TCONS_00037170 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037170
Unique NameTCONS_00037170
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1420

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037170 ID=TCONS_00037170|Name=TCONS_00037170|organism=Clytia hemisphaerica|type=transcript|length=1420bp
tttcgaccccttgcatttgccaccaatcgcaagtgaaaaataccccgttc
atttgccaggatgtgcctgactgccaACCCCCTGTCCCTGTGCCGGCCCT
GCCTGTGCTGTACATACTGTGTGTTGCTGTTTTTATTATACTGGATATTA
TAGGAAACAAAAATTAGTGTAAATGGATATAGATGAACAACCCTCAGAAA
TCGACACTGCTACAAATACAAATACACCTACACCTAATGATGATTTTTGG
GAAGGAATTGACACTTTAACAAATACTGTTTATCAGAATTTGAAGGTATG
CATTGAAGGTGCAGATTTAGTATACCAGTTTGATACGGAACTGGAAAAAT
GCTACAAGGATGCGCCTGTGAAAGGCTTTTCGAGCGTTTTCAACCTTGAG
CATAGCCTCCTCCAACTTGCTGCCTCAAATGAAGTATatggtttgttttc
atttgTGGTAGTTAAGTCCAGAGAGACTCACAAATGTATGGCAAGATATG
TGGAATACGGTTGCTTTGATGGTATGTTTAGAACGAACTTGGAGACGATA
CAGCAGCAAATTAATGAAGACCAAATTTTGTACGTAAAAGCTTTTAACAA
CTACGATGTTGCTGATACACAAACACGGGAATCGTTGATTTCAAAGAAGG
AGAGGAAGAAGAAGTCAAGTTCTTCGAAAGGATCTGGAAGTAGTAATACG
AAGCCACGTTCTATATATAAACTTCGGTTAATCAACAACAAGGGTAGCGT
TACAAACTCCGTCAAATGCCTGTCCTCCGAACTCGACCAACAATTTGAAT
GTCTCGGATTGGTAGTTTATGTCGAAAGAAAGGATTCGAAGATTTCAAAT
CGAGATGATAGACTGAACAGACGACTGAACATGAGACTACTGAACATGAG
GTGACCAAAAAACTTTGACTGTGCGCCATAATTTGAATTTGAAGCGTATC
CCAATCTTAGTGGCATTAATTCTCACAGTTAAAAAGGGTCCACACAATTG
CCTTTGAGAGGACTGTACTTTTAGGTGGGACCAATCATTCAAGATATCAG
TTGGGGTTTTTAGATTTTGTGGGACTTGGAACCTCCTTGTAAACTGTAAT
ATTTTAGGTTGTCAAAGTTTTTCGGTCGCTCATGTTATACTTACAGACTG
ACATCGACGGACATAACCCATGACATAAAGACGATAATTTTGAATTGGTA
AGTCGATGGATCATttggaaattgattttttgacgtaaaatgtttttttc
tctatttgCTTTGCCGATTGGAATTTCTCAATCCTAGTTCTTTTGGGATA
CATGCTGAACCATCTGCACTGTATGTTTAGtttaagaaatatgaaataaa
tataGTATAACGAATGATATTGTTTCCATTCATTTATGTTTGTCTTCCCG
TCTTCACTGTTCCCAAAAAA
Run BLAST on NCBI

transcript from alignment at sc0001587:8704..14089+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037170 ID=TCONS_00037170|Name=TCONS_00037170|organism=Clytia hemisphaerica|type=transcript|length=5386bp|location=Sequence derived from alignment at sc0001587:8704..14089+ (Clytia hemisphaerica)
tttcgaccccttgcatttgccaccaatcgcaagtgaaaaataccccgttc
atttgccaggatgtgcctgactgccaACCCCCTGTCCCTGTGCCGGCCCT
GCCTGTGCTGTACATACTGTGTGTTGCTGTTTTTATTATACTGGATATTA
TAGGTAGGTGTGTGTGTCGATGTACAATACACAGCTTTTGTACATCTGCT
TGTTCTACATACTTCACTGATGATATGCATTCTATAAAATCAATCCTGTT
GAGCGACCAGGCgggtgtcaaccgaaccctatcgaaccgattttcgtaat
cgaaccatcaaactttatcgaacaaaatcgaacgataactgttcgattac
cgaacccgatcgaacagctatctaactttacgaaaatttcgtgataagtt
cgatttagttcgatgagtgttctttgttcgatggagttcgattgatgttc
gatggagttcgattgatgttcgatggAGTTTGATTGATGTGGTTTGATGA
AAGTTCATTGTGGTTCAATGATTGTGTCagattgattctacttttcttta
cctttcagaaacGAGGTTCGttaatcaaaacacaggcaccgtatgcttca
ctcattattgctcatttgaaataatagagatgacactttcttaaagaaag
taataaaaattaaaatccttttttttacaaattaacgaCCAAAGAGCTAG
TAAAAGCTCCAGCTTAGCTTGTCCCATCCGATGGGATAGATTATAGGATG
GCCCGCGAGAACGgcccgtgggcggccgccaatacgtcctcggaatataa
ataaaaaattgggtggcaaggtataaatcgatttaatcgaatcaatcgaa
cttcatcgacgATCttaatcaaacttcaccgaACCTCAATCGTAATCATC
GAACTGTGATCGAACTATAATCGTATAATCGAACAGTCATCGAACTTTAC
GAAAATTTTCCCGGTTCGATAGGTGTTCGAttgggttcggtaatcgaaca
gctatcgttcgatagggttcgattaagttcgattagttcgataatcgaac
agttcgattgacaccgcctgggAGTGAGGGATCGGATATTGAAATGATCC
CCCGGAAAAGCGCCAGTAATGTTTTTAGTGCGGGAAATCGGAATCTTATT
AGTTGGTCCAAAGgtatgaccgctatatggataataatcaGGATTTTAAG
GAAGGCTCTATTATTTATATAGATCCATTGATTATTCATTGGTTTGCTTA
ATATTGATTATCAATTGATGATTGATTGATGGATATTTATCAGTTATTGT
AGAACCAATTAACAATCGAGGAAATAGACCAAATGATGCCGCAGCCATTT
TGACTGATTGAAAGGAAGGCAAAATACCTTAAtttattacacttatataa
ctaccagtcgggtgtttaagataaaaactgcaattattgctcttttcaga
aattattgccgaaaacggcagaaatgaatcagcagaaaaataaaaaagta
aataaatgaaaattgccgttttcggtaATTATTGCCGTTCAataataaaa
gttgattttattattgaacacgtggtatttgacaccctcacgataagtag
gcccactgtgcctcgtttagttttgttttgtaacaactgaaaatttgaaa
aacagttAGTCCAAAGTCGAATAAGTGTATAATTTACattctttcagaaa
aattttggtaaatttctgcaaaaaaataaaaaattttcaaagaaaaattg
aatttttttggaaaaagatctgaaattttttccacaacttttttgttttg
atttttgtcaaatttatgaaatgaaaattgtGAATGCTTCTGGATGCTTT
GATAGTCATTTAAACCAAGCAAACTTATTCCAAGTATTCGTAAATACAAA
GATATAACAAAAACTACGACTCCTATGTAGAAAAGCCGCAGGTTATTCAT
TTTATAGGGTGGTATATCCCTTTTTGAACACTAAAAACAGTTGCTCCAAA
GTTGAGTAAGTGctggtggtggtgtgacgagaaattttccaaaattgcag
ttactcatCATGGAGTAACTATGTCACCCCCCTGGTTAGCGCTAAGCATG
GTATCAAGTGGGAAAGCCTGGTCAGCAGCAGTTATCTTCTTTGGAAATGT
GTGCACAGTTGTTTGTCAGTTGGAACTGATTATCAGAATGCAGCCCTGCA
AATCTGCATTGGCATACAGCAAATGCTCAGGCAAAAGCTGATGTAAATTG
GATTATAGTGGCTTGCATTGGCAAAAAATGGCgaagcaaaaaagttgaat
cACCAGGGTTGGAACGCAAAACTTTGgacggttgaaaaatgaaattcaga
GAGCTAGTTACAATGATGGCCATAATAATATTTGAGGAAAAAGGGAATTt
ccacaaaattttaaaaccacAAAATGATTTGGAAGTGCTTTAACTTAGGT
TGGAACTCTGGGTTTGAAAAATACACTTAATAAAACTTAGAATCTTAGGA
TTTCAGGATCAAAAAGTCcaaataaggctgagaatacagcctggaagtct
ataaaacccaaaattgaaatatttgattaaatttaaacAATTAGCCCAag
attgacttttttttgacccAGATTGTAGTTGTTCAGGGTTCAaacagacc
ctggaaaacctagAAATTGTTggcttttggaaaattttcacaGAAACTCA
GGGAACTCTTTTTTAAAATGTTCACAATAATTCAGGAAAGCTCAGATTCC
TTATACCGGCAAAACATGAAAATGTTGAATGTGCATTTATTAATAAAGTT
gaataaatgtaaacaaatttacaatttcAGATTTACCTGTGTTTTCAGTG
TTTGTCAGTGagaaaaaatctattttgaagaccagaaaaaaactttgttt
AGGGTCTGGcatacttttaaaaattttgactaTTTACTTTTCTTTCACAG
TTACACTGAGTGACACACAAACGTTTCTTTAGCATGTCCATTGTCTGTTC
GCTTTGTAATAACACCAATGTTGTTTTGGTAAGCTGATTGTTGGATCAGC
AACTTGGTAtacattatttcaaattattataCGAAAGTTACTTGCTCGAA
TCTCTACATCTGCTTGTTATCATGTATAATTTATTTTATAGGAAACAAAA
ATTAGTGTAAATGGATATAGATGAACAACCCTCAGAAATCGACACTGCTA
CAAATACAAATACACCTACACCTAATGATGATTTTTGGGAAGGtatgaaa
aattttgtttatgttttgccatttcttattttcaactcatttatttctga
tttatttcgATTCACACTCAGTCGctctaaaatctcaaaaacatCTACAA
AGATATTTATTGAGGCTCTACGTGATCTCTCATGcattctttttattctt
ttctcaGGAATTGACACTTTAACAAATACTGTTTATCAGAATTTGAAGGT
ATGCATTGAAGGTGCAGATTTAGTATACCAGTTTGATACGGAACTGGAAA
AATGCTACAAGGATGCGCCTGTGAAAGGCTTTTCGAGCGTTTTCAACCTT
GAGCATAGCCTCCTCCAACTTGCTGCCTCAAATGAAGTATatggtttgtt
ttcatttgTGGTAGTTAAGTCCAGAGAGACTCACAAATGTATGGCAAGAT
ATGTGGAATACGGTTGCTTTGATGGTATGTTTAGGTATGTGATAATGTTC
TTAATAATGCTTCaacagttttatttatttttttattatttatatcTCGA
TTACatgatgaaatcaaaataatatGCTTCTTCCTCATTTTTATtgattg
aaataaaatctacaaTACACTGCATTGTCTGAAGATTGCGTCAGTTCATA
TTGACGCCACATTGCAAGTTTAAttagttctttatttttcgattttattt
gCGTTTTAGAACGAACTTGGAGACGATACAGCAGCAAATTAATGAAGACC
AAATTTTGTACGTAAAAGCTTTTAACAACTACGATGTTGCTGATACACAA
ACACGGGAATCGTTGATTTCAAAGAAGGAGAGGAAGAAGAAGTCAAGTTC
TTCGAAAGGtataaaatttgtccaaaaagaTTAACGTTGTATTTTACAGA
GGAGCCCTTACTGGCCCTGGATTACTTTTAAGCCCTGCAGGATTTTAGTT
CggaaattttatttaaatgaaAAGATTTGGTGTCGAAGTGGTTATCTCTC
GTGCCTTCCGTGCAGGAGGTAagggggttcgattcccactcggagCTGTG
ATTCTCTTTTGTCAAGTGGGTCAATCCATGCCATTTGAATTGAATTGGTA
TATTAGAGTATGGGGAGGTATGACAGACACGATAGTAACGTTGCCGATGC
AACATGGCTCTGTTGTGTCGCGAATAGGCCAACGGTGTCTAATAAGGGCC
ATGATTTCCCTATTTCAGAATAGGTAACTTTTCCAGGATAGGACCGTCTG
CGTCGGCGGGACTACTTCTTTTTTCCTCTGTTCTATCCGTACTTTATTTC
ATCTTTAGGATCTGGAAGTAGTAATACGAAGCCACGTTCTATATATAAAC
TTCGGTTAATCAACAACAAGGGTAGCGTTACAAACTCCGTCAAATGCCTG
TCCTCCGAACTCGACCAACAATTTGAATGTCTCGGATTGGTAGTTTATGT
CGAAAGAAAGGATTCGAAGATTTCAAATCGAGATGATAGGTAAATTATTA
ACAAAACTTTGAATTTATTGAATTAGTATAGCTTCATGGTAGAATCTGTA
CGCTTTAAAAGTCTTGGCACTATTTTAGAATCGTATGTTCAACGGAGTGa
ctaattgaatttttttttccacaATAGACTGAACAGACGACTGAACATGA
GACTACTGAACATGAGGTGACCAAAAAACTTTGACTGTGCGCCATAATTT
GAATTTGAAGCGTATCCCAATCTTAGTGGCATTAATTCTCACAGTTAAAA
AGGGTCCACACAATTGCCTTTGAGAGGACTGTACTTTTAGGTGGGACCAA
TCATTCAAGATATCAGTTGGGGTTTTTAGATTTTGTGGGACTTGGAACCT
CCTTGTAAACTGTAATATTTTAGGTTGTCAAAGTTTTTCGGTCGCTCATG
TTATACTTACAGACTGACATCGACGGACATAACCCATGACATAAAGACGA
TAATTTTGAATTGGTAAGTCGATGGATCATttggaaattgattttttgac
gtaaaatgtttttttctctatttgCTTTGCCGATTGGAATTTCTCAATCC
TAGTTCTTTTGGGATACATGCTGAACCATCTGCACTGTATGTTTAGttta
agaaatatgaaataaatataGTATAACGAATGATATTGTTTCCATTCATT
TATGTTTGTCTTCCCGTCTTCACTGTTCCCAAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021993XLOC_021993Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037170-exon-sc0001587-1491911889:8704..8856TCONS_00037170-exon-sc0001587-1491911889:8704..8856Clytia hemisphaericaexon
TCONS_00037170-exon-sc0001587-1510915933:8704..8856TCONS_00037170-exon-sc0001587-1510915933:8704..8856Clytia hemisphaericaexon
TCONS_00037170-exon-sc0001587-1575043694:8704..8856TCONS_00037170-exon-sc0001587-1575043694:8704..8856Clytia hemisphaericaexon
TCONS_00037170-exon-sc0001587-1491911889:11845..11945TCONS_00037170-exon-sc0001587-1491911889:11845..11945Clytia hemisphaericaexon
TCONS_00037170-exon-sc0001587-1510915933:11845..11945TCONS_00037170-exon-sc0001587-1510915933:11845..11945Clytia hemisphaericaexon
TCONS_00037170-exon-sc0001587-1575043694:11845..11945TCONS_00037170-exon-sc0001587-1575043694:11845..11945Clytia hemisphaericaexon
TCONS_00037170-exon-sc0001587-1491911889:12111..12387TCONS_00037170-exon-sc0001587-1491911889:12111..12387Clytia hemisphaericaexon
TCONS_00037170-exon-sc0001587-1510915933:12111..12387TCONS_00037170-exon-sc0001587-1510915933:12111..12387Clytia hemisphaericaexon
TCONS_00037170-exon-sc0001587-1575043694:12111..12387TCONS_00037170-exon-sc0001587-1575043694:12111..12387Clytia hemisphaericaexon
TCONS_00037170-exon-sc0001587-1491911889:12613..12761TCONS_00037170-exon-sc0001587-1491911889:12613..12761Clytia hemisphaericaexon
TCONS_00037170-exon-sc0001587-1510915933:12613..12761TCONS_00037170-exon-sc0001587-1510915933:12613..12761Clytia hemisphaericaexon
TCONS_00037170-exon-sc0001587-1575043694:12613..12761TCONS_00037170-exon-sc0001587-1575043694:12613..12761Clytia hemisphaericaexon
TCONS_00037170-exon-sc0001587-1491911889:13212..13392TCONS_00037170-exon-sc0001587-1491911889:13212..13392Clytia hemisphaericaexon
TCONS_00037170-exon-sc0001587-1510915933:13212..13392TCONS_00037170-exon-sc0001587-1510915933:13212..13392Clytia hemisphaericaexon
TCONS_00037170-exon-sc0001587-1575043694:13212..13392TCONS_00037170-exon-sc0001587-1575043694:13212..13392Clytia hemisphaericaexon
TCONS_00037170-exon-sc0001587-1491911889:13531..14089TCONS_00037170-exon-sc0001587-1491911889:13531..14089Clytia hemisphaericaexon
TCONS_00037170-exon-sc0001587-1510915933:13531..14089TCONS_00037170-exon-sc0001587-1510915933:13531..14089Clytia hemisphaericaexon
TCONS_00037170-exon-sc0001587-1575043694:13531..14089TCONS_00037170-exon-sc0001587-1575043694:13531..14089Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001587supercontigsc0001587:8704..14089 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.71582	2.90166	2.00241	1.20518	7.71666	4.84582	6.77457	8.6026	3.68473	4.59839	3.0094	3.86966	3.11334	3.18044	2.18754	2.77229	3.18179	4.73473	2.63803	2.45961	4.02464	3.32674	2.44544	3.16053	8.0171	11.1268	2.4532	2.01306	1.43753	1.67602
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037170 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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