TCONS_00037102 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037102
Unique NameTCONS_00037102
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length649

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037102 ID=TCONS_00037102|Name=TCONS_00037102|organism=Clytia hemisphaerica|type=transcript|length=649bp
GAAAGATCTTGAATCTGTTGACGTTTTGTTCACTTCGCCGGAGACAATAT
TGTCGGATTCCAGTAGggatcttttaaagaaaaaggatttcatcaaaata
atctgTGCTGTGTTTGTGGATGAAAGCCATTGTATTGAGAAATGgGGAAC
ATCAAGTGACAAACGACGAGCAGCTTTCCGTGCATCTTTTTCTCAACTTG
CAGAAGTCCGCTCTCTTCTTGCCAAACCCATTCCTTTTGTTGCCATGACG
GCAACTGCAATGAGAAGAACAAGGGATTTTATAATTGCCAATTTACAAAT
GTATCAGCCAAAACTATATATTCGCAGTCCTTGAAAGCAAAACATTATAT
ACACACTACATACAGTTAATCacaaaaatgttgataaaattttccaaccc
cttaTTGAAGAACTGAGAATTCATAAATATGATTGTGAGCGAgtggttat
tttttcaaatcgtGATAATGTCGTTGATATCTTTGGTTCTTTTGACTATA
TACTTCGGGAAGAATATCCAATGTACGAGACAAGACCCTACGCAATGTAC
CATTCTACCACAGAGGAACCAATCAAAAAACACATTGTTGAATCCTTCCA
AGACCCTAATGGAACCATTAGAATTTTAATGGCAACAATAGCCGTTGGT
Run BLAST on NCBI

protein sequence of TCONS_00037102-protein

>TCONS_00037102-protein ID=TCONS_00037102-protein|Name=TCONS_00037102-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
KDLESVDVLFTSPETILSDSSRDLLKKKDFIKIICAVFVDESHCIEKWGT
SSDKRRAAFRASFSQLAEVRSLLAKPIPFVAMTATAMRRTRDFIIANLQM
YQPKLYIRSP
Run BLAST on NCBI

transcript from alignment at sc0001572:25429..26434-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037102 ID=TCONS_00037102|Name=TCONS_00037102|organism=Clytia hemisphaerica|type=transcript|length=1006bp|location=Sequence derived from alignment at sc0001572:25429..26434- (Clytia hemisphaerica)
GAAAGATCTTGAATCTGTTGACGTTTTGTTCACTTCGCCGGAGACAATAT
TGTCGGATTCCAGTAGGGATCTTTTAAAGAAAAAGGATTTCATCAAAATA
ATCTGTGCTGTGTTTGTGGATGAAAGCCATTGTATTGAGAAATGGTAAGT
TATCTAGTATATGTAAGATTTATTTTTTAAGCATTTTATATGATAATTTG
AAAACCATACAATTAAACCGTCAACTGATATGAAGTTACTTTCATCAGTA
TGGGGTACTAACTTTTATCCCCTCCAAATGACAGACAGACTTTTATATGG
TTCTCAATATATAAACTTTTGAAGTTCATAACTGATATCAAAACTGATTT
TGTTTGATTATTAGCTACTGTAAGTTTACTAATTATTGAACAGACCAGAA
AATGTTGATGGTTTGTTGGGAAAATTTTTTATTCAGTGTCAAAAGTTAAA
TAGCTACATTACATTGTCATAATCATGTCTATTTTATTTTGCAATTTTCA
GGGGAACATCAAGTGACAAACGACGAGCAGCTTTCCGTGCATCTTTTTCT
CAACTTGCAGAAGTCCGCTCTCTTCTTGCCAAACCCATTCCTTTTGTTGC
CATGACGGCAACTGCAATGAGAAGAACAAGGGATTTTATAATTGCCAATT
TACAAATGTATCAGCCAAAACTATATATTCGCAGTCCTTGAAAGCAAAAC
ATTATATACACACTACATACAGTTAATCACAAAAATGTTGATAAAATTTT
CCAACCCCTTATTGAAGAACTGAGAATTCATAAATATGATTGTGAGCGAG
TGGTTATTTTTTCAAATCGTGATAATGTCGTTGATATCTTTGGTTCTTTT
GACTATATACTTCGGGAAGAATATCCAATGTACGAGACAAGACCCTACGC
AATGTACCATTCTACCACAGAGGAACCAATCAAAAAACACATTGTTGAAT
CCTTCCAAGACCCTAATGGAACCATTAGAATTTTAATGGCAACAATAGCC
GTTGGT

Coding sequence (CDS) from alignment at sc0001572:25429..26434-

>TCONS_00037102 ID=TCONS_00037102|Name=TCONS_00037102|organism=Clytia hemisphaerica|type=CDS|length=666bp|location=Sequence derived from alignment at sc0001572:25429..26434- (Clytia hemisphaerica)
GGGAACATCAAGTGACAAACGACGAGCAGCTTTCCGTGCATCTTTTTCTC
AACTTGCAGAAGTCCGCTCTCTTCTTGCCAAACCCATTCCTTTTGTTGCC
ATGACGGCAACTGCAATGAGAAGAACAAGGGATTTTATAATTGCCAATTT
ACAAATGTATCAGCCAAAACTATATATTCGCAGTCCTTGAAAAGATCTTG
AATCTGTTGACGTTTTGTTCACTTCGCCGGAGACAATATTGTCGGATTCC
AGTAGGGATCTTTTAAAGAAAAAGGATTTCATCAAAATAATCTGTGCTGT
GTTTGTGGATGAAAGCCATTGTATTGAGAAATGGGGAACATCAAGTGACA
AACGACGAGCAGCTTTCCGTGCATCTTTTTCTCAACTTGCAGAAGTCCGC
TCTCTTCTTGCCAAACCCATTCCTTTTGTTGCCATGACGGCAACTGCAAT
GAGAAGAACAAGGGATTTTATAATTGCCAATTTACAAATGTATCAGCCAA
AACTATATATTCGCAGTCCTTGAAAAGATCTTGAATCTGTTGACGTTTTG
TTCACTTCGCCGGAGACAATATTGTCGGATTCCAGTAGGGATCTTTTAAA
GAAAAAGGATTTCATCAAAATAATCTGTGCTGTGTTTGTGGATGAAAGCC
ATTGTATTGAGAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021942XLOC_021942Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037102-proteinTCONS_00037102-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037102-exon-sc0001572-1575043694:26291..26434TCONS_00037102-exon-sc0001572-1575043694:26291..26434Clytia hemisphaericaexon
TCONS_00037102-exon-sc0001572-1575043694:25429..25933TCONS_00037102-exon-sc0001572-1575043694:25429..25933Clytia hemisphaericaexon
TCONS_00037102-exon-sc0001572-1510915933:26291..26434TCONS_00037102-exon-sc0001572-1510915933:26291..26434Clytia hemisphaericaexon
TCONS_00037102-exon-sc0001572-1510915933:25429..25933TCONS_00037102-exon-sc0001572-1510915933:25429..25933Clytia hemisphaericaexon
TCONS_00037102-exon-sc0001572-1491911889:26291..26434TCONS_00037102-exon-sc0001572-1491911889:26291..26434Clytia hemisphaericaexon
TCONS_00037102-exon-sc0001572-1491911889:25429..25933TCONS_00037102-exon-sc0001572-1491911889:25429..25933Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001572supercontigsc0001572:25429..26434 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.68494	0.876163	1.92168	0.312939	1.75133	0.922505	1.06229	1.52735	0.80549	1.47364	0	0.23029	0	0.0178694	0	0.0896923	0.0779589	0	0.0924502	0	0.535548	0.637935	0.0318446	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR027417P-loop_NTPase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037102 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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