TCONS_00037161 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037161
Unique NameTCONS_00037161
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length316

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037161 ID=TCONS_00037161|Name=TCONS_00037161|organism=Clytia hemisphaerica|type=transcript|length=316bp
CGCACGGAGTCCCTTTCGTACCTCTTTCAGTTCAGTAAGGATACTTTCAG
TGTCTTTGATTGAAGCATTATGGATTGAGTGTTCATCAATTAAGTCAGTT
ACCTCACCCAAACAAAGTTCAATATCAGATTGTAGTATGTATACTTGATT
GAGTTGAAGTTTGATGTCTCTCATGGCAGACGGTGGTGTCTCGGTCAACG
GTTTGATCCGTCTAGATGGAGTTGATGGGTCCGCTGCCGGTGGTTGTTCC
TTAGGGAGGTCTTTTGTCTCGTCAGGAGTTGCAGACGCTTGAGACGCAGA
ATCAGGAGATTCATCC
Run BLAST on NCBI

protein sequence of TCONS_00037161-protein

>TCONS_00037161-protein ID=TCONS_00037161-protein|Name=TCONS_00037161-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
DESPDSASQASATPDETKDLPKEQPPAADPSTPSRRIKPLTETPPSAMRD
IKLQLNQVYILQSDIELCLGEVTDLIDEHSIHNASIKDTESILTELKEVR
KGLRA
Run BLAST on NCBI

transcript from alignment at sc0001582:36359..36674

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037161 ID=TCONS_00037161|Name=TCONS_00037161|organism=Clytia hemisphaerica|type=transcript|length=316bp|location=Sequence derived from alignment at sc0001582:36359..36674 (Clytia hemisphaerica)
GGATGAATCTCCTGATTCTGCGTCTCAAGCGTCTGCAACTCCTGACGAGA
CAAAAGACCTCCCTAAGGAACAACCACCGGCAGCGGACCCATCAACTCCA
TCTAGACGGATCAAACCGTTGACCGAGACACCACCGTCTGCCATGAGAGA
CATCAAACTTCAACTCAATCAAGTATACATACTACAATCTGATATTGAAC
TTTGTTTGGGTGAGGTAACTGACTTAATTGATGAACACTCAATCCATAAT
GCTTCAATCAAAGACACTGAAAGTATCCTTACTGAACTGAAAGAGGTACG
AAAGGGACTCCGTGCG

Coding sequence (CDS) from alignment at sc0001582:36359..36674

>TCONS_00037161 ID=TCONS_00037161|Name=TCONS_00037161|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at sc0001582:36359..36674 (Clytia hemisphaerica)
GATGAATCTCCTGATTCTGCGTCTCAAGCGTCTGCAACTCCTGACGAGAC
AAAAGACCTCCCTAAGGAACAACCACCGGCAGCGGACCCATCAACTCCAT
CTAGACGGATCAAACCGTTGACCGAGACACCACCGTCTGCCATGAGAGAC
ATCAAACTTCAACTCAATCAAGTATACATACTACAATCTGATATTGAACT
TTGTTTGGGTGAGGTAACTGACTTAATTGATGAACACTCAATCCATAATG
CTTCAATCAAAGACACTGAAAGTATCCTTACTGAACTGAAAGAGGTACGA
AAGGGACTCCGTGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021984XLOC_021984Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037161-exon-sc0001582-1491911889:36359..36674TCONS_00037161-exon-sc0001582-1491911889:36359..36674Clytia hemisphaericaexon
TCONS_00037161-exon-sc0001582-1510915933:36359..36674TCONS_00037161-exon-sc0001582-1510915933:36359..36674Clytia hemisphaericaexon
TCONS_00037161-exon-sc0001582-1575043694:36359..36674TCONS_00037161-exon-sc0001582-1575043694:36359..36674Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037161-proteinTCONS_00037161-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001582supercontigsc0001582:36359..36674 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.662999	0	0.375341	0.734425	0.894092	0.353262	0.426195	1.38033	1.11739	1.73009	4.52813	2.45505	0.543877	2.52988	0.564709	0.734181	0.497711	1.29652	0	0.871765	1.43038	1.12991	0	0	0.355917	0	0	1.94044	0.613751	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037161 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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