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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037104 ID=TCONS_00037104|Name=TCONS_00037104|organism=Clytia hemisphaerica|type=transcript|length=1110bp
CATAGGTTAAAACATCAATCCTGTTGTGCTCCAAAATTTCAATGGCCGAG
CAAAACCAACGTTGCTCGCAACCCGGTACACATGATCCTCTTAAAACCTC
CCGTAATACCTCCATTCTGACTTGGGGTTCGGGGTGGTCTGCTGGAGCCA
AAGAGTTTTCCAAATTCGAATTTCCCTCAAAGAGAGAAGAGATTTCCTTT
GGACGGACCTGGCGATCGATCAGGAAACGCGCCAAGTCATTTTGGTACTG
GCTTCAAATCTACCGACTGTTGGTACTTTTGGTTGCTTCTGGGCTGCGGC
TTCTGGGTTTGACTCCTGTGAACGTCGGGACTGGGACCGTGTGGTTGGTC
TGCTGGATGATGGGGTGTTGTCTGTGGTAGGTTGGGCGGCTTGTGCTTCC
CTTGCCGCTTTTGCATTCAAGCGTCGTTTGGCAACAGCTTTTTTCGTTTT
GGGTGACCCAAGAGCGGCAAGCAGCGGATGGTTGGGGCTAACTGCATCAG
GGTCTTCTTTGACAGCGTAGCGTTGTGCATAAGGATACATGTTGTGCTCA
CCTGAAAAGTTGACCACAACGTCATGATCTTCCATCAACTTAGTTTTGTC
TTGATTCCAACGCATCACTGTGGTTAACTTAAGTGCCAGGTGGTAGTGGA
ACCCGGAAGTGTTTGGATGCGCACATGACCACATGCCCAATATTCTACTC
GTCCCTGAGCTTTACTGTCATTGAATAGGCCCTCCACcaaccaagcaaaa
tcttctctCTTGGGGAATCTTGTCAAATCAGCTTGACTGTACGTGACAAG
ATACGTCATGCGGTTTTGTCTTGAATGCAAGGGTGGTAGTTTGCTGGGCT
TTGCTGGTATCTCCATGGCTTTGTGCTAAAAGGTGCGAACTACAAGATAT
AGATAAAGCTTCACTTAGCAGCTGGTCAGGTATCAAGCCGTAGACATACA
GTTTTGTTGCGTTAAAAACTTTCTTAGCTTTGTAAATATCATCCTTTGTc
ttattgtttttaaaatttacatACATTTACAGTGTTATATTTTATTGTGT
ACATACCTGTGCTGTAAGTAGTGTCTGTGTGAatatgaaaaaggaaaaag
tctTCAGGTG Run BLAST on NCBI protein sequence of TCONS_00037104-protein >TCONS_00037104-protein ID=TCONS_00037104-protein|Name=TCONS_00037104-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MWSCAHPNTSGFHYHLALKLTTVMRWNQDKTKLMEDHDVVVNFSGEHNMY
PYAQRYAVKEDPDAVSPNHPLLAALGSPKTKKAVAKRRLNAKAAREAQAA
QPTTDNTPSSSRPTTRSQSRRSQESNPEAAAQKQPKVPTVGRFEASTKMT
WRVS Run BLAST on NCBI transcript from alignment at sc0001572:31962..33071 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037104 ID=TCONS_00037104|Name=TCONS_00037104|organism=Clytia hemisphaerica|type=transcript|length=1110bp|location=Sequence derived from alignment at sc0001572:31962..33071 (Clytia hemisphaerica)
CACCTGAagactttttcctttttcatatTCACACAGACACTACTTACAGC
ACAGGTATGTACACAATAAAATATAACACTGTAAATGTatgtaaatttta
aaaacaataagACAAAGGATGATATTTACAAAGCTAAGAAAGTTTTTAAC
GCAACAAAACTGTATGTCTACGGCTTGATACCTGACCAGCTGCTAAGTGA
AGCTTTATCTATATCTTGTAGTTCGCACCTTTTAGCACAAAGCCATGGAG
ATACCAGCAAAGCCCAGCAAACTACCACCCTTGCATTCAAGACAAAACCG
CATGACGTATCTTGTCACGTACAGTCAAGCTGATTTGACAAGATTCCCCA
AGagagaagattttgcttggttgGTGGAGGGCCTATTCAATGACAGTAAA
GCTCAGGGACGAGTAGAATATTGGGCATGTGGTCATGTGCGCATCCAAAC
ACTTCCGGGTTCCACTACCACCTGGCACTTAAGTTAACCACAGTGATGCG
TTGGAATCAAGACAAAACTAAGTTGATGGAAGATCATGACGTTGTGGTCA
ACTTTTCAGGTGAGCACAACATGTATCCTTATGCACAACGCTACGCTGTC
AAAGAAGACCCTGATGCAGTTAGCCCCAACCATCCGCTGCTTGCCGCTCT
TGGGTCACCCAAAACGAAAAAAGCTGTTGCCAAACGACGCTTGAATGCAA
AAGCGGCAAGGGAAGCACAAGCCGCCCAACCTACCACAGACAACACCCCA
TCATCCAGCAGACCAACCACACGGTCCCAGTCCCGACGTTCACAGGAGTC
AAACCCAGAAGCCGCAGCCCAGAAGCAACCAAAAGTACCAACAGTCGGTA
GATTTGAAGCCAGTACCAAAATGACTTGGCGCGTTTCCTGATCGATCGCC
AGGTCCGTCCAAAGGAAATCTCTTCTCTCTTTGAGGGAAATTCGAATTTG
GAAAACTCTTTGGCTCCAGCAGACCACCCCGAACCCCAAGTCAGAATGGA
GGTATTACGGGAGGTTTTAAGAGGATCATGTGTACCGGGTTGCGAGCAAC
GTTGGTTTTGCTCGGCCATTGAAATTTTGGAGCACAACAGGATTGATGTT
TTAACCTATG Coding sequence (CDS) from alignment at sc0001572:31962..33071 >TCONS_00037104 ID=TCONS_00037104|Name=TCONS_00037104|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at sc0001572:31962..33071 (Clytia hemisphaerica)
ATGTGGTCATGTGCGCATCCAAACACTTCCGGGTTCCACTACCACCTGGC
ACTTAAGTTAACCACAGTGATGCGTTGGAATCAAGACAAAACTAAGTTGA
TGGAAGATCATGACGTTGTGGTCAACTTTTCAGGTGAGCACAACATGTAT
CCTTATGCACAACGCTACGCTGTCAAAGAAGACCCTGATGCAGTTAGCCC
CAACCATCCGCTGCTTGCCGCTCTTGGGTCACCCAAAACGAAAAAAGCTG
TTGCCAAACGACGCTTGAATGCAAAAGCGGCAAGGGAAGCACAAGCCGCC
CAACCTACCACAGACAACACCCCATCATCCAGCAGACCAACCACACGGTC
CCAGTCCCGACGTTCACAGGAGTCAAACCCAGAAGCCGCAGCCCAGAAGC
AACCAAAAGTACCAACAGTCGGTAGATTTGAAGCCAGTACCAAAATGACT
TGGCGCGTTTCCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037104-exon-sc0001572-1491911889:31962..33071 | TCONS_00037104-exon-sc0001572-1491911889:31962..33071 | Clytia hemisphaerica | exon |
| TCONS_00037104-exon-sc0001572-1510915933:31962..33071 | TCONS_00037104-exon-sc0001572-1510915933:31962..33071 | Clytia hemisphaerica | exon |
| TCONS_00037104-exon-sc0001572-1575043694:31962..33071 | TCONS_00037104-exon-sc0001572-1575043694:31962..33071 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001572 | supercontig | sc0001572:31962..33071 . |
Blast
The following BLAST results are available for this feature:
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