TCONS_00037208 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037208
Unique NameTCONS_00037208
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1544

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037208 ID=TCONS_00037208|Name=TCONS_00037208|organism=Clytia hemisphaerica|type=transcript|length=1544bp
CTCGCCATCAAttcggaaatatttttctcgttctgtttgcaaaatttcag
cttcaaagtattTTTGGTTCCTGAGATATGGagattcattttttgttgaa
tttttttgttttactccgtgaaaagtttgaatttcttctttctttcttca
gATGTTTGGGAAATTTTGTACGAAAAGAAATTCGCaaaattcgaagaaat
tttCCGCCAAAAACCGAACATCGTCAACTCGTTGCGTGATGGTTTTGGTT
GGACACTTCTCATGAAGGCTGTTTTGGAAGATCGTTTCGACGTTTTCGTT
CACTTGATGAATTATCCTCATGATTTTTCACTCGTGGACGATCGTGGTTG
GAACATTCTTCATTATGTTGGTTGGAAAGGAAAAGTTCGTCATTTGGAAA
AGTTTGATCAACAAACAATCGAAAAGTTGATCGATGGAAGAACCAATGCG
AACAACACACCATTGCATAAAGCAGCATATTTCaacaatcatgacgtcat
cagatggtTGTTGGCCAAAGGAGCGGATCatgaattaaaaaacaaagaag
gTCAACGCCCTGATGAACAACTTTATTGTGATGGTGTTACCACAGAAATA
TTTCGATCGTTTCGTTCGTTTTGATTGATTGATTGTTTCCATTGTTTGTT
TCATCGgttccaatgacgtcatcggttccAAATTATTTCCACattcCCAG
CATGACAGCACGCATGAGAAGTTACACCCGTCGTTCTTGACGCCATTTCT
ACGATTACGTTATTTATTCATTCCGTCTCTACATTTCTGTTTGCGTTCAA
ACATTACTACCTtcattttggcttgtttttagaTGTATTTTCACCACTTC
ACTAATGTGACTATTATTTTACGTCAACCGTCACTAGTTTTGGTGGCGTG
TCTATTCTTACGCCCTCAACGTTTCCGCCTTATGGATTACCTTGGTTGAA
TATGAAAAAGAGTACAGTGCTAAAACTCATGTCACTATTGGTTTCGATTG
GATCATTTCCCTTGTAAANAAAAAGAGTACAGTGCTAAAACTCATGTCAC
TATTGGTTTCGATTGGATCATTTCCCTTGTAAATATCCGATTTTTTTCGC
TCACTCGGTGAACTTTTGTTCAGTcagtcggggaaaatttttagaTACCA
TTTTTAGTTTCCATTTAGTGGAAAACCCTGTCAACAGTGGCCTCGGTGAA
AACATGAATTTTTCTAACCTTTGCTCCCAGGACTTTTTTGTACGGTTTAG
GTTTGACACCTCCACGGGTGAAACANATCGgtgaaaacataaatttttct
aACCTTTGCTCTCAGGACTTTTTTGTACGGTTTAGGTTTGACACCTCCAC
GGGTGAAAAAATCAAGGTTAAATTATCTAAGTACTGTCAAAGTTTCACGG
TCTTTTTCGGGAGAAACTCATGGGCGGTAAATATTTGATGGTTTCAATTT
AAAATTGCTCTTCATTTCAAGCCGATGAACGTTTTTTGGTATATACACga
caaatatttatattttatttagatAAGAATATTTCATTGTATAG
Run BLAST on NCBI

protein sequence of TCONS_00037208-protein

>TCONS_00037208-protein ID=TCONS_00037208-protein|Name=TCONS_00037208-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MKAVLEDRFDVFVHLMNYPHDFSLVDDRGWNILHYVGWKGKVRHLEKFDQ
QTIEKLIDGRTNANNTPLHKAAYFNNHDVIRWLLAKGADHELKNKEGQRP
DEQLYCDGVTTEIFRSFRSF
Run BLAST on NCBI

transcript from alignment at sc0001590:57201..59644-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037208 ID=TCONS_00037208|Name=TCONS_00037208|organism=Clytia hemisphaerica|type=transcript|length=2444bp|location=Sequence derived from alignment at sc0001590:57201..59644- (Clytia hemisphaerica)
CTCGCCATCAATTCGGAAATATTTTTCTCGTTCTGTTTGCAAAATTTCAG
CTTCAAAGTATTTTTGGTTCCTGAGATATGGAGATTCATTTTTTGTTGAA
TTTTTTTGTTTTACTCCGTGAAAAGTTTGAATTTCTTCTTTCTTTCTTCA
GATGTTTGGGAAATTTTGTACGAAAAGAAATTCGCAAAATTCGAAGAAAT
TTTCCGCCAAAAACCGAACATCGTCAACTCGTTGCGTGATGGTTTTGGTT
GGACACTTCTCATGAAGGCTGTTTTGGAAGATCGTTTCGACGTTTTCGTT
CACTTGATGAATTATCCTCATGATTTTTCACTCGTGGACGATCGTGGTTG
GAACATTCTTCATTATGTTGGTTGGAAAGGAAAAGTTCGTCATTTGGAAA
AGTTTGATCAACAAACAATCGAAAAGTTGATCGATGGAAGAACCAATGCG
AACAACACACCATTGCATAAAGCAGCATATTTCAACAATCATGACGTCAT
CAGATGGTTGTTGGCCAAAGGAGCGGATCATGAATTAAAAAACAAAGAAG
GTCAACGCCCTGATGAACAACTTTATTGTGATGGTGTTACCACAGAAATA
TTTCGATCGTTTCGTTCGTTTTGGTAAGAAACTTTTTCATGATTTTTTTA
GGGTGGGATTATTTTTTGGAGTTTGAAAGAGTTTTTATTCTATTATTGCG
AGAAGTGTTGAAACTTCTTTTTTAATTTTTTAAATAGAAATGAAAAGTTA
TTTAGAAAGTCTTTAAAATTTTTCAGTCGGATAAATTTTACCTTTTCGGA
GTTCGAATGAAACGAATGAATTGATTTCGATTTTTTGATTGAGATTTTTC
ATTGCATTGGAGCAGACATATTTTGGAGACAATTTGCAAAATAGATGTTT
GTGAAATGTTTTCTCAGGTTGTTATGAATTTATTTTTTGGTGAAGAAAGA
AATTGTCGTTTTTTTTATTTTATCGTACGTCTCTTATGATATTGTTCATG
TGTTTCAAATGTTTTTCATTCGATTATTTATTTCAGATTGATTGATTGTT
TCCATTGTTTGTTTCATCGGTTCCAATGACGTCATCGGTTCCAAATTATT
TCCACGTAAGTATATTTAGTCATTTACTTGGTTTCCGAATGAAAGCCTAA
AGCCTAAATATTTCTGCATACCAGAAATTTTTTTTGAAAAAAGTGAATCC
ATTCAAAAAACCTAGAAAGGAGGGCTTGGTTAGCCTGTACCAAACTCTTC
TTGGTGGACTACAATTCAGACTTTTATGTGAATGAGACGAATCCACGCAT
GTCTCTGTTGTAAAGAGTTGAATTATTTTTAATTAGTCGAATAAATGCAA
TTGTTTCTTTCTGTAGTAAAAATAGCGTATAAAGCCTAAAATGGCGATAC
CTCAAAGAAGTTAACTAGTTCTTATAAAAAGACTCCGTATTCCGCGTTTT
TCAAACTTTTCCACCACATTAGATTTCAGCACTCTCATTAGCCGCTTTTT
ACCATTTTTATAAAAACTATTTATTCATCTTCGAGTCAGCAAGTTTTGTA
GTGCAAATTAACCTCCTAAATTTTCAATTTTTTAATTTTTAGATTCCCAG
CATGACAGCACGCATGAGAAGTTACACCCGTCGTTCTTGACGCCATTTCT
ACGATTACGTTATTTATTCATTCCGTCTCTACATTTCTGTTTGCGTTCAA
ACATTACTACCTTCATTTTGGCTTGTTTTTAGATGTATTTTCACCACTTC
ACTAATGTGACTATTATTTTACGTCAACCGTCACTAGTTTTGGTGGCGTG
TCTATTCTTACGCCCTCAACGTTTCCGCCTTATGGATTACCTTGGTTGAA
TATGAAAAAGAGTACAGTGCTAAAACTCATGTCACTATTGGTTTCGATTG
GATCATTTCCCTTGTAAANAAAAAGAGTACAGTGCTAAAACTCATGTCAC
TATTGGTTTCGATTGGATCATTTCCCTTGTAAATATCCGATTTTTTTCGC
TCACTCGGTGAACTTTTGTTCAGTCAGTCGGGGAAAATTTTTAGATACCA
TTTTTAGTTTCCATTTAGTGGAAAACCCTGTCAACAGTGGCCTCGGTGAA
AACATGAATTTTTCTAACCTTTGCTCCCAGGACTTTTTTGTACGGTTTAG
GTTTGACACCTCCACGGGTGAAACANATCGGTGAAAACATAAATTTTTCT
AACCTTTGCTCTCAGGACTTTTTTGTACGGTTTAGGTTTGACACCTCCAC
GGGTGAAAAAATCAAGGTTAAATTATCTAAGTACTGTCAAAGTTTCACGG
TCTTTTTCGGGAGAAACTCATGGGCGGTAAATATTTGATGGTTTCAATTT
AAAATTGCTCTTCATTTCAAGCCGATGAACGTTTTTTGGTATATACACGA
CAAATATTTATATTTTATTTAGATAAGAATATTTCATTGTATAG

Coding sequence (CDS) from alignment at sc0001590:57201..59644-

>TCONS_00037208 ID=TCONS_00037208|Name=TCONS_00037208|organism=Clytia hemisphaerica|type=CDS|length=726bp|location=Sequence derived from alignment at sc0001590:57201..59644- (Clytia hemisphaerica)
AATGAAGGCTGTTTTGGAAGATCGTTTCGACGTTTTCGTTCACTTGATGA
ATTATCCTCATGATTTTTCACTCGTGGACGATCGTGGTTGGAACATTCTT
CATTATGTTGGTTGGAAAGGAAAAGTTCGTCATTTGGAAAAGTTTGATCA
ACAAACAATCGAAAAGTTGATCGATGGAAGAACCAATGCGAACAACACAC
CATTGCATAAAGCAGCATATTTCAACAATCATGACGTCATCAGATGGTTG
TTGGCCAAAGGAGCGGATCATGAATTAAAAAACAAAGAAGGTCAACGCCC
TGATGAACAACTTTATTGTGATGGTGTTACCACAGAAATATTTCGATCGT
TTCGTTCGTTTTGAATGAAGGCTGTTTTGGAAGATCGTTTCGACGTTTTC
GTTCACTTGATGAATTATCCTCATGATTTTTCACTCGTGGACGATCGTGG
TTGGAACATTCTTCATTATGTTGGTTGGAAAGGAAAAGTTCGTCATTTGG
AAAAGTTTGATCAACAAACAATCGAAAAGTTGATCGATGGAAGAACCAAT
GCGAACAACACACCATTGCATAAAGCAGCATATTTCAACAATCATGACGT
CATCAGATGGTTGTTGGCCAAAGGAGCGGATCATGAATTAAAAAACAAAG
AAGGTCAACGCCCTGATGAACAACTTTATTGTGATGGTGTTACCACAGAA
ATATTTCGATCGTTTCGTTCGTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022012XLOC_022012Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037208-proteinTCONS_00037208-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037208-exon-sc0001590-1575043694:59022..59644TCONS_00037208-exon-sc0001590-1575043694:59022..59644Clytia hemisphaericaexon
TCONS_00037208-exon-sc0001590-1575043694:58540..58608TCONS_00037208-exon-sc0001590-1575043694:58540..58608Clytia hemisphaericaexon
TCONS_00037208-exon-sc0001590-1575043694:57201..58052TCONS_00037208-exon-sc0001590-1575043694:57201..58052Clytia hemisphaericaexon
TCONS_00037208-exon-sc0001590-1510915933:59022..59644TCONS_00037208-exon-sc0001590-1510915933:59022..59644Clytia hemisphaericaexon
TCONS_00037208-exon-sc0001590-1510915933:58540..58608TCONS_00037208-exon-sc0001590-1510915933:58540..58608Clytia hemisphaericaexon
TCONS_00037208-exon-sc0001590-1510915933:57201..58052TCONS_00037208-exon-sc0001590-1510915933:57201..58052Clytia hemisphaericaexon
TCONS_00037208-exon-sc0001590-1491911889:59022..59644TCONS_00037208-exon-sc0001590-1491911889:59022..59644Clytia hemisphaericaexon
TCONS_00037208-exon-sc0001590-1491911889:58540..58608TCONS_00037208-exon-sc0001590-1491911889:58540..58608Clytia hemisphaericaexon
TCONS_00037208-exon-sc0001590-1491911889:57201..58052TCONS_00037208-exon-sc0001590-1491911889:57201..58052Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001590supercontigsc0001590:57201..59644 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.205416	0.191173	0.12298	0.0613728	0.825289	0.98317	1.61439	1.64452	1.63363	2.01008	2.2722	1.47616	6.15737	5.9268	2.60205	2.46278	1.88751	3.21218	5.34724	4.84853	3.91373	3.63886	2.89553	3.67081	3.43314	4.27071	18.4674	18.7752	13.3999	14.4328
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037208 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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