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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037108 ID=TCONS_00037108|Name=TCONS_00037108|organism=Clytia hemisphaerica|type=transcript|length=1575bp
agaaataagagattttgaaagatatttttctgAGAAACAAGCTTCTGTTT
GAAGctaaaaaattgtctttttatAATAAACATGCACTCTagtgttttta
tttacaaaacaTAAGTCAACTACTTGGTGGAACAGGTAAACAATTTCTTT
ATATGAATATAACCATGTGTACTATGGATTTGAATAAGACTGTTTTGCTG
GTTATTATGagattcaattttatttttaaaggtgCATCGAGCTTGAGATT
TTAATTAAATTGGAGCAAAATGACACAGCCACAGATTAAAAATCAGTCAA
CTAAATAAGAGTGGAAGCTGACCCCACCCAAAACATATAGCAAACAAAAG
AACCAAAGGCTATAACCAGTATAGACCAAGGAAAAAACAGCCCAAAATGT
GATCtaaggaaaaataaaatatgaaaataaaccGTATGCTAATACAtgtc
aaaactaaaataataTAAAGTCTTTGTGTGTAAATATGAGTAAATATaac
tttcaaaactaaaaaactttgtcttttaaggaaaaaaatgtGTCAGTCTT
CAAACTAAATTTTCATGGTCAATCATTCTagtgatgatttttttcttgtc
aAAAGAGAAGTCCATGTTCTTCATTTGAAGGATGgcATGTGCTCAAAATA
TGTACAACCTGATAAAATAATGTTCTAAGGAAAAATAGAATATGAAAATA
TACTGTATGCTAATACATGTCAAAACTAATATAATATAAAGTCTTTGTGA
GTAAATATGAGTAAATATATaactttcaaaactaaaaaacttTGTCGTTT
AAGGAAAAATGTGTCAGACTTCAAACTAAATCTTCATGGTCAACCATTCT
tgtgatgatttttttcttgtcaAAAGAGAAGTCCACGTTCTCCATTTCCA
AGATGGCATTGACATATTGATCATTTCCAACACCCTCTCCATTCGCCTTG
AAATATGTTTTCACGCAGTCATGAAAAGCTGTAAGATGAAGTTGTCGTGA
GTTACTTtcaatcacgatttcaaaacaAGATGTTAGAGTTAACCTTTTTG
TTGAAACCTGTTGGCGACAATGTGGACATGTAACACGTGGTTTTTCCTTG
TCATCAGATACAATAACAATCTTTTTCCGACACGAAATTATGGGGCATGC
TGAATATTCGTGAACTTTGGCACCAATAACTGATGGACAGCAAATTCTTG
TCGCACGTGTAGAATCTTCTGTTGGATGCTGGTCCCAATTAAAGGAATTC
TTAACCTCCACACCAGATATTTTTGTGTCACCTGAGGATGCTAATCGTAA
TATATTGTGGAAGTAAGACACCACCAATTCAGTCATCTGATAGGATTTTC
CTTCTTCGATAACCCCAAACAACTCTTCATTCCAAATAGTAATTGGCAAT
TGATGATTAGATTTGTCAATGATCAGACCTTCACGCAACTTCCTTGGATA
GCCATaaacattcttttgttttggataTTCCGTCCATCTTACTTGACCGG
TGATTGTAAATCTTCCATCAGGGGGTGCGAGGATAACATCTGCTACAGTG
ATCTCCTGAATATCATCTGGTgaaa Run BLAST on NCBI transcript from alignment at sc0001573:42370..45531+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037108 ID=TCONS_00037108|Name=TCONS_00037108|organism=Clytia hemisphaerica|type=transcript|length=3162bp|location=Sequence derived from alignment at sc0001573:42370..45531+ (Clytia hemisphaerica)
agaaataagagattttgaaagatatttttctgAGAAACAAGCTTCTGTTT
GAAGctaaaaaattgtctttttatAATAAACATGCACTCTagtgttttta
tttacaaaacaTAAGTCAACTACTTGGTGGAACAGGTAAACAATTTCTTT
ATATGAATATAACCATGTGTACTATGGATTTGAATAAGACTGTTTTGCTG
GTTATTATGagattcaattttatttttaaaggtgCATCGAGCTTGAGATT
TTAATTAAATTGGAGCAAAATGACACAGCCACAGATTAAAAATCAGTCAA
CTAAATAAGAGTGGAAGCTGACCCCACCCAAAACATATAGCAAACAAAAG
AACCAAAGGCTATAACCAGTATAGACCAAGGAAAAAACAGCCCAAAATGT
GATCtaaggaaaaataaaatatgaaaataaaccGTATGCTAATACAtgtc
aaaactaaaataataTAAAGTCTTTGTGTGTAAATATGAGTAAATATaac
tttcaaaactaaaaaactttgtcttttaaggaaaaaaatgtGTCAGTCTT
CAAACTAAATTTTCATGGTCAATCATTCTagtgatgatttttttcttgtc
aAAAGAGAAGTCCATGTTCTTCATTTGAAGGATGGCatgtatggcgcgcc
aaagcggaaataaatactatctttttaaaacaatactatcttcgtttaaa
acatactatcttttttttaaaacatactatcttcgtttaaNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTTaatcgaaaatagtatttttttaaaaag
atagtatgttttaaacgaagatagtattgttttaaagagatagtatttat
ttccgctttggcgcgccataggcATGTGCTCAAAATATGTACAACCTGAT
AAAATAATGTTCTAAGGAAAAATAGAATATGAAAATATACTGTATGCTAA
TACATGTCAAAACTAATATAATATAAAGTCTTTGTGAGTAAATATGAGTA
AATATATaactttcaaaactaaaaaacttTGTCGTTTAAGGAAAAATGTG
TCAGACTTCAAACTAAATCTTCATGGTCAACCATTCTtgtgatgattttt
ttcttgtcaAAAGAGAAGTCCACGTTCTCCATTTCCAAGATGGCATTGAC
ATATTGATCATTTCCAACACCCTCTCCATTCGCCTTGAAATATGTTTTCA
CGCAGTCATGAAAAGCTGTAAGATGAAGTTGTCGTGAGTTACTTtcaatc
acgatttcaaaacaAGATGTTAGAGTTAACCTTTTTGTTGAAACCTGTTG
GCGACAATGTGGACATGTAACACGTGGTTTTTCCTTGTCATCAGATACAA
TAACAATCTTTTTCCGACACGAAATTATGGGGCATGCTGAATATTCGTGA
ACTTTGGCACCAATAACTGATGGACAGCAAATTCTTGTCGCACGTGTAGA
ATCTTCTGTTGGATGCTGGTCCCAATTAAAGGAATTCTTAACCTCCACAC
CAGATATTTTTGTGTCACCTGAGGATGCTAATCGTAATATATTGTGGAAG
TAAGACACCACCAATTCAGTCATCTGATAGGATTTTCCTTCTTCGATAAC
CCCAAACAACTCTTCATTCCAAATAGTAATTGGCAATTGATGATTAGATT
TGTCAATGATCAGACCTTCACGCAACTTCCTTGGATAGCCATaaacattc
ttttgttttggataTTCCGTCCATCTTACTTGACCGGTGATTGTAAATCT
TCCATCAGGGGGTGCGAGGATAACATCTGCTACAGTGATCTCCTGAATAT
CATCTGGTgaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037108-exon-sc0001573-1491911889:42370..43003 | TCONS_00037108-exon-sc0001573-1491911889:42370..43003 | Clytia hemisphaerica | exon |
| TCONS_00037108-exon-sc0001573-1510915933:42370..43003 | TCONS_00037108-exon-sc0001573-1510915933:42370..43003 | Clytia hemisphaerica | exon |
| TCONS_00037108-exon-sc0001573-1575043694:42370..43003 | TCONS_00037108-exon-sc0001573-1575043694:42370..43003 | Clytia hemisphaerica | exon |
| TCONS_00037108-exon-sc0001573-1491911889:44591..45531 | TCONS_00037108-exon-sc0001573-1491911889:44591..45531 | Clytia hemisphaerica | exon |
| TCONS_00037108-exon-sc0001573-1510915933:44591..45531 | TCONS_00037108-exon-sc0001573-1510915933:44591..45531 | Clytia hemisphaerica | exon |
| TCONS_00037108-exon-sc0001573-1575043694:44591..45531 | TCONS_00037108-exon-sc0001573-1575043694:44591..45531 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001573 | supercontig | sc0001573:42370..45531 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012340 | NA-bd_OB-fold |
Blast
The following BLAST results are available for this feature:
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