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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037142 ID=TCONS_00037142|Name=TCONS_00037142|organism=Clytia hemisphaerica|type=transcript|length=1173bp
NNGTGAATGTTCCATGCCTTGTGTGAAAGATGGCTGGATTGACggtatga
aaaaaatcctaGTGTCGTCTATTTTGCGATGGAGAGACACCCTCATAACT
AACTATGCATAGATAGATTGATACCGTGAGTTGATCTAATCtcgcaaata
tcttttcaaactCATCATAGCAACAAAAAAGCGGCAaattaatcaaaaca
ttcaCGATATCTTTTCACAGAAAATGACTAGGAGAATGgtttgtttgaat
gtttaaCTTTTAATTTACAGAGCAGAAGAATGCTATGACGAGTTTGAAAA
GACAAAATTAGACCAACTCACGGTATCAGTTGGTGAATGGTGATAATAAT
gtattttttcctttattttcttatctacAGGCCACAATGGAGAAGATCAA
AGATAATGTTACATCTTTGGTTGCCCAACATTGTGAtattctaaaatcaa
aaatcatacaAGAACTTGGAATAACTGAAAACGAGCATGTTGCATTAGTT
AATGAAATATTTGGAGATGAGAGTAATATATTTGAAGGACTTTCAACAGA
GGCACAGCAAAAATCGTTCATCAAATCAAATCTATCCCATGTGAAGCCTG
TTGAAATTGTTCTTGgttcaattttgaaaagaaaacgtAAACGAAATGAA
CTTCTCATGTCACAAAAACAGGAAACATTTATGTACATACCATTACTAGA
AACATTGGAACAGATGCTGAGTAATGataaaattttgtctctcattTTAA
GACCTGCACGATTGACTGGGAACGGCtatttttatgacatttttgatgGA
TCTGTATATAAAAATGATGAATATTTTAAGCAACATCCTACTGGAATTGC
TCTTATGTTGTTTCATGATGAAGTANTTGATTGTTTTTGCTTCCTCTGCA
ACATCTTTGGCATCTTTCACTCGTTTGGAATATTTGAATGGTTGCCAGTC
AGCGCCCGATCCTTTCAACCCAAATACTTTTGTAATATCGTTGGCATCAT
TTGCGTTTACATTTGCAAATGTAGAAAAATAATGTGCTGAGTTGCGTAAT
TCTCCAGCTAGACAGGCTGTCATCTTCATGTTGTTCGGAAGTTCACAAAc
ctgaaataaaatgaaaataaaaaataaaatctacaatTCACTGCATTGCC
TGAAGATTCCGCCAGCATGAAAC Run BLAST on NCBI protein sequence of TCONS_00037142-protein >TCONS_00037142-protein ID=TCONS_00037142-protein|Name=TCONS_00037142-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
MEKIKDNVTSLVAQHCDILKSKIIQELGITENEHVALVNEIFGDESNIFE
GLSTEAQQKSFIKSNLSHVKPVEIVLGSILKRKRKRNELLMSQKQETFMY
IPLLETLEQMLSNDKILSLILRPARLTGNGYFYDIFDGSVYKNDEYFKQH
PTGIALMLFHDEVXDCFCFLCNIFGIFHSFGIFEWLPVSARSFQPKYFCN
IVGIICVYICKCRKIMC Run BLAST on NCBI transcript from alignment at sc0001579:14950..16122 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037142 ID=TCONS_00037142|Name=TCONS_00037142|organism=Clytia hemisphaerica|type=transcript|length=1173bp|location=Sequence derived from alignment at sc0001579:14950..16122 (Clytia hemisphaerica)
GTTTCATGCTGGCGGAATCTTCAGGCAATGCAGTGAattgtagattttat
tttttattttcattttatttcaggTTTGTGAACTTCCGAACAACATGAAG
ATGACAGCCTGTCTAGCTGGAGAATTACGCAACTCAGCACATTATTTTTC
TACATTTGCAAATGTAAACGCAAATGATGCCAACGATATTACAAAAGTAT
TTGGGTTGAAAGGATCGGGCGCTGACTGGCAACCATTCAAATATTCCAAA
CGAGTGAAAGATGCCAAAGATGTTGCAGAGGAAGCAAAAACAATCAANTA
CTTCATCATGAAACAACATAAGAGCAATTCCAGTAGGATGTTGCTTAAAA
TATTCATCATTTTTATATACAGATCcatcaaaaatgtcataaaaataGCC
GTTCCCAGTCAATCGTGCAGGTCTTAAaatgagagacaaaattttatCAT
TACTCAGCATCTGTTCCAATGTTTCTAGTAATGGTATGTACATAAATGTT
TCCTGTTTTTGTGACATGAGAAGTTCATTTCGTTTacgttttcttttcaa
aattgaacCAAGAACAATTTCAACAGGCTTCACATGGGATAGATTTGATT
TGATGAACGATTTTTGCTGTGCCTCTGTTGAAAGTCCTTCAAATATATTA
CTCTCATCTCCAAATATTTCATTAACTAATGCAACATGCTCGTTTTCAGT
TATTCCAAGTTCTtgtatgatttttgattttagaataTCACAATGTTGGG
CAACCAAAGATGTAACATTATCTTTGATCTTCTCCATTGTGGCCTgtaga
taagaaaataaaggaaaaaatacATTATTATCACCATTCACCAACTGATA
CCGTGAGTTGGTCTAATTTTGTCTTTTCAAACTCGTCATAGCATTCTTCT
GCTCTGTAAATTAAAAGttaaacattcaaacaaacCATTCTCCTAGTCAT
TTTCTGTGAAAAGATATCGtgaatgttttgattaattTGCCGCTTTTTTG
TTGCTATGATGagtttgaaaagatatttgcgaGATTAGATCAACTCACGG
TATCAATCTATCTATGCATAGTTAGTTATGAGGGTGTCTCTCCATCGCAA
AATAGACGACACtaggatttttttcataccGTCAATCCAGCCATCTTTCA
CACAAGGCATGGAACATTCACNN Coding sequence (CDS) from alignment at sc0001579:14950..16122 >TCONS_00037142 ID=TCONS_00037142|Name=TCONS_00037142|organism=Clytia hemisphaerica|type=CDS|length=654bp|location=Sequence derived from alignment at sc0001579:14950..16122 (Clytia hemisphaerica)
TCAGCACATTATTTTTCTACATTTGCAAATGTAAACGCAAATGATGCCAA
CGATATTACAAAAGTATTTGGGTTGAAAGGATCGGGCGCTGACTGGCAAC
CATTCAAATATTCCAAACGAGTGAAAGATGCCAAAGATGTTGCAGAGGAA
GCAAAAACAATCAANTACTTCATCATGAAACAACATAAGAGCAATTCCAG
TAGGATGTTGCTTAAAATATTCATCATTTTTATATACAGATCcatcaaaa
atgtcataaaaataGCCGTTCCCAGTCAATCGTGCAGGTCTTAAaatgag
agacaaaattttatCATTACTCAGCATCTGTTCCAATGTTTCTAGTAATG
GTATGTACATAAATGTTTCCTGTTTTTGTGACATGAGAAGTTCATTTCGT
TTacgttttcttttcaaaattgaacCAAGAACAATTTCAACAGGCTTCAC
ATGGGATAGATTTGATTTGATGAACGATTTTTGCTGTGCCTCTGTTGAAA
GTCCTTCAAATATATTACTCTCATCTCCAAATATTTCATTAACTAATGCA
ACATGCTCGTTTTCAGTTATTCCAAGTTCTtgtatgatttttgattttag
aataTCACAATGTTGGGCAACCAAAGATGTAACATTATCTTTGATCTTCT
CCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037142-exon-sc0001579-1491911889:14950..16122 | TCONS_00037142-exon-sc0001579-1491911889:14950..16122 | Clytia hemisphaerica | exon |
| TCONS_00037142-exon-sc0001579-1510915933:14950..16122 | TCONS_00037142-exon-sc0001579-1510915933:14950..16122 | Clytia hemisphaerica | exon |
| TCONS_00037142-exon-sc0001579-1575043694:14950..16122 | TCONS_00037142-exon-sc0001579-1575043694:14950..16122 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001579 | supercontig | sc0001579:14950..16122 . |
Blast
The following BLAST results are available for this feature:
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