|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037096 ID=TCONS_00037096|Name=TCONS_00037096|organism=Clytia hemisphaerica|type=transcript|length=1867bp
GACGTCTGAATCATGAGGTGTTGGAAATGTAATGTCTTTCAGGTGTTGAA
ATTCTGTTTTCACTTTATTGATGTCGTACCTATTTACTGGTACGTCAAGG
TTCTCAATTACCCAAACGTTGTCGAGTTTCTCTTTGGTTTTGTTGTCGTG
TGATTCAAGATTGAAGCAGACTCTTTTTGATTGCAGACTTGTCTCCTTTG
ATAATACGTTCGACATTTGAAGAGTTTCTTTCTTACCGGATAGGTGTAGA
GCCTCGGCGGTATCAGCACGAATCAAGGTACTATCAGATCCAGAGTCGAG
GACTGCATTGGTTTTGATGCTGTATTTACCATTTGATAATACGACAGGGA
CAATTTGAAGGAAGGTCTGGTTGGTAGTAGAACATTGCATACTTTTTGCT
GATCCAGGAGTATCAGTGGTAGTGGCTGTATCTCTGTGAAGCAAAGTGTG
ATGTTTTTTACCACATTCGTCCTTGGTACATGTAAATTTGGAAGGACACT
CTTTAATGAGATGATTGTTAGAGAAACAGTTGAAACAAAGTCCTTTTTCT
CTCACGATTTTCTGTCGATCGTCTGTAGATGCATTGAGGATCTTTggaca
ttttgatattttgtggtCTTTGGAGCACAGCCAGCATTTGAATTGCCTAC
CGATGAAATTGTTTCGAAATTTTAGGTTTCTACTTTCTTTGTCTTTCGGT
GACTTCGACGTTTTTTCATCACTGATGATCATGGCAATGGGATTGAACAA
CTCTTTGACGATACATTCGAGCCAGTTGACAAATACGTAGAGGTCAGTCA
ATTTGGGTTGATCGTTACCATATCTATTAAAGAATCGGAACTTGTGTTGT
ATTGGAATGATAGATACTGCTTTGGCGACGGTTTCTGGATTGTTGTAGCT
ACTGTTGCCAATGGATTCGAACCATGCCATTGCTGTCTTCAACTGTTGGT
AGAAGTTTCTCAATCCTTCATGGTCGGTTATGGTGATTTGAGGTCTGTCA
AACATTTCTTTCAGCTTGAGATGAGCGATGACGTAAGGGTTGCCATAATC
ACGTTTTAAGGCCTTCAGTGCTGTCGCGTAGAAGATAGAATTGGTTCCGA
TCGATTCAATAGAAGATCTTGCTGGTCCGTCCAGTACACTAAGTAGTCTT
TCCATTCTAATAGTGTCATTAAAACTACTTTTCAAATGAATCCTGGACTT
GAAATTCTGTATGAATTCTGGCCATTGCAACGAACTACCATCAAATCGTT
TCAACTCAATAGGTGGCAGGTGTCTTGACTCGCACTCTACTTGGATCACC
CTAGATGCCAACGTATTGTCTACTGGAATCTCAGTCTCTTTATATTCAAT
CAATTCATCAATAAATGCATCACAAGGCTCGACCTGTCTGTGACTTGCCT
TTAACTGTGTCGATGGTTGTTGATGAGACAATGGCTGACTATTTGTAGCT
TTGATGGATGGTTGTTCCAATGGCTGACTGTCTGGTTGCTTCTGATGACA
ACTTTTGGCAGTGGCTGTGTGATGAATCTTGGTTTCAAGAGAGCGTTTCT
TTGGTAAGAGTAAGTGGCGAAAGGATGAAACTGAAGATGCACGAGATGAA
GCATAACGAGTGTGAAGCTCCTTTGATTGATTGTGGTTGATGGGAAAGTG
GTGAGAAATGACTGACTTCCTATCCTCCTCTTTGTTCTCTATCTGGTCTC
TCTCGAGTTTGGCGTTCGACTTGATTATTTGAAGATCGAGTTTAAATTTA
TCTTCTAAAAACTGATGTTTTAGTTTGGCGATCTCACTGGCCTTCTTCAT
GGTAACATCTCTCAGCTTGTCTGACTTTGTTGACGAAGTCTTTCCTGATG
AACTGACTGAACTTTGG Run BLAST on NCBI transcript from alignment at sc0001570:48680..50601+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037096 ID=TCONS_00037096|Name=TCONS_00037096|organism=Clytia hemisphaerica|type=transcript|length=1922bp|location=Sequence derived from alignment at sc0001570:48680..50601+ (Clytia hemisphaerica)
GACGTCTGAATCATGAGGTGTTGGAAATGTAATGTCTTTCAGGTGTTGAA
ATTCTGTTTTCACTTTATTGATGTCGTACCTATTTACTGGTACGTCAAGG
TTCTCAATTACCCAAACGTTGTCGAGTTTCTCTTTGGTTTTGTTGTCGTG
TGATTCAAGATTGAAGCAGACTCTTTTTGATTGCAGACTTGTCTCCTTTG
ATAATACGTTCGACATTTGAAGAGTTTCTTTCTTACCGGATAGGTGTAGA
GCCTCGGCGGTATCAGCACGAATCAAGGTACTATCAGATCCAGAGTCGAG
GACTGCATTGGTTTTGATGCTGTATTTACCATTTGATAATACGACAGGGA
CAATTTGAAGGAAGGTCTGGTTGGTAGTAGAACATTGCATACTTTTTGCT
GATCCAGGAGTATCAGTGGTAGTGGCTGTATCTCTGTGAAGCAAAGTGTG
ATGTTTTTTACCACATTCGTCCTTGGTACATGTAAATTTGGAAGGACACT
CTTTAATGAGATGATTGTTAGAGAAACAGTTGAAACAAAGTCCTTTTTCT
CTCACGATTTTCTGTCGATCGTCTGTAGATGCATTGAGGATCTTTggaca
ttttgatattttgtggNTGTCGATCGTCTGTAGATGCATTGAGGATCTTT
ggacattttgatattttgtggtCTTTGGAGCACAGCCAGCATTTGAATTG
CCTACCGATGAAATTGTTTCGAAATTTTAGGTTTCTACTTTCTTTGTCTT
TCGGTGACTTCGACGTTTTTTCATCACTGATGATCATGGCAATGGGATTG
AACAACTCTTTGACGATACATTCGAGCCAGTTGACAAATACGTAGAGGTC
AGTCAATTTGGGTTGATCGTTACCATATCTATTAAAGAATCGGAACTTGT
GTTGTATTGGAATGATAGATACTGCTTTGGCGACGGTTTCTGGATTGTTG
TAGCTACTGTTGCCAATGGATTCGAACCATGCCATTGCTGTCTTCAACTG
TTGGTAGAAGTTTCTCAATCCTTCATGGTCGGTTATGGTGATTTGAGGTC
TGTCAAACATTTCTTTCAGCTTGAGATGAGCGATGACGTAAGGGTTGCCA
TAATCACGTTTTAAGGCCTTCAGTGCTGTCGCGTAGAAGATAGAATTGGT
TCCGATCGATTCAATAGAAGATCTTGCTGGTCCGTCCAGTACACTAAGTA
GTCTTTCCATTCTAATAGTGTCATTAAAACTACTTTTCAAATGAATCCTG
GACTTGAAATTCTGTATGAATTCTGGCCATTGCAACGAACTACCATCAAA
TCGTTTCAACTCAATAGGTGGCAGGTGTCTTGACTCGCACTCTACTTGGA
TCACCCTAGATGCCAACGTATTGTCTACTGGAATCTCAGTCTCTTTATAT
TCAATCAATTCATCAATAAATGCATCACAAGGCTCGACCTGTCTGTGACT
TGCCTTTAACTGTGTCGATGGTTGTTGATGAGACAATGGCTGACTATTTG
TAGCTTTGATGGATGGTTGTTCCAATGGCTGACTGTCTGGTTGCTTCTGA
TGACAACTTTTGGCAGTGGCTGTGTGATGAATCTTGGTTTCAAGAGAGCG
TTTCTTTGGTAAGAGTAAGTGGCGAAAGGATGAAACTGAAGATGCACGAG
ATGAAGCATAACGAGTGTGAAGCTCCTTTGATTGATTGTGGTTGATGGGA
AAGTGGTGAGAAATGACTGACTTCCTATCCTCCTCTTTGTTCTCTATCTG
GTCTCTCTCGAGTTTGGCGTTCGACTTGATTATTTGAAGATCGAGTTTAA
ATTTATCTTCTAAAAACTGATGTTTTAGTTTGGCGATCTCACTGGCCTTC
TTCATGGTAACATCTCTCAGCTTGTCTGACTTTGTTGACGAAGTCTTTCC
TGATGAACTGACTGAACTTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037096-exon-sc0001570-1491911889:48680..49278 | TCONS_00037096-exon-sc0001570-1491911889:48680..49278 | Clytia hemisphaerica | exon |
| TCONS_00037096-exon-sc0001570-1510915933:48680..49278 | TCONS_00037096-exon-sc0001570-1510915933:48680..49278 | Clytia hemisphaerica | exon |
| TCONS_00037096-exon-sc0001570-1575043694:48680..49278 | TCONS_00037096-exon-sc0001570-1575043694:48680..49278 | Clytia hemisphaerica | exon |
| TCONS_00037096-exon-sc0001570-1491911889:49334..50601 | TCONS_00037096-exon-sc0001570-1491911889:49334..50601 | Clytia hemisphaerica | exon |
| TCONS_00037096-exon-sc0001570-1510915933:49334..50601 | TCONS_00037096-exon-sc0001570-1510915933:49334..50601 | Clytia hemisphaerica | exon |
| TCONS_00037096-exon-sc0001570-1575043694:49334..50601 | TCONS_00037096-exon-sc0001570-1575043694:49334..50601 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001570 | supercontig | sc0001570:48680..50601 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
|
