TCONS_00037207 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037207
Unique NameTCONS_00037207
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1904

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037207 ID=TCONS_00037207|Name=TCONS_00037207|organism=Clytia hemisphaerica|type=transcript|length=1904bp
NNTACGGTGACATGCTTTTTCTCACCACCTGATGTTCTCACCACACATTC
TTTGGTACCGGTTTTAGTGATGCTTTTAGCTGGTACCATATCAAAAAATG
CCGGTGTTTCGTCCATGTTCCCAACAAGTGACAAGGGATATTTACCGATC
CTCATGTAGCGACCAGCATCAAGATAGAACTTAGTGATAGAAGATTCTAG
TTGCTGGGGAAGCTTTTGGCTGACAGATGTTCGGCTGCGTAGGGATAGTC
GATGCCTTGCGAAAAACTTTTGGACCCAACCACGACTAGCATTGAATGTG
GGATTGTGAGGGCAGATAACACTTCTTCCCTTCTCCTGTAAAGCGAGCAC
AGATACTGGAAAATGCATATCTCTTAGCTTGAGAATCCAGCATACAAGAT
CATTTTCAACTTCTAAGGGGTATGTTAATGGCCTACCAGCTCCTGAACGG
TTTCCTTTGTCAATCGGTTTAACGTTTCTAGGGAGGGTTTTCACAATATT
ACGAAGGGTGGATTCGTTAACATTAAAAGCTTTGGCAGAAGCCACAAAGT
TTTGCGTGAGTAGGTAGTGTTCTCTCATTTCCCTTTTTGTTTTCTCGGTG
TAACGTTTTCTGGTGGAGTGTTCAATTTCGTTGGCATTCTTCACGCTGTC
AGGGTTTAAGTAAAAGTTGATGATAACTGAATCAAAATACGTGGCTTTTC
GTAAGAGATCGTTGTAGTCATGATTCCTTTCCAGCATTCGATTGATTTGG
TCATCTGTAAGTGAATTTGGTGGTCGTCCGACACGCTTTTTACTCGGTGG
GGGTGCTGCTGCTTTACCtgaaatggtaaaaataataattcaaatacttt
taccaaaaaaataccAACTATATATGGTAATTTTAACGCAAAGGGAAGAT
TTTATTTGTTCTTCGCAGAGCAAAATAGTATGTACTTACTTCTTAGATAT
ACCACAGAGTCATCAACTTGATTTTGTCCAGGTGCCAGGAAAGATGTAAT
AGTTGACTGGCGTTTCCTTTTGGTATTCGATGCTTGTTTTAAAAAACCGA
TTATATTCGTTTGGGTAGACATTTTCTTTCGAAGAACAAGAACAAAATAA
ANaatgatgcaaaaaatcattaatttttttatcattcttacgcggatcat
ttcaataggatactggtctatctattttattaggtCGTTGATCCAATCAA
ACAATTTACAAAGAAGTCAACCGAATCTTGAAACATTTCACATCGAACTT
TCCTGCAGAAAAGTTATGTAAAGATTTATTCAAATGTGAGAAAGAAAAGT
GTgaagttgaaaagaaaacagtGGTTACTGAAGACAAAACTGGCAATGGA
AAATCAAGGTGTCTTCAAGGACCACCAGGGCCTCCGGGTCCACCAGGCCC
AGCAGGACCAGGCCTCGAAGAGCCGAAGCTTGTATCAAGCACACTGAGCA
ATGGTCAAGTTAACATCACAAAAACTAAAGTGTTCGAGTGCAAATTTTAT
GGTAATCCAATTCCAGACATTGAATGGAAAGTTCCAGCAAAGAGCTTCCA
AGTAGATTCCACAGttgacaaaaaaagatttgagatcacGAGTCATTTGA
CGATACATAACGTGACTTTGTGAACAAGGACGTGTTGAATGCAGTGCTAA
AAGTTTGCTTGGTGAAGTTTATGAATCTGGCAATTTAACTGTTTTAAGTA
AGAAATTATAGAGAATTGTCAAGGGATTTTTAGGGAGTatatgttgaaaa
tttcatctgAAAATAAGTTCATGTCCAAGTGCAAGCAAAAATAAAGCACC
TCTgagtttaaagggacattaaagtagtaaaatgtaaacattgcgcgaac
cacgtgtcattaaagagaacaattaaaatcacgtgtccaaaacaaacttg
taaa
Run BLAST on NCBI

transcript from alignment at sc0001590:48783..51482-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037207 ID=TCONS_00037207|Name=TCONS_00037207|organism=Clytia hemisphaerica|type=transcript|length=2700bp|location=Sequence derived from alignment at sc0001590:48783..51482- (Clytia hemisphaerica)
NNTACGGTGACATGCTTTTTCTCACCACCTGATGTTCTCACCACACATTC
TTTGGTACCGGTTTTAGTGATGCTTTTAGCTGGTACCATATCAAAAAATG
CCGGTGTTTCGTCCATGTTCCCAACAAGTGACAAGGGATATTTACCGATC
CTCATGTAGCGACCAGCATCAAGATAGAACTTAGTGATAGAAGATTCTAG
TTGCTGGGGAAGCTTTTGGCTGACAGATGTTCGGCTGCGTAGGGATAGTC
GATGCCTTGCGAAAAACTTTTGGACCCAACCACGACTAGCATTGAATGTG
GGATTGTGAGGGCAGATAACACTTCTTCCCTTCTCCTGTAAAGCGAGCAC
AGATACTGGAAAATGCATATCTCTTAGCTTGAGAATCCAGCATACAAGAT
CATTTTCAACTTCTAAGGGGTATGTTAATGGCCTACCAGCTCCTGAACGG
TTTCCTTTGTCAATCGGTTTAACGTTTCTAGGGAGGGTTTTCACAATATT
ACGAAGGGTGGATTCGTTAACATTAAAAGCTTTGGCAGAAGCCACAAAGT
TTTGCGTGAGTAGGTAGTGTTCTCTCATTTCCCTTTTTGTTTTCTCGGTG
TAACGTTTTCTGGTGGAGTGTTCAATTTCGTTGGCATTCTTCACGCTGTC
AGGGTTTAAGTAAAAGTTGATGATAACTGAATCAAAATACGTGGCTTTTC
GTAAGAGATCGTTGTAGTCATGATTCCTTTCCAGCATTCGATTGATTTGG
TCATCTGTAAGTGAATTTGGTGGTCGTCCGACACGCTTTTTACTCGGTGG
GGGTGCTGCTGCTTTACCTGAAATGGTAAAAATAATAATTCAAATACTTT
TACCAAAAAAATACCAACTATATATGGTAATTTTAACGCAAAGGGAAGAT
TTTATTTGTTCTTCGCAGAGCAAAATAGTATGTACTTACTTCTTAGATAT
ACCACAGAGTCATCAACTTGATTTTGTCCAGGTGCCAGGAAAGATGTAAT
AGTTGACTGGCGTTTCCTTTTGGTATTCGATGCTTGTTTTAAAAAACCGA
TTATATTCGTTTGGGTAGACATTTTCTTTCGAAGAACAAGAACAAAATAA
ANAATGATGCAAAAAATCATTAATTTTTTTATCATTCTTACGCGGATCAT
TTCAATAGGATACTGGTCTATCTATTTTATTAGGTCGTTGATCCAATCAA
ACAATTTACAAAGAAGTCAACCGAATCTTGAAACATTTCACATCGAACTT
TCCTGCAGAAAAGTTATGTAAAGATTTATTCAAATGTGAGAAAGGTAAAA
TGTTTTATCGATCTAAACTTATCGAATATCGATCTCTTCCCAATATATGT
AAGTATGAATTTAGGTCCTTCCCTCATAGACAATTTCTCGTAGACCCGGT
AGGACCCCTTCTCACTGACAAAATTGGCCAAAATACGGGCCCCAGAGGAA
AATATTTGTCCTCACTGAAAATAATCAAATAAATAAACCCTCTCTGCAAA
GTATTGTGCTTTTTTCCATTCCAGTCAGTTTTCTGACTTGAAAAAAATGG
AATTCAAATCCCCAGCAATGAATAAAACATGGCATATCAATAAACTCAAT
CGAGTTATTTTTACCCCTATTGGCTGAAAAAATCCTACCAGGTCTATGAA
TNGTTTTTTTTACCCCCATTGGCTGAAAAAATCCTACCAGGTCTATGATA
GGGAACTGTCTATATAGTATTTAAATTCTGAAGATGTTAGTTAATTTCTC
TAGAAAAGTGTGAAGTTGAAAAGAAAACAGTGGTTACTGAAGACAAAACT
GGCAATGGAAAATCAAGGTGTCTTCAAGGACCACCAGGGCCTCCGGTAAG
ATATCTCTACAAGAGAGAAAGGGCGGAAATATAAAGATTTTCCTTTGATG
AATAATTTTGATTTTAAATCATTAAAGTGGGAGAGGTGTGCTTCTGGGTA
GAGATTCAAGGTTGATTCATGTGCAGATTTAGAATGTTGACTTTTTAAGT
AAGTTTGAATAAGTTTTGACACTTATTCACACACCTCGTAGAACCTAGTC
GAACAGGATATTGGATTTAGACCTGTAACATTCTTGATAGCTTTATTTTT
ATTCATTGACCAAATATTTCATAAATCTCAAAACCATTCCTCATTTATTT
AATGTCACTTCTTTTGTTGTTCTGCTCTGAAGGGTCCACCAGGCCCAGCA
GGACCAGGCCTCGAAGAGCCGAAGCTTGTATCAAGCACACTGAGCAATGG
TCAAGTTAACATCACAAAAACTAAAGTGTTCGAGTGCAAATTTTATGGTA
ATCCAATTCCAGACATTGAATGGAAAGTTCCAGCAAAGAGCTTCCAAGTA
GATTCCACAGTTGACAAAAAAAGATTTGAGATCACGAGTCATTTGACGAT
ACATAACGTGACTTTGTGAACAAGGACGTGTTGAATGCAGTGCTAAAAGT
TTGCTTGGTGAAGTTTATGAATCTGGCAATTTAACTGTTTTAAGTAAGAA
ATTATAGAGAATTGTCAAGGGATTTTTAGGGAGTATATGTTGAAAATTTC
ATCTGAAAATAAGTTCATGTCCAAGTGCAAGCAAAAATAAAGCACCTCTG
AGTTTAAAGGGACATTAAAGTAGTAAAATGTAAACATTGCGCGAACCACG
TGTCATTAAAGAGAACAATTAAAATCACGTGTCCAAAACAAACTTGTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022011XLOC_022011Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037207-exon-sc0001590-1575043694:50189..51482TCONS_00037207-exon-sc0001590-1575043694:50189..51482Clytia hemisphaericaexon
TCONS_00037207-exon-sc0001590-1575043694:49638..49729TCONS_00037207-exon-sc0001590-1575043694:49638..49729Clytia hemisphaericaexon
TCONS_00037207-exon-sc0001590-1575043694:48783..49300TCONS_00037207-exon-sc0001590-1575043694:48783..49300Clytia hemisphaericaexon
TCONS_00037207-exon-sc0001590-1510915933:50189..51482TCONS_00037207-exon-sc0001590-1510915933:50189..51482Clytia hemisphaericaexon
TCONS_00037207-exon-sc0001590-1510915933:49638..49729TCONS_00037207-exon-sc0001590-1510915933:49638..49729Clytia hemisphaericaexon
TCONS_00037207-exon-sc0001590-1510915933:48783..49300TCONS_00037207-exon-sc0001590-1510915933:48783..49300Clytia hemisphaericaexon
TCONS_00037207-exon-sc0001590-1491911889:50189..51482TCONS_00037207-exon-sc0001590-1491911889:50189..51482Clytia hemisphaericaexon
TCONS_00037207-exon-sc0001590-1491911889:49638..49729TCONS_00037207-exon-sc0001590-1491911889:49638..49729Clytia hemisphaericaexon
TCONS_00037207-exon-sc0001590-1491911889:48783..49300TCONS_00037207-exon-sc0001590-1491911889:48783..49300Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001590supercontigsc0001590:48783..51482 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.12145	0.524659	1.18867	0.546929	1.92283	1.05668	4.9054	4.62203	7.03778	8.54324	8.49282	6.82596	18.302	18.5704	29.3611	31.5363	9.62342	10.9138	9.46715	13.3667	7.70268	6.94018	7.33686	7.04301	14.2971	13.5763	4.06939	6.4846	38.834	43.3271
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006600HTH_CenpB_DNA-bd_dom
IPR011991WHTH_DNA-bd_dom
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037207 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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