TCONS_00037177 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037177
Unique NameTCONS_00037177
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1589

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037177 ID=TCONS_00037177|Name=TCONS_00037177|organism=Clytia hemisphaerica|type=transcript|length=1589bp
ctcaaatttgtcagattggtattggtactaaattagggggtgggtcccat
gatattttgtcaaattcaaaaagtcatgttggtatcgataccaaattaag
gggttggtcccccttttttctgataattaagattttcaagttggtatcga
taccaaaataagggggtgggtcccccctttttctgaaaatcatgattttc
aagttggtatcgataccaattttggggtggtggtgttaacttagctcaaa
aggtcaaaagtcaggttttcgGGCTATGGGCTGGTATTATAAacgttgac
ccccccccctgaagaTACACCATATTAGCGTTCGAATTGGTATACTACAC
ATCAGCGATTAGGAAACCTTTCCAATTTAGGTACTGTCCCTTTTGCACTC
CTGATGGATGACTCTACCCATTCTCCGAGTTCTGGGAAAAAAGACATCGA
AGCTCTAAAAAATTCGGCTTTGAAGCGCCACAACTGGGACGTTTCATCAA
CTACCTCATCGACTTCGAATAGCACTAACAACTTCTCCACCAAAGGCACA
TGCTTCCAAGGTAAGAAGTTAACAATGCTTGCTTTAGGTGCTGTCAAGGT
AGNAAAGGCACATGCTTCCAAGGAATGACGGTCGATTGCTTGAGAGTTAT
TCCTATTTTGGTGCCATCACATGCCAGCATATGGATGTTATCGCCACAAC
CAAAGCAAGGCTTACGGAAGTCGATCCCCATCGCAGAAGCCCAAGCAAAC
CACCACTTGATGAAAGTATTCTTAGTCATGAATGGCTTCTCCGACAGGAA
TCGACCATAATTTGCATTCATGACCTTGACGAAACCGGTGAAAGTTTGCT
TGCTCGTCATCACCAAATCGACAAAATTCCATCCGACTTCATAGCTACAG
CTCACGGCATTCGTGGAACAGAAAATGAAGTCTTTGGCACCATCGTACTC
CTTTGTGCACTTTCCTGACATACACCGTCGTCTGAAAAAAGTTGCTTCGT
GGGCACCAACCAACGTGTACAAAATAGTTTTGCCGTCTTCGAAAAGGATA
CCGTCAGGAGAATCTTCATCGTACCATACATTCtgtaaaaaatgattgaa
tttttttctttcacaacCTTACAATCATTACAGTTATTTCGAACTCGTAA
GGAAAGATGAAATTTGCTCGAactacagagagattcgaagtgtggaaaat
attaaaaaggTGTCTCCTTGAAAAAGAACTAATAATAAGTTCGAGAAAGA
TCGGAATAGAAGTCCGAATCAGCGAGAGTCCTCAGAATTcttagccaaaa
tttactgtttcttgtaaaaaaacatttattcaTTTAATTACCATAGTATG
TActcttttccaaaatttgaatagaaaaaaaacattttatatgaAATAAT
TACCCCGCATTCACACTCGCCGTCCTTGTTAGGTTTTAATTCAAAGGGTC
CAGGTTCAGGATGAAGCATCAGAAATGATCTTAATCTTGTTTTTTTGTTC
ATAGCGTCACTTGATGAATCACTGGAAACAATCTTCTTACTTTTTGAGCC
TTTGTGGAATTTCCATAGTCCCGTTTCTTCGTCAAATAC
Run BLAST on NCBI

transcript from alignment at sc0001587:17409..20205-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037177 ID=TCONS_00037177|Name=TCONS_00037177|organism=Clytia hemisphaerica|type=transcript|length=2797bp|location=Sequence derived from alignment at sc0001587:17409..20205- (Clytia hemisphaerica)
CTCAAATTTGTCAGATTGGTATTGGTACTAAATTAGGGGGTGGGTCCCAT
GATATTTTGTCAAATTCAAAAAGTCATGTTGGTATCGATACCAAATTAAG
GGGTTGGTCCCCCTTTTTTCTGATAATTAAGATTTTCAAGTTGGTATCGA
TACCAAAATAAGGGGGTGGGTCCCCCCTTTTTCTGAAAATCATGATTTTC
AAGTTGGTATCGATACCAATTTTGGGGTGGTGGTGTTAACTTAGCTCAAA
AGGTCAAAAGTCAGGTTTTCGGGCTATGGGCTGGTATTATAAACGTTGAC
CCCCCCCCCTGAAGATACACCATATTAGCGTTCGAATTGGTATACTACAC
ATCAGCGATTAGGAAACCTTTCCAATTTAGGTAAGTGCGGATTTTTTCAT
GAAATTTCTTTGGAGCAGCTTGTCATTGATTATGAGTTTGAACTAGGCTT
CATTTTGATTGAAAAATAAACTTGAAAATTATTACAATATTAAATCAATC
ACTAAGTATATATACGAACTAAAAAAGATAAAAGGTTAGAAAAGATCAAC
GTAAACTGGCAATTGCAATTGCTGCCTTTTTTCTAAATGAAAGTTCTCTA
GCTACGTTCCATTGGTTGATAAAAAATTGAACGTAGAATGTAAAGTGTTC
TTGAGTCATCAATTTGGCAGACGTTTTGATACATTGAAGAAAACTATTGA
ACTGCTCACATATCGATGTGTTGACACCAGCGTATCCTTGTAGCCTGTTT
GATCGGAATGTCTTTGAACACTTATGGGTATACCCATGGAAAATGTCATG
AAAAAATCTGGTTAGTTCGAAGAAGCCACTCTCTCGATTACGACAATACT
CCTCCAAGGAGCATGCAAAATCGTAAAATACTGATAGCGGTGCCTCTTTT
AGAAACATATAGAGGGATTGAGCTGCATCTTTTCTTCCTTCGGCCTTTGG
GATAATATGAAATCCATAGCAGTGCCCATGACAGGGGCAGAACCAAAGGA
AGAGATAGGTGCAGCCTTTTTTTGATACTGTCGGGAAGGCTTTACTGCAA
ACAGTATCGTCTGTTTTCTTGTCATCTTTGTCAGCCGTGAAGTTCCTGGG
TTCCCGCAATTGATGTCCTTCTTTCGTGAAATAGTATGCACGGCCATCTC
TTGGGGGGTTGTACTTTTTGAAATTGTTGGGTTTTTCTTCTTCGACGTTT
TCTCCTTGTAATTTTTTCCTCTTGTCGATGATCGATTTTAAAAGTAATTT
CGTATATTTTTCAGGTACTGTCCCTTTTGCACTCCTGATGGATGACTCTA
CCCATTCTCCGAGTTCTGGGAAAAAAGACATCGAAGCTCTAAAAAATTCG
GCTTTGAAGCGCCACAACTGGGACGTTTCATCAACTACCTCATCGACTTC
GAATAGCACTAACAACTTCTCCACCAAAGGCACATGCTTCCAAGGTAAGA
AGTTAACAATGCTTGCTTTAGGTGCTGTCAAGGTAGNAAAGGCACATGCT
TCCAAGGTAAGAAGTTAACAATGCTTGCTTTAGGTGCTGTCAAGGTAGCA
AGAAGTTTAGCCAAGTCGATCACTTCTGCTCCTTTTCCTCCAAGAACCAT
GTATTGTACGGCTAACAGAAGTGCTTCATCTGAACCATTGAGCTCAGCAA
CGGCTGTCAACAGTTGCGTATCTGTAAGAGACTCCCTATCAAGTTTGTGA
AGAGCCAATTTCCTAACATTGTTGTTTATCAATGTCCTTTTGTCTCCATA
TGTTTCTTTGTCAATAAAAACTCGATCCAAGCCTTTGTTTGGGGTAACAA
TCGCAGCCTCTTTATTTTTTGTTTCAATAGGAATGACGGTCGATTGCTTG
AGAGTTATTCCTATTTTGGTGCCATCACATGCCAGCATATGGATGTTATC
GCCACAACCAAAGCAAGGCTTACGGAAGTCGATCCCCATCGCAGAAGCCC
AAGCAAACCACCACTTGATGAAAGTATTCTTAGTCATGAATGGCTTCTCC
GACAGGAATCGACCATAATTTGCATTCATGACCTTGACGAAACCGGTGAA
AGTTTGCTTGCTCGTCATCACCAAATCGACAAAATTCCATCCGACTTCAT
AGCTACAGCTCACGGCATTCGTGGAACAGAAAATGAAGTCTTTGGCACCA
TCGTACTCCTTTGTGCACTTTCCTGACATACACCGTCGTCTGAAAAAAGT
TGCTTCGTGGGCACCAACCAACGTGTACAAAATAGTTTTGCCGTCTTCGA
AAAGGATACCGTCAGGAGAATCTTCATCGTACCATACATTCTGTAAAAAA
TGATTGAATTTTTTTCTTTCACAACCTTACAATCATTACAGTTATTTCGA
ACTCGTAAGGAAAGATGAAATTTGCTCGAACTACAGAGAGATTCGAAGTG
TGGAAAATATTAAAAAGGTGTCTCCTTGAAAAAGAACTAATAATAAGTTC
GAGAAAGATCGGAATAGAAGTCCGAATCAGCGAGAGTCCTCAGAATTCTT
AGCCAAAATTTACTGTTTCTTGTAAAAAAACATTTATTCATTTAATTACC
ATAGTATGTACTCTTTTCCAAAATTTGAATAGAAAAAAAACATTTTATAT
GAAATAATTACCCCGCATTCACACTCGCCGTCCTTGTTAGGTTTTAATTC
AAAGGGTCCAGGTTCAGGATGAAGCATCAGAAATGATCTTAATCTTGTTT
TTTTGTTCATAGCGTCACTTGATGAATCACTGGAAACAATCTTCTTACTT
TTTGAGCCTTTGTGGAATTTCCATAGTCCCGTTTCTTCGTCAAATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021994XLOC_021994Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037177-exon-sc0001587-1575043694:19826..20205TCONS_00037177-exon-sc0001587-1575043694:19826..20205Clytia hemisphaericaexon
TCONS_00037177-exon-sc0001587-1575043694:18700..18941TCONS_00037177-exon-sc0001587-1575043694:18700..18941Clytia hemisphaericaexon
TCONS_00037177-exon-sc0001587-1575043694:17409..18375TCONS_00037177-exon-sc0001587-1575043694:17409..18375Clytia hemisphaericaexon
TCONS_00037177-exon-sc0001587-1510915933:19826..20205TCONS_00037177-exon-sc0001587-1510915933:19826..20205Clytia hemisphaericaexon
TCONS_00037177-exon-sc0001587-1510915933:18700..18941TCONS_00037177-exon-sc0001587-1510915933:18700..18941Clytia hemisphaericaexon
TCONS_00037177-exon-sc0001587-1510915933:17409..18375TCONS_00037177-exon-sc0001587-1510915933:17409..18375Clytia hemisphaericaexon
TCONS_00037177-exon-sc0001587-1491911889:19826..20205TCONS_00037177-exon-sc0001587-1491911889:19826..20205Clytia hemisphaericaexon
TCONS_00037177-exon-sc0001587-1491911889:18700..18941TCONS_00037177-exon-sc0001587-1491911889:18700..18941Clytia hemisphaericaexon
TCONS_00037177-exon-sc0001587-1491911889:17409..18375TCONS_00037177-exon-sc0001587-1491911889:17409..18375Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001587supercontigsc0001587:17409..20205 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.120757	0	0.0133965	0	0	0	0	0	0	0	0.00239508	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037177 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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