001591:678..1260 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.284581	0.277511	0.107406	0	0.127924	0.202175	0	0.570877	0.239811	0.19803	0.288319	0.315882	0	0	0	0	0	0.0729892	0	0	0	0.268416	0	0	0.305542	0.363585	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037222 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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