TCONS_00037151 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037151
Unique NameTCONS_00037151
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length651

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037151 ID=TCONS_00037151|Name=TCONS_00037151|organism=Clytia hemisphaerica|type=transcript|length=651bp
ttcccaacagcaaTTTATCCACCATTTTTGCCAACCATGCtctctaaaaa
tcaaaaattttggttcACTCCAATCCTCCATGTCCTTGTGAACAAAAAAA
GATCAATTGCTGCAGTGGCGCTAGATATGGCAAATACACCATTCTCGTAA
TCAAAATTCACTCGTAAAGGTCCGCACTCCACCAAATTGTGTATAAACAG
AACagaatttttttgtaagaacatatAGCTTCCTaggaaaaagaacaatt
tttaccTTTAAAATCTTACTTAGAAggaattctcaaaatttttgcttgTG
CAGCACGTGAGAAGGAGAAAGTTGTTCCTTCTTTCATTTAAAAATGCTGC
GTATAACCAAATGGTAGAGATACGTTAAATAATGTCCTTGTCATGTGTCA
CGCCTAAACCAAGACTATTCTAAAGTCAGGTGAtgaaataaaattagaaa
tataTATTAGTTTAGGTAAAGAAAGATAATTCTCCAATGTTTAACGCTGA
GTTTGCTTAGGAAAAGTCAGCTTTTGgtttataacttttgatgcccagtt
ttgtttgaaatgaaattttctgtgTGCTCTTGTATCATGGAAAGTAAGAA
CATGCTAGAGATTAAAAAATTCTATACGACAGAAGCTGagaaaaatccga
a
Run BLAST on NCBI

transcript from alignment at sc0001580:31162..31812

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037151 ID=TCONS_00037151|Name=TCONS_00037151|organism=Clytia hemisphaerica|type=transcript|length=651bp|location=Sequence derived from alignment at sc0001580:31162..31812 (Clytia hemisphaerica)
ttcggatttttctCAGCTTCTGTCGTATAGAATTTTTTAATCTCTAGCAT
GTTCTTACTTTCCATGATACAAGAGCAcacagaaaatttcatttcaaaca
aaactgggcatcaaaagttataaacCAAAAGCTGACTTTTCCTAAGCAAA
CTCAGCGTTAAACATTGGAGAATTATCTTTCTTTACCTAAACTAATAtat
atttctaattttatttcaTCACCTGACTTTAGAATAGTCTTGGTTTAGGC
GTGACACATGACAAGGACATTATTTAACGTATCTCTACCATTTGGTTATA
CGCAGCATTTTTAAATGAAAGAAGGAACAACTTTCTCCTTCTCACGTGCT
GCAcaagcaaaaattttgagaattccTTCTAAGTAAGATTTTAAAggtaa
aaattgttctttttcctAGGAAGCTatatgttcttacaaaaaaattctGT
TCTGTTTATACACAATTTGGTGGAGTGCGGACCTTTACGAGTGAATTTTG
ATTACGAGAATGGTGTATTTGCCATATCTAGCGCCACTGCAGCAATTGAT
CTTTTTTTGTTCACAAGGACATGGAGGATTGGAGTgaaccaaaatttttg
atttttagagaGCATGGTTGGCAAAAATGGTGGATAAAttgctgttggga
a
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021974XLOC_021974Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037151-exon-sc0001580-1491911889:31162..31812TCONS_00037151-exon-sc0001580-1491911889:31162..31812Clytia hemisphaericaexon
TCONS_00037151-exon-sc0001580-1510915933:31162..31812TCONS_00037151-exon-sc0001580-1510915933:31162..31812Clytia hemisphaericaexon
TCONS_00037151-exon-sc0001580-1575043694:31162..31812TCONS_00037151-exon-sc0001580-1575043694:31162..31812Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001580supercontigsc0001580:31162..31812 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.08244	0.855356	1.96071	2.60847	0.811667	0.754036	1.21981	1.17605	0.747357	0.388069	0.0455779	0	0	0	0	0.0892864	0	0	0	0	0	0.461473	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037151 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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