TCONS_00037209 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037209
Unique NameTCONS_00037209
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length322

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037209 ID=TCONS_00037209|Name=TCONS_00037209|organism=Clytia hemisphaerica|type=transcript|length=322bp
tttctattttgaaaaaaaaaactccagAACATGCAAAGCCAGGAGCACTC
ACAGAAACATTGATTgcttaaaaattaacattgtactatttcaaactaaa
aaaaaattgaaggcaAAATCATTACAAACCTGTAGTTTGCAGCCCTTCAA
CAGTTTGAATAGCCAGGTACAGTCTCcttttttctttcctctttaGCAAG
CCAGGTGTGGAAAGTGCCTCTGTTTTCCCACCTTTCAAAAATGTATTCGT
CAGCcactaaaatgataaaaatttataatttggtCACAACACACAAGTAA
ACTGTCAACATTATctcttatc
Run BLAST on NCBI

transcript from alignment at sc0001590:63816..64283-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037209 ID=TCONS_00037209|Name=TCONS_00037209|organism=Clytia hemisphaerica|type=transcript|length=468bp|location=Sequence derived from alignment at sc0001590:63816..64283- (Clytia hemisphaerica)
TTTCTATTTTGAAAAAAAAAACTCCAGAACATGCAAAGCCAGGAGCACTC
ACAGAAACATTGATTGCTTAAAAATTAACATTGTACTATTTCAAACTAAA
AAAAAATTGAAGGCAAAATCATTACAAACCTGTAGTTTGCAGCCCTTCAA
CAGTTTGAATAGCCAGGTACAGTCTCCTTTTTTCTTTCCTCTTTAGCAAG
CCAGGTGTGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNGTCTCCTTTTTTCTTTCCTCTTTAGCAAGCCAG
GTGTGGAAAGTGCCTCTGTTTTCCCACCTTTCAAAAATGTATTCGTCAGC
CACTAAAATGATAAAAATTTATAATTTGGTCACAACACACAAGTAAACTG
TCAACATTATCTCTTATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022013XLOC_022013Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037209-exon-sc0001590-1575043694:64080..64283TCONS_00037209-exon-sc0001590-1575043694:64080..64283Clytia hemisphaericaexon
TCONS_00037209-exon-sc0001590-1575043694:63816..63933TCONS_00037209-exon-sc0001590-1575043694:63816..63933Clytia hemisphaericaexon
TCONS_00037209-exon-sc0001590-1510915933:64080..64283TCONS_00037209-exon-sc0001590-1510915933:64080..64283Clytia hemisphaericaexon
TCONS_00037209-exon-sc0001590-1510915933:63816..63933TCONS_00037209-exon-sc0001590-1510915933:63816..63933Clytia hemisphaericaexon
TCONS_00037209-exon-sc0001590-1491911889:64080..64283TCONS_00037209-exon-sc0001590-1491911889:64080..64283Clytia hemisphaericaexon
TCONS_00037209-exon-sc0001590-1491911889:63816..63933TCONS_00037209-exon-sc0001590-1491911889:63816..63933Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001590supercontigsc0001590:63816..64283 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.59781	2.03285	0.710902	0.347753	0	0.339108	0.40361	0.75571	16.312	15.9789	15.927	9.99746	17.035	17.9223	13.6469	15.1787	10.2259	17.1189	35.0355	28.9429	9.56501	5.99348	5.04811	6.87217	0.674112	1.80489	25.5137	27.0927	11.5774	12.432
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037209 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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