TCONS_00037184 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037184
Unique NameTCONS_00037184
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length477

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037184 ID=TCONS_00037184|Name=TCONS_00037184|organism=Clytia hemisphaerica|type=transcript|length=477bp
aaaaaaatcattaccCTAGAACAATTGGTAAGAGGTCTTTTGGTATACGC
ATTAAAAAGTATTCTGGAATATAAACTTTTTCCCAAAACAAACGTGTACT
CTCAATAATCCGTTGCTGCAGCTCTGAGTCAGGAAGGATTCTTTCAATAC
TGTTGGGTCCTTTGTCACTATTTAAAACAAAGTCACAATACCCAGTTCCA
GTAACCAGCAATTGGAGCTGAATCTGAAAAAAGTACATATGAGATTTTTT
CAGAACTAGTTTTTCATTAGACACAGAAAAACACTGTCTTGACAGTTCAG
GCTGAAGACGTTTTTCATTGGCAACATCATTCATGATATCACAGAATGAA
GTCTTAAAATCTTCAAACATTTAACTTCAACGATTCCCTCAATCTTACCA
TCATTGAAAATTAAACCATCGGGGCTAGCAGCTAGATGGCTATAGTTCTT
GTTTATCCAAAACCCACTGACACCAAC
Run BLAST on NCBI

protein sequence of TCONS_00037184-protein

>TCONS_00037184-protein ID=TCONS_00037184-protein|Name=TCONS_00037184-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
MFEDFKTSFCDIMNDVANEKRLQPELSRQCFSVSNEKLVLKKSHMYFFQI
QLQLLVTGTGYCDFVLNSDKGPNSIERILPDSELQQRIIESTRLFWEKVY
IPEYFLMRIPKDLLPIVLG
Run BLAST on NCBI

transcript from alignment at sc0001587:42269..42745

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037184 ID=TCONS_00037184|Name=TCONS_00037184|organism=Clytia hemisphaerica|type=transcript|length=477bp|location=Sequence derived from alignment at sc0001587:42269..42745 (Clytia hemisphaerica)
GTTGGTGTCAGTGGGTTTTGGATAAACAAGAACTATAGCCATCTAGCTGC
TAGCCCCGATGGTTTAATTTTCAATGATGGTAAGATTGAGGGAATCGTTG
AAGTTAAATGTTTGAAGATTTTAAGACTTCATTCTGTGATATCATGAATG
ATGTTGCCAATGAAAAACGTCTTCAGCCTGAACTGTCAAGACAGTGTTTT
TCTGTGTCTAATGAAAAACTAGTTCTGAAAAAATCTCATATGTACTTTTT
TCAGATTCAGCTCCAATTGCTGGTTACTGGAACTGGGTATTGTGACTTTG
TTTTAAATAGTGACAAAGGACCCAACAGTATTGAAAGAATCCTTCCTGAC
TCAGAGCTGCAGCAACGGATTATTGAGAGTACACGTTTGTTTTGGGAAAA
AGTTTATATTCCAGAATACTTTTTAATGCGTATACCAAAAGACCTCTTAC
CAATTGTTCTAGggtaatgattttttt

Coding sequence (CDS) from alignment at sc0001587:42269..42745

>TCONS_00037184 ID=TCONS_00037184|Name=TCONS_00037184|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at sc0001587:42269..42745 (Clytia hemisphaerica)
ATGTTTGAAGATTTTAAGACTTCATTCTGTGATATCATGAATGATGTTGC
CAATGAAAAACGTCTTCAGCCTGAACTGTCAAGACAGTGTTTTTCTGTGT
CTAATGAAAAACTAGTTCTGAAAAAATCTCATATGTACTTTTTTCAGATT
CAGCTCCAATTGCTGGTTACTGGAACTGGGTATTGTGACTTTGTTTTAAA
TAGTGACAAAGGACCCAACAGTATTGAAAGAATCCTTCCTGACTCAGAGC
TGCAGCAACGGATTATTGAGAGTACACGTTTGTTTTGGGAAAAAGTTTAT
ATTCCAGAATACTTTTTAATGCGTATACCAAAAGACCTCTTACCAATTGT
TCTAGggtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021999XLOC_021999Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037184-proteinTCONS_00037184-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037184-exon-sc0001587-1491911889:42269..42745TCONS_00037184-exon-sc0001587-1491911889:42269..42745Clytia hemisphaericaexon
TCONS_00037184-exon-sc0001587-1510915933:42269..42745TCONS_00037184-exon-sc0001587-1510915933:42269..42745Clytia hemisphaericaexon
TCONS_00037184-exon-sc0001587-1575043694:42269..42745TCONS_00037184-exon-sc0001587-1575043694:42269..42745Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001587supercontigsc0001587:42269..42745 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.178521	0.28214	0	0	0.111554	0	0	0.705313	0	0.274296	0.300678	0	0.397508	0	0	0	0	0	0	0	0.14213	0.126848	0	0	0	0.1497
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011604Exonuc_phg/RecB_C
IPR011335Restrct_endonuc-II-like
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0003677DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
molecular_function GO:0004518 nuclease activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037184 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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