TCONS_00037122 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037122
Unique NameTCONS_00037122
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length802

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037122 ID=TCONS_00037122|Name=TCONS_00037122|organism=Clytia hemisphaerica|type=transcript|length=802bp
cttgattgttcaattgttttgcaattttgttttggacacgtgattttaat
tgttctctttaatgacacgtggttcgcacaatgtttacattttactactt
taatgtccctttaaaattaAGCATTattaattaaataattttttcaaata
tttttattacgTCTGCTTAATATTGCAGATATCGAAATTAAGACTTTGAT
CAAAGTCTTTGCTTTGATGATGATATCAGAATTTAAGAAATCTTTATTTC
TTtagattcgaaagttttttctgatgaaaacATGGCCTCTGGTAACCAGG
TTATTAATCTTTGTCCAAGCCAATCAGAGCTTACTCGACATTTACTCGTA
ACTCTgttacatgaatctgctaataagAAATCATGTATTTCTTGTGTTAC
GGTCACTTTCtcttttgtttacttgatttatttcttgaaaattaCATGGG
ATTAAAGCAAAAGTAGATAATTTTATCGCCCGTTACACATGGTGAAGGCG
GGagaatatggcggtatggcggtAAACAGAAAAAATCggtaaatttttga
taaaattctgAATTTAAAACGACGAAAAGACAGCAAACATATCCATGGTT
TTGAATCTCAGATTGTGTAGGCGAAGATTCTTAGATAATTATGCTGGAGT
CAACTGTCAACTGGAGGTTTAATTTAAAAGTGGTCtacaacaacgacaac
aacaacaacgacaataACAAACAGTAAAACCAGCTGCGCTTTAACTCATG
GTCAcgcaaacatttttaaaaaatggtccAAGAAAAACTATCAAATACCA
AT
Run BLAST on NCBI

transcript from alignment at sc0001573:26503..27304

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037122 ID=TCONS_00037122|Name=TCONS_00037122|organism=Clytia hemisphaerica|type=transcript|length=802bp|location=Sequence derived from alignment at sc0001573:26503..27304 (Clytia hemisphaerica)
ATTGGTATTTGATAGTTTTTCTTggaccattttttaaaaatgtttgcgTG
ACCATGAGTTAAAGCGCAGCTGGTTTTACTGTTTGTtattgtcgttgttg
ttgttgtcgttgttgtaGACCACTTTTAAATTAAACCTCCAGTTGACAGT
TGACTCCAGCATAATTATCTAAGAATCTTCGCCTACACAATCTGAGATTC
AAAACCATGGATATGTTTGCTGTCTTTTCGTCGTTTTAAATTcagaattt
tatcaaaaatttaccGATTTTTTCTGTTTaccgccataccgccatattct
CCCGCCTTCACCATGTGTAACGGGCGATAAAATTATCTACTTTTGCTTTA
ATCCCATGtaattttcaagaaataaatcaagtaaacaaaagaGAAAGTGA
CCGTAACACAAGAAATACATGATTTcttattagcagattcatgtaacAGA
GTTACGAGTAAATGTCGAGTAAGCTCTGATTGGCTTGGACAAAGATTAAT
AACCTGGTTACCAGAGGCCATgttttcatcagaaaaaactttcgaatcta
AAGAAATAAAGATTTCTTAAATTCTGATATCATCATCAAAGCAAAGACTT
TGATCAAAGTCTTAATTTCGATATCTGCAATATTAAGCAGAcgtaataaa
aatatttgaaaaaattatttaattaatAATGCTtaattttaaagggacat
taaagtagtaaaatgtaaacattgtgcgaaccacgtgtcattaaagagaa
caattaaaatcacgtgtccaaaacaaaattgcaaaacaattgaacaatca
ag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021954XLOC_021954Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037122-exon-sc0001573-1491911889:26503..27304TCONS_00037122-exon-sc0001573-1491911889:26503..27304Clytia hemisphaericaexon
TCONS_00037122-exon-sc0001573-1510915933:26503..27304TCONS_00037122-exon-sc0001573-1510915933:26503..27304Clytia hemisphaericaexon
TCONS_00037122-exon-sc0001573-1575043694:26503..27304TCONS_00037122-exon-sc0001573-1575043694:26503..27304Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001573supercontigsc0001573:26503..27304 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0600448	0.130978	0	0.265769	0.163101	0.24011	0.75884	0.19379	0.151314	0.250004	0	0.160224	0.120096	0	0.187873	0.0372336	0.156274	0.0933375	0	0.274886	0.703597	0.50124	0.247539	0.149913	0.0694851	0.373144	0.755685	1.66315	0.730594	0.484653
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037122 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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