TCONS_00037126 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037126
Unique NameTCONS_00037126
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length263

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037126 ID=TCONS_00037126|Name=TCONS_00037126|organism=Clytia hemisphaerica|type=transcript|length=263bp
aaaggCTCAATTCAagactttgaaatttggcaaaattaaaGAAAGCTATT
GGAACTGCTAtttgatcaaaaacaaaaagaattgatAGCCAGCAATGTTG
ATGAAGAAGATGCAGCCAAGGTAGCAACCAGCAACAAAGTTATCAGAGTT
TTAGCTGACATGATGAATCTTGAGAATCCAACCAATAATAATGCAAGCAC
AACTGACAATGAAGCAGAGGTGGAAGGAGAGAAAGATGAATTGATGCTGA
TGGATGGTATTAC
Run BLAST on NCBI

transcript from alignment at sc0001575:14056..14567-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037126 ID=TCONS_00037126|Name=TCONS_00037126|organism=Clytia hemisphaerica|type=transcript|length=512bp|location=Sequence derived from alignment at sc0001575:14056..14567- (Clytia hemisphaerica)
AAAGGCTCAATTCAAGACTTTGAAATTTGGCAAAATTAAAGAAAGCTATT
GGAACTGCTATTTGATCAAAAACAAAAAGAATTGATAGCCAGCAATGTTG
ATGAAGAAGATGCAGCCAAGGTAGCAACCAGCAACAAAGTTATCAGGTGT
GTATCTGCTTGCAAAAATTCCCACCAAGGGCAAATCACTACAATTGAAGA
GCTTGACACCCTGGTTCAAGACTGGAATGGTACAGAAAAAGGGCTTCAAA
AAGCATTGGATTTGGAGATCAGGTTCAGAAAGTTCACCTTTTATAAAGTG
AAGACGACGTGTCCCTTGTTTAAACAATGTGGCTTAACAGTTGAGCAGAA
GGTGAAGAATTTGACGACTCTAATCACATCTCAACTGCAATTTAGAGTTT
TAGCTGACATGATGAATCTTGAGAATCCAACCAATAATAATGCAAGCACA
ACTGACAATGAAGCAGAGGTGGAAGGAGAGAAAGATGAATTGATGCTGAT
GGATGGTATTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021957XLOC_021957Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037126-exon-sc0001575-1575043694:14422..14567TCONS_00037126-exon-sc0001575-1575043694:14422..14567Clytia hemisphaericaexon
TCONS_00037126-exon-sc0001575-1575043694:14056..14172TCONS_00037126-exon-sc0001575-1575043694:14056..14172Clytia hemisphaericaexon
TCONS_00037126-exon-sc0001575-1510915933:14422..14567TCONS_00037126-exon-sc0001575-1510915933:14422..14567Clytia hemisphaericaexon
TCONS_00037126-exon-sc0001575-1510915933:14056..14172TCONS_00037126-exon-sc0001575-1510915933:14056..14172Clytia hemisphaericaexon
TCONS_00037126-exon-sc0001575-1491911889:14422..14567TCONS_00037126-exon-sc0001575-1491911889:14422..14567Clytia hemisphaericaexon
TCONS_00037126-exon-sc0001575-1491911889:14056..14172TCONS_00037126-exon-sc0001575-1491911889:14056..14172Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001575supercontigsc0001575:14056..14567 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.489764	0	0	0	0	0	0.840413	0	0.798928	0	0	7.19704e-06	2.73244	0	0	0.284007	0	0	0	1.33446	0.175047	0	0	0.392116	1.04481	0	0.665134	0.975433	2.7179	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037126 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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