|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037176 ID=TCONS_00037176|Name=TCONS_00037176|organism=Clytia hemisphaerica|type=transcript|length=1864bp
AACGTAAACTGGCAATTGCAATTGCTGCCTTTTTTCTAAATGAAAGTTCT
CTAGCTACGTTCCATTGGTTGATAAAAAATTGAACGTAGAATGTAAAGTG
TTCTTGAGTCATCAATTTGGCAGACGTTTTGATACATTGAAGAAAACTAT
TGAACTGCTCACATATCGATGTGTTGACACCAGCGTATCCTTGTAGCCTG
TTTGATCGGAATGTCTTTGAACACTTATGGGTATACCCATGGAAAATGTC
ATGAAAAAATCTGGTTAGTTCGAAGAAGCCACTCTCTCGATTACGACAAT
ACTCCTCCAAGGAGCATGCAAAATCGTAAAATACTGATAGCGGTGCCTCT
TTTAGAAACATATAGAGGGATTGAGCTGCATCTTTTCTTCCTTCGGCCTT
TGGGATAATATGAAATCCATAGCAGTGCCCATGACAGGGGCAGAACCAAA
GGAAGAGATAGGTGCAGCCTTTTTTTGATACTGTCGGGAAGGCTTTACTG
CAAACAGTATCGTCTGTTTTCTTGTCATCTTTGTCAGCCGTGAAGTTCCT
GGGTTCCCGCAATTGATGTCCTTCTTTCGTGAAATAGTATGCACGGCCAT
CTCttggggggttgtactttttgaaattgttgGGTTTTTCTTCTTCGACG
TTTTCTCCTTGTAATTTTTTCCTCTTGTCGATGATcgattttaaaagtaa
tttcgtATATTTTTCAGGTACTGTCCCTTTTGCACTCCTGATGGATGACT
CTACCCATTCTCCGAGTTCTGGGAAAAAAGACATCGAAGCTCTAAAAAAT
TCGGCTTTGAAGCGCCACAACTGGGACGTTTCATCAACTACCTCATCGAC
TTCGAATAGCACTAACAACTTCTCCACCAAAGGCACATGCTTCCAAGGAA
TGACGGTCGATTGCTTGAGAGTTATTCCTATTTTGGTGCCATCACATGCC
AGCATATGGATGTTATCGCCACAACCAAAGCAAGGCTTACGGAAGTCGAT
CCCCATCGCAGAAGCCCAAGCAAACCACCACTTGATGAAAGTATTCTTAG
TCATGAATGGCTTCTCCGACAGGAATCGACCATAATTTGCATTCATGACC
TTGACGAAACCGGTGAAAGTTTGCTTGCTCGTCATCACCAAATCGACAAA
ATTCCATCCGACTTCATAGCTACAGCTCACGGCATTCGTGGAACAGAAAA
TGAAGTCTTTGGCACCATCGTACTCCTTTGTGCACTTTCCTGACATACAC
CGTCGTCTGAAAAAAGTTGCTTCGTGGGCACCAACCAACGTGTACAAAAT
AGTTTTGCCGTCTTCGAAAAGGATACCGTCAGGAGAATCTTCATCGTACC
ATACATTCtgtaaaaaatgattgaatttttttctttcacaacCTTACAAT
CATTACAGTTATTTCGAACTCGTAAGGAAAGATGAAATTTGCTCGAacta
cagagagattcgaagtgtggaaaatattaaaaaggTGTCTCCTTGAAAAA
GAACTAATAATAAGTTCGAGAAAGATCGGAATAGAAGTCCGAATCAGCGA
GAGTCCTCAGAATTcttagccaaaatttactgtttcttgtaaaaaaacat
ttattcaTTTAATTACCATAGTATGTActcttttccaaaatttgaataga
aaaaaaacattttatatgaAATAATTACCCCGCATTCACACTCGCCGTCC
TTGTTAGGTTTTAATTCAAAGGGTCCAGGTTCAGGATGAAGCATCAGAAA
TGATCTTAATCTTGTTTTTTTGTTCATAGCGTCACTTGATGAATCACTGG
AAACAATCTTCTTACTTTTTGAGCCTTTGTGGAATTTCCATAGTCCCGTT
TCTTCGTCAAATAC Run BLAST on NCBI transcript from alignment at sc0001587:17409..19658- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037176 ID=TCONS_00037176|Name=TCONS_00037176|organism=Clytia hemisphaerica|type=transcript|length=2250bp|location=Sequence derived from alignment at sc0001587:17409..19658- (Clytia hemisphaerica)
AACGTAAACTGGCAATTGCAATTGCTGCCTTTTTTCTAAATGAAAGTTCT
CTAGCTACGTTCCATTGGTTGATAAAAAATTGAACGTAGAATGTAAAGTG
TTCTTGAGTCATCAATTTGGCAGACGTTTTGATACATTGAAGAAAACTAT
TGAACTGCTCACATATCGATGTGTTGACACCAGCGTATCCTTGTAGCCTG
TTTGATCGGAATGTCTTTGAACACTTATGGGTATACCCATGGAAAATGTC
ATGAAAAAATCTGGTTAGTTCGAAGAAGCCACTCTCTCGATTACGACAAT
ACTCCTCCAAGGAGCATGCAAAATCGTAAAATACTGATAGCGGTGCCTCT
TTTAGAAACATATAGAGGGATTGAGCTGCATCTTTTCTTCCTTCGGCCTT
TGGGATAATATGAAATCCATAGCAGTGCCCATGACAGGGGCAGAACCAAA
GGAAGAGATAGGTGCAGCCTTTTTTTGATACTGTCGGGAAGGCTTTACTG
CAAACAGTATCGTCTGTTTTCTTGTCATCTTTGTCAGCCGTGAAGTTCCT
GGGTTCCCGCAATTGATGTCCTTCTTTCGTGAAATAGTATGCACGGCCAT
CTCTTGGGGGGTTGTACTTTTTGAAATTGTTGGGTTTTTCTTCTTCGACG
TTTTCTCCTTGTAATTTTTTCCTCTTGTCGATGATCGATTTTAAAAGTAA
TTTCGTATATTTTTCAGGTACTGTCCCTTTTGCACTCCTGATGGATGACT
CTACCCATTCTCCGAGTTCTGGGAAAAAAGACATCGAAGCTCTAAAAAAT
TCGGCTTTGAAGCGCCACAACTGGGACGTTTCATCAACTACCTCATCGAC
TTCGAATAGCACTAACAACTTCTCCACCAAAGGCACATGCTTCCAAGGTA
AGAAGTTAACAATGCTTGCTTTAGGTGCTGTCAAGGTAGNAAAGGCACAT
GCTTCCAAGGTAAGAAGTTAACAATGCTTGCTTTAGGTGCTGTCAAGGTA
GCAAGAAGTTTAGCCAAGTCGATCACTTCTGCTCCTTTTCCTCCAAGAAC
CATGTATTGTACGGCTAACAGAAGTGCTTCATCTGAACCATTGAGCTCAG
CAACGGCTGTCAACAGTTGCGTATCTGTAAGAGACTCCCTATCAAGTTTG
TGAAGAGCCAATTTCCTAACATTGTTGTTTATCAATGTCCTTTTGTCTCC
ATATGTTTCTTTGTCAATAAAAACTCGATCCAAGCCTTTGTTTGGGGTAA
CAATCGCAGCCTCTTTATTTTTTGTTTCAATAGGAATGACGGTCGATTGC
TTGAGAGTTATTCCTATTTTGGTGCCATCACATGCCAGCATATGGATGTT
ATCGCCACAACCAAAGCAAGGCTTACGGAAGTCGATCCCCATCGCAGAAG
CCCAAGCAAACCACCACTTGATGAAAGTATTCTTAGTCATGAATGGCTTC
TCCGACAGGAATCGACCATAATTTGCATTCATGACCTTGACGAAACCGGT
GAAAGTTTGCTTGCTCGTCATCACCAAATCGACAAAATTCCATCCGACTT
CATAGCTACAGCTCACGGCATTCGTGGAACAGAAAATGAAGTCTTTGGCA
CCATCGTACTCCTTTGTGCACTTTCCTGACATACACCGTCGTCTGAAAAA
AGTTGCTTCGTGGGCACCAACCAACGTGTACAAAATAGTTTTGCCGTCTT
CGAAAAGGATACCGTCAGGAGAATCTTCATCGTACCATACATTCTGTAAA
AAATGATTGAATTTTTTTCTTTCACAACCTTACAATCATTACAGTTATTT
CGAACTCGTAAGGAAAGATGAAATTTGCTCGAACTACAGAGAGATTCGAA
GTGTGGAAAATATTAAAAAGGTGTCTCCTTGAAAAAGAACTAATAATAAG
TTCGAGAAAGATCGGAATAGAAGTCCGAATCAGCGAGAGTCCTCAGAATT
CTTAGCCAAAATTTACTGTTTCTTGTAAAAAAACATTTATTCATTTAATT
ACCATAGTATGTACTCTTTTCCAAAATTTGAATAGAAAAAAAACATTTTA
TATGAAATAATTACCCCGCATTCACACTCGCCGTCCTTGTTAGGTTTTAA
TTCAAAGGGTCCAGGTTCAGGATGAAGCATCAGAAATGATCTTAATCTTG
TTTTTTTGTTCATAGCGTCACTTGATGAATCACTGGAAACAATCTTCTTA
CTTTTTGAGCCTTTGTGGAATTTCCATAGTCCCGTTTCTTCGTCAAATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037176-exon-sc0001587-1575043694:18762..19658 | TCONS_00037176-exon-sc0001587-1575043694:18762..19658 | Clytia hemisphaerica | exon |
| TCONS_00037176-exon-sc0001587-1575043694:17409..18375 | TCONS_00037176-exon-sc0001587-1575043694:17409..18375 | Clytia hemisphaerica | exon |
| TCONS_00037176-exon-sc0001587-1510915933:18762..19658 | TCONS_00037176-exon-sc0001587-1510915933:18762..19658 | Clytia hemisphaerica | exon |
| TCONS_00037176-exon-sc0001587-1510915933:17409..18375 | TCONS_00037176-exon-sc0001587-1510915933:17409..18375 | Clytia hemisphaerica | exon |
| TCONS_00037176-exon-sc0001587-1491911889:18762..19658 | TCONS_00037176-exon-sc0001587-1491911889:18762..19658 | Clytia hemisphaerica | exon |
| TCONS_00037176-exon-sc0001587-1491911889:17409..18375 | TCONS_00037176-exon-sc0001587-1491911889:17409..18375 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001587 | supercontig | sc0001587:17409..19658 - |
Blast
The following BLAST results are available for this feature:
|
