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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037178 ID=TCONS_00037178|Name=TCONS_00037178|organism=Clytia hemisphaerica|type=transcript|length=1913bp
ctcaaatttgtcagattggtattggtactaaattagggggtgggtcccat
gatattttgtcaaattcaaaaagtcatgttggtatcgataccaaattaag
gggttggtcccccttttttctgataattaagattttcaagttggtatcga
taccaaaataagggggtgggtcccccctttttctgaaaatcatgattttc
aagttggtatcgataccaattttggggtggtggtgttaacttagctcaaa
aggtcaaaagtcaggttttcgGGCTATGGGCTGGTATTATAAacgttgac
ccccccccctgaagaTACACCATATTAGCGTTCGAATTGGTATACTACAC
ATCAGCGATTAGGAAACCTTTCCAATTTAGGTACTGTCCCTTTTGCACTC
CTGATGGATGACTCTACCCATTCTCCGAGTTCTGGGAAAAAAGACATCGA
AGCTCTAAAAAATTCGGCTTTGAAGCGCCACAACTGGGACGTTTCATCAA
CTACCTCATCGACTTCGAATAGCACTAACAACTTCTCCACCAAAGGCACA
TGCTTCCAAGGTAAGAAGTTAACAATGCTTGCTTTAGGTGCTGTCAAGGT
AGNAAAGGCACATGCTTCCAAGGTAAGAAGTTAACAATGCTTGCTTTAGG
TGCTGTCAAGGTAGCAAGAAGTTTAGCCAAGTCGATCACTTCTGCTCCTT
TTCCTCCAAGAACCATGTATTGTACGGCTAACAGAAGTGCTTCATCTGAA
CCATTGAGCTCAGCAACGGCTGTCAACAGTTGCGTATCTGTAAGAGACTC
CCTATCAAGTTTGTGAAGAGCCAATTTCCTAACATTGTTGTTTATCAATG
TCCTTTTGTCTCCATATGTTTCTTTGTCAATAAAAACTCGATCCAAGCCT
TTGTTTGGGGTAACAATCGCAGCctctttattttttgtttcaatagGAAT
GACGGTCGATTGCTTGAGAGTTATTCCTATTTTGGTGCCATCACATGCCA
GCATATGGATGTTATCGCCACAACCAAAGCAAGGCTTACGGAAGTCGATC
CCCATCGCAGAAGCCCAAGCAAACCACCACTTGATGAAAGTATTCTTAGT
CATGAATGGCTTCTCCGACAGGAATCGACCATAATTTGCATTCATGACCT
TGACGAAACCGGTGAAAGTTTGCTTGCTCGTCATCACCAAATCGACAAAA
TTCCATCCGACTTCATAGCTACAGCTCACGGCATTCGTGGAACAGAAAAT
GAAGTCTTTGGCACCATCGTACTCCTTTGTGCACTTTCCTGACATACACC
GTCGTCTGAAAAAAGTTGCTTCGTGGGCACCAACCAACGTGTACAAAATA
GTTTTGCCGTCTTCGAAAAGGATACCGTCAGGAGAATCTTCATCGTACCA
TACATTCtgtaaaaaatgattgaatttttttctttcacaacCTTACAATC
ATTACAGTTATTTCGAACTCGTAAGGAAAGATGAAATTTGCTCGAactac
agagagattcgaagtgtggaaaatattaaaaaggTGTCTCCTTGAAAAAG
AACTAATAATAAGTTCGAGAAAGATCGGAATAGAAGTCCGAATCAGCGAG
AGTCCTCAGAATTcttagccaaaatttactgtttcttgtaaaaaaacatt
tattcaTTTAATTACCATAGTATGTActcttttccaaaatttgaatagaa
aaaaaacattttatatgaAATAATTACCCCGCATTCACACTCGCCGTCCT
TGTTAGGTTTTAATTCAAAGGGTCCAGGTTCAGGATGAAGCATCAGAAAT
GATCTTAATCTTGTTTTTTTGTTCATAGCGTCACTTGATGAATCACTGGA
AACAATCTTCTTACTTTTTGAGCCTTTGTGGAATTTCCATAGTCCCGTTT
CTTCGTCAAATAC Run BLAST on NCBI transcript from alignment at sc0001587:17409..20205- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037178 ID=TCONS_00037178|Name=TCONS_00037178|organism=Clytia hemisphaerica|type=transcript|length=2797bp|location=Sequence derived from alignment at sc0001587:17409..20205- (Clytia hemisphaerica)
CTCAAATTTGTCAGATTGGTATTGGTACTAAATTAGGGGGTGGGTCCCAT
GATATTTTGTCAAATTCAAAAAGTCATGTTGGTATCGATACCAAATTAAG
GGGTTGGTCCCCCTTTTTTCTGATAATTAAGATTTTCAAGTTGGTATCGA
TACCAAAATAAGGGGGTGGGTCCCCCCTTTTTCTGAAAATCATGATTTTC
AAGTTGGTATCGATACCAATTTTGGGGTGGTGGTGTTAACTTAGCTCAAA
AGGTCAAAAGTCAGGTTTTCGGGCTATGGGCTGGTATTATAAACGTTGAC
CCCCCCCCCTGAAGATACACCATATTAGCGTTCGAATTGGTATACTACAC
ATCAGCGATTAGGAAACCTTTCCAATTTAGGTAAGTGCGGATTTTTTCAT
GAAATTTCTTTGGAGCAGCTTGTCATTGATTATGAGTTTGAACTAGGCTT
CATTTTGATTGAAAAATAAACTTGAAAATTATTACAATATTAAATCAATC
ACTAAGTATATATACGAACTAAAAAAGATAAAAGGTTAGAAAAGATCAAC
GTAAACTGGCAATTGCAATTGCTGCCTTTTTTCTAAATGAAAGTTCTCTA
GCTACGTTCCATTGGTTGATAAAAAATTGAACGTAGAATGTAAAGTGTTC
TTGAGTCATCAATTTGGCAGACGTTTTGATACATTGAAGAAAACTATTGA
ACTGCTCACATATCGATGTGTTGACACCAGCGTATCCTTGTAGCCTGTTT
GATCGGAATGTCTTTGAACACTTATGGGTATACCCATGGAAAATGTCATG
AAAAAATCTGGTTAGTTCGAAGAAGCCACTCTCTCGATTACGACAATACT
CCTCCAAGGAGCATGCAAAATCGTAAAATACTGATAGCGGTGCCTCTTTT
AGAAACATATAGAGGGATTGAGCTGCATCTTTTCTTCCTTCGGCCTTTGG
GATAATATGAAATCCATAGCAGTGCCCATGACAGGGGCAGAACCAAAGGA
AGAGATAGGTGCAGCCTTTTTTTGATACTGTCGGGAAGGCTTTACTGCAA
ACAGTATCGTCTGTTTTCTTGTCATCTTTGTCAGCCGTGAAGTTCCTGGG
TTCCCGCAATTGATGTCCTTCTTTCGTGAAATAGTATGCACGGCCATCTC
TTGGGGGGTTGTACTTTTTGAAATTGTTGGGTTTTTCTTCTTCGACGTTT
TCTCCTTGTAATTTTTTCCTCTTGTCGATGATCGATTTTAAAAGTAATTT
CGTATATTTTTCAGGTACTGTCCCTTTTGCACTCCTGATGGATGACTCTA
CCCATTCTCCGAGTTCTGGGAAAAAAGACATCGAAGCTCTAAAAAATTCG
GCTTTGAAGCGCCACAACTGGGACGTTTCATCAACTACCTCATCGACTTC
GAATAGCACTAACAACTTCTCCACCAAAGGCACATGCTTCCAAGGTAAGA
AGTTAACAATGCTTGCTTTAGGTGCTGTCAAGGTAGNAAAGGCACATGCT
TCCAAGGTAAGAAGTTAACAATGCTTGCTTTAGGTGCTGTCAAGGTAGCA
AGAAGTTTAGCCAAGTCGATCACTTCTGCTCCTTTTCCTCCAAGAACCAT
GTATTGTACGGCTAACAGAAGTGCTTCATCTGAACCATTGAGCTCAGCAA
CGGCTGTCAACAGTTGCGTATCTGTAAGAGACTCCCTATCAAGTTTGTGA
AGAGCCAATTTCCTAACATTGTTGTTTATCAATGTCCTTTTGTCTCCATA
TGTTTCTTTGTCAATAAAAACTCGATCCAAGCCTTTGTTTGGGGTAACAA
TCGCAGCCTCTTTATTTTTTGTTTCAATAGGAATGACGGTCGATTGCTTG
AGAGTTATTCCTATTTTGGTGCCATCACATGCCAGCATATGGATGTTATC
GCCACAACCAAAGCAAGGCTTACGGAAGTCGATCCCCATCGCAGAAGCCC
AAGCAAACCACCACTTGATGAAAGTATTCTTAGTCATGAATGGCTTCTCC
GACAGGAATCGACCATAATTTGCATTCATGACCTTGACGAAACCGGTGAA
AGTTTGCTTGCTCGTCATCACCAAATCGACAAAATTCCATCCGACTTCAT
AGCTACAGCTCACGGCATTCGTGGAACAGAAAATGAAGTCTTTGGCACCA
TCGTACTCCTTTGTGCACTTTCCTGACATACACCGTCGTCTGAAAAAAGT
TGCTTCGTGGGCACCAACCAACGTGTACAAAATAGTTTTGCCGTCTTCGA
AAAGGATACCGTCAGGAGAATCTTCATCGTACCATACATTCTGTAAAAAA
TGATTGAATTTTTTTCTTTCACAACCTTACAATCATTACAGTTATTTCGA
ACTCGTAAGGAAAGATGAAATTTGCTCGAACTACAGAGAGATTCGAAGTG
TGGAAAATATTAAAAAGGTGTCTCCTTGAAAAAGAACTAATAATAAGTTC
GAGAAAGATCGGAATAGAAGTCCGAATCAGCGAGAGTCCTCAGAATTCTT
AGCCAAAATTTACTGTTTCTTGTAAAAAAACATTTATTCATTTAATTACC
ATAGTATGTACTCTTTTCCAAAATTTGAATAGAAAAAAAACATTTTATAT
GAAATAATTACCCCGCATTCACACTCGCCGTCCTTGTTAGGTTTTAATTC
AAAGGGTCCAGGTTCAGGATGAAGCATCAGAAATGATCTTAATCTTGTTT
TTTTGTTCATAGCGTCACTTGATGAATCACTGGAAACAATCTTCTTACTT
TTTGAGCCTTTGTGGAATTTCCATAGTCCCGTTTCTTCGTCAAATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037178-exon-sc0001587-1575043694:19826..20205 | TCONS_00037178-exon-sc0001587-1575043694:19826..20205 | Clytia hemisphaerica | exon |
| TCONS_00037178-exon-sc0001587-1575043694:17409..18941 | TCONS_00037178-exon-sc0001587-1575043694:17409..18941 | Clytia hemisphaerica | exon |
| TCONS_00037178-exon-sc0001587-1510915933:19826..20205 | TCONS_00037178-exon-sc0001587-1510915933:19826..20205 | Clytia hemisphaerica | exon |
| TCONS_00037178-exon-sc0001587-1510915933:17409..18941 | TCONS_00037178-exon-sc0001587-1510915933:17409..18941 | Clytia hemisphaerica | exon |
| TCONS_00037178-exon-sc0001587-1491911889:19826..20205 | TCONS_00037178-exon-sc0001587-1491911889:19826..20205 | Clytia hemisphaerica | exon |
| TCONS_00037178-exon-sc0001587-1491911889:17409..18941 | TCONS_00037178-exon-sc0001587-1491911889:17409..18941 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001587 | supercontig | sc0001587:17409..20205 - |
Blast
The following BLAST results are available for this feature:
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