TCONS_00037114 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037114
Unique NameTCONS_00037114
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1122

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037114 ID=TCONS_00037114|Name=TCONS_00037114|organism=Clytia hemisphaerica|type=transcript|length=1122bp
ATGATATTTGATTACGAATGAAAGCTTAATTTTCCTGCTTTTTTATCCTG
TTTGTGTTTTTGTGTTTACAGAATTTGTGTGGaaattttgataacatttt
gTTAACTTTGTGCGTGATGaagattttactgaaaattctttttgttgCTG
TGATCGTCGAAACAACATTAAGTGTGTCCTCAGTAAAACCTGTAAACGGT
GTGAGTTCAACCACTGTATCAATTGGAAACGATGCCTTGTTCCAATGGAA
CATCGTGCTGGAAAACTATGACCAAGACGTTGGTTTAAAGCTTTTGAATG
GAACAACTGAATTATGGACCCAACAGTGGGGTAAAGTTAGTGATGAAGGA
AAAGCACTCTTCAAAGACAGATTGACCGTCGAGAAAAGTGTCACCTATCT
AAAAGCTACAATCAAAAATGTGGATTTCAATGATTCTACAATAGAATTGA
GAATTACAGGGGCTATTTTGGACAGCGGCTTTACTAAATTATCTGATATT
GATTCTACAATAAGCTTGATAGTTCAAgGTGGGCCATTTTATTGTGGAGA
TAAACTCGAATCAAAATATATCGTTGGACCGAATGCTAGACCAAAATTTA
AACTGTGTATTCAAAGCAATCCAGCACCAGAGATATCGTACAAATTTCCA
AGCTCAAGCAGAGCAAGTATCAAAGGCATTGTTACTGGACCAAGTCGAGA
TAACCAATATACCATAGAGTTTGAGCTTCCCCCGATAGCTGCTGTGAATT
GTGGTCGTGAGTTATTATATACAATAACTTCACCAAATTTACAAGGAAGC
ATACCTTTGACTGGAAGAAGCACAATAATCTTGACTGATATTCCTTTGGA
TGTCACAATATCATCATTTTCATACGAAAAAAAAGTACCTAAAGTCGTTT
GGAAGGAGATCGAAGCTGGGTTGTGTAGCAACAAAATTGCTTACTACATT
GAAACTGCCATAACAAAAGGACCAGTGACTGGAACATCTTTGCTCATTGA
TGACATGGGCCAAGAACAAACACAAATTTTGATGTGGGCTGAATATGACT
CTCCAACGGGAAAGAAAATTGGATCAAAAACTGACTTTGAGTTTAATAAA
ACCACGACAACCTCAGTGCCGA
Run BLAST on NCBI

transcript from alignment at sc0001573:20006..24245-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037114 ID=TCONS_00037114|Name=TCONS_00037114|organism=Clytia hemisphaerica|type=transcript|length=4240bp|location=Sequence derived from alignment at sc0001573:20006..24245- (Clytia hemisphaerica)
ATGATATTTGATTACGAATGAAAGCTTAATTTTCCTGCTTTTTTATCCTG
TTTGTGTTTTTGTGTTTACAGAATTTGTGTGGAAATTTTGATAACATTTT
GTTAACTTTGTGCGTGATGAAGATTTTACTGAAAATTCTTTTTGTTGCTG
TGATCGTCGAAACAAGTAACTTATTTACCTATAACTTTTGAAGGAATTCT
TCATTCTTTAAAGATTTGGTATCATTGGAAAGATATTAGTGAGTGGAACA
ATTTGAAATAAAAAAACTTTAAAAATTTTATAGAAATGAAGATAAAAATG
AAGAAGAAATAAAATGAAGATCTTGTAGAAAAGTTTTATAACTTCCATTT
TCACTGGAGAGATTCTTTGATATTAAAATATTTATTCAATATAAATATTT
TAATGAAATTTCTTCGCAGTGATGATCTCCTAAGATCAAAGAATCTCTTC
AATGAAAATGAAAGTTATAGCACTTTTCTACAAGTTCTACTTTTTTTCTT
CTTCATTTTCATCATCACTTTTAGAATTTTTTGGAAGATTTTTTTATTTC
AAATTGTTCCACTCACTAATATCTTTCCAATGATACCAAATTTATAAAGA
TTGAAGAATTCCTTCAAAAGTTATAGGTAAAAGAAAAAAGAGTGCACACT
TATCGTGAATAGACTTTAAACCTTTAGACCCGCTCATCTTCTTAAACCGC
ACTCGTAGCAGGTGATTTTCCCTGAACTTAACGCTTTGCTTCGTTGAATA
TCACTTTCCTCCAGTTAATAAATCGCAATACCAAATATAAGGTCAGGACA
TGTAATATCTGATTGATAGCGGTTTTCTCAGATATTTGCTCTAGTATTTA
AATATATCCTTATGTTATCATTTCAGCATTAAGTGTGTCCTCAGTAAAAC
CTGTAAACGGTGTGAGTTCAACCACTGTATCAATTGGAAACGATGCCTTG
TTCCAATGGAACATCGTGCTGGAAAACTATGACCAAGACGTTGGTTTAAA
GCTTTTGAATGGAACAACTGAATTATGGACCCAACAGTGGGGTAAAGTTA
GTGATGAAGGAAAAGCACTCTTCAAAGACAGATTGACCGTCGAGAAAAGT
GTCACCTATCTAAAAGCTACAATCAAAAATGTGGATTTCAATGATTCTAC
AATAGAATTGAGAATTACAGGGGCTATTTTGGACAGCGGCTTTACTAAAT
TATCTGATATTGATTCTACAATAAGCTTGATAGTTCAAGGTAAGAAAATG
ATCTATGTTCAGAGGATTATATTTATATATATGCCCTTGTCTCGATGACC
TGGTGATTTTCAAAATCTTCGCAAACCTAGTCTCCTTTTTATTTAGTTCT
TGCATTGGACANGCTTTGCTTCGTTGAATATCACTTTCCTCCAGTTAATA
AATCGCAATACCAAATATAAGGTCAGGACATGTAATATCTGATTGATAGC
GGTTTTCTCAGATATTTGCTCTAGTATTTAAATATATCCTTATGTTATCA
TTTCAGCATTAAGTGTGTCCTCAGTAAAACCTGTAAACGGTGTGAGTTCA
ACCACTGTATCAATTGGAAACGATGCCTTGTTCCAATGGAACATCGTGCT
GGAAAACTATGACCAAGACGTTGGTTTAAAGCTTTTGAATGGAACAACTG
AATTATGGACCCAACAGTGGGGTAAAGTTAGTGATGAAGGAAAAGCACTC
TTCAAAGACAGATTGACCGTCGAGAAAAGTGTCACCTATCTAAAAGCTAC
AATCAAAAATGTGGATTTCAATGATTCTACAATAGAATTGAGAATTACAG
GGGCTATTTTGGACAGCGGCTTTACTAAATTATCTGATATTGATTCTACA
ATAAGCTTGATAGTTCAAGGTAAGAAAATGATCTATGTTCAGAGGATTAT
ATTTATATATATGCCCTTGTCTCGATGACCTGGTGATTTTCAAAATCTTC
GCAAACCTAGTCTCCTTTTTATTTAGTTCTTGCATTGGACAAAAATCCCC
TCTAAGGGGACTTGGGTAAGTTATGGGTATTGCTGGTATTTTTTGCTGAC
GTAATCTGAATTTCAAAAAGAATTTTCATATATTTTTATATGTATACCGT
ATTACTTCGAATGAACGCCCCTTCTTTTCAACGCGCCTTCGAATAAGCGC
CCCTCCTAAAAGGAAAATTATTTAAAAAACGCCCCCCTCAAATAAACGCC
CCCCTCAAATAAACGTCCCCTTCGAATGAACGCCCCCTCTAGGGAAGGGG
CGTTTATTAGAAACGTGCGACCTTAATACTTCAATACCAGTGTTGATTGG
GTTTGAAAAGGAAGATTTTATTCATTTCTTGTAACCAGATGCAATTTTAA
TCGTTGAACCAAAGAAATTTTGCAATAAAATCCTGATAAAGAACTAAAAA
AAAGGGTATTAGGTTACACATCAGGCTAGGAACTACATTATAGTACCCTT
CATATTCAGTCATTTTTTGGTCGTTTTCTGTCGGTTAATGCGATCTAAAA
ATTATGGTAATTTTAAGACATGCCATAATCCGAGGAGTTTTTCTGAGAAG
GCTAAGTACTGCTTGAAATTATACCATTACACCAAAAAATAATATCTTTA
AATTGATACTGTCTCGTATATTGGCTTAACTTTCCTTCTGGCGTATATTT
TCGGGATATTTCTGCTGTTTTTTTTCCTGCAATACTGAAAAATATTAAAT
TAAAAATCCAGCAAGATCCTAAGATTTACAGCGATTTTCCAAGTGAAAAA
GAGAGTCTACAGAGACTTGCAATATAATGGGATGTATTTTTCTCCAACCA
GCAAAACGAGAATTGTATTGTATGTTGTTTATAGCTATACTTAGGTATAA
AAAGTTGTCAGCAAAAACCTCTTACCACATCAAACACATTAAGCAGAATT
GAAGCTTCTTAGTAAAGAAAGGTGCAAAATTATATTTAGAATTATCCGTA
CATCCTGTGCCCAAGTTCAGGAGTTGCCATAAAGCCATTATGGTAATAAC
CGGGAGGGCACATTGCTATACATNAAAACCTCTTACCACATCAAACACAT
TAAGCAGAATTGAAGCCTCTTAGTAAAGAAAGGTGCAAAATTATATTTAG
AATTATCAAAACTATCAAAGTAATTTCTATGTCGGTTGACCGTATTTTCT
AGGTGGGCCATTTTATTGTGGAGATAAACTCGAATCAAAATATATCGTTG
GACCGAATGCTAGACCAAAATTTAAACTGTGTATTCAAAGCAATCCAGCA
CCAGAGATATCGTACAAATTTCCAAGCTCAAGCAGAGCAAGTATCAAAGG
CATTGTTACTGGACCAAGTCGAGATAACCAATATACCATAGAGTTTGAGC
TTCCCCCGATAGCTGCTGTGAATTGTGGTCGTGAGTTATTATATACAATA
ACTTCACCAAATTTACAAGGAAGCATACCTTTGACTGGAAGAAGCACAAT
AATCTTGACTGGTAAGTGAATTCATGATATTCATGACGTAATGTTTTCTA
CAGAAAGGACCCTGTTTTTGCCAGTAGTGGCAAATTTTATACAACTTTTA
TCTAGTTCAAATTTGCCACTACTGGCTAAAACCGGGGTATTTCCGTGGAA
AGCATTACGTCATGAATATCATGAATTTAGCAAATATTGGTACTTTCCTT
AACAGCTGATCTAGGGGGCCATGTCGTTATAGATTCCAAAAAACAGACTC
TGTCAGAAATCAAGTTTTTTTTAAACATTGGACTCTGTTAGAAACGGAAT
TTAGACTGGTCAGATGCAAAATTTTCCATGTCCCATGTCTCCATGTCCCG
TCCCCGTTCCCGTGCCCCATTTTGTTTGAATTTCCTAGCAAATATTTTCG
CAAACATCAATTTATATAACTTTTTTGCACATTCAATTTCTGGAAGGGCT
GTGAAGGTGAATGAATTTTCATTCTTCAAAATCTTACTTCGCTTTTCTTG
AATAGATATTCCTTTGGATGTCACAATATCATCATTTTCATACGAAAAAA
AAGTACCTAAAGTCGTTTGGAAGGAGATCGAAGCTGGGTTGTGTAGCAAC
AAAATTGCTTACTACATTGAAACTGCCATAACAAAAGGACCAGTGACTGG
AACATCTTTGCTCATTGATGACATGGGCCAAGAACAAACACAAATTTTGA
TGTGGGCTGAATATGACTCTCCAACGGGAAAGAAAATTGGATCAAAAACT
GACTTTGAGTTTAATAAAACCACGACAACCTCAGTGCCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021950XLOC_021950Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037114-exon-sc0001573-1575043694:24081..24245TCONS_00037114-exon-sc0001573-1575043694:24081..24245Clytia hemisphaericaexon
TCONS_00037114-exon-sc0001573-1575043694:23007..23369TCONS_00037114-exon-sc0001573-1575043694:23007..23369Clytia hemisphaericaexon
TCONS_00037114-exon-sc0001573-1575043694:20785..21093TCONS_00037114-exon-sc0001573-1575043694:20785..21093Clytia hemisphaericaexon
TCONS_00037114-exon-sc0001573-1575043694:20006..20290TCONS_00037114-exon-sc0001573-1575043694:20006..20290Clytia hemisphaericaexon
TCONS_00037114-exon-sc0001573-1510915933:24081..24245TCONS_00037114-exon-sc0001573-1510915933:24081..24245Clytia hemisphaericaexon
TCONS_00037114-exon-sc0001573-1510915933:23007..23369TCONS_00037114-exon-sc0001573-1510915933:23007..23369Clytia hemisphaericaexon
TCONS_00037114-exon-sc0001573-1510915933:20785..21093TCONS_00037114-exon-sc0001573-1510915933:20785..21093Clytia hemisphaericaexon
TCONS_00037114-exon-sc0001573-1510915933:20006..20290TCONS_00037114-exon-sc0001573-1510915933:20006..20290Clytia hemisphaericaexon
TCONS_00037114-exon-sc0001573-1491911889:24081..24245TCONS_00037114-exon-sc0001573-1491911889:24081..24245Clytia hemisphaericaexon
TCONS_00037114-exon-sc0001573-1491911889:23007..23369TCONS_00037114-exon-sc0001573-1491911889:23007..23369Clytia hemisphaericaexon
TCONS_00037114-exon-sc0001573-1491911889:20785..21093TCONS_00037114-exon-sc0001573-1491911889:20785..21093Clytia hemisphaericaexon
TCONS_00037114-exon-sc0001573-1491911889:20006..20290TCONS_00037114-exon-sc0001573-1491911889:20006..20290Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001573supercontigsc0001573:20006..24245 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.271934	0.212976	0	0.171931	2.53057	1.82716	1.238	1.6475	0.924847	2.15911	1.74614	0.800296	2.07513	1.39215	2.95688	2.18107	1.48814	1.49433	5.55551	4.41919	0.737405	0.875959	0.847576	0.593079	0.71316	0.823326	1.12865	1.50994	1.64325	0.909841
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037114 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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