TCONS_00037095 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037095
Unique NameTCONS_00037095
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length242

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037095 ID=TCONS_00037095|Name=TCONS_00037095|organism=Clytia hemisphaerica|type=transcript|length=242bp
CCTAAAAGTAGGCcgtaaaagaaagaagaagattcTATGGATTACCACAA
TGCAAAATCAATCTTCGAGACAGGGCTGTATGATgagacaatattttcag
taTACATGCACTATATTGTCACACCACCATGGAAAGAGCATGACAAATGC
GTCTTCAAGTGTACCACCGGAGGCTCTTTAATTAGTTACGATAATCTTAG
ATTTAACTCATTAGAATTTGCACCTACATATTATGTGTGGAT
Run BLAST on NCBI

transcript from alignment at sc0001569:49262..49503

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037095 ID=TCONS_00037095|Name=TCONS_00037095|organism=Clytia hemisphaerica|type=transcript|length=242bp|location=Sequence derived from alignment at sc0001569:49262..49503 (Clytia hemisphaerica)
ATCCACACATAATATGTAGGTGCAAATTCTAATGAGTTAAATCTAAGATT
ATCGTAACTAATTAAAGAGCCTCCGGTGGTACACTTGAAGACGCATTTGT
CATGCTCTTTCCATGGTGGTGTGACAATATAGTGCATGTAtactgaaaat
attgtctcATCATACAGCCCTGTCTCGAAGATTGATTTTGCATTGTGGTA
ATCCATAgaatcttcttctttcttttacgGCCTACTTTTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021935XLOC_021935Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037095-exon-sc0001569-1491911889:49262..49503TCONS_00037095-exon-sc0001569-1491911889:49262..49503Clytia hemisphaericaexon
TCONS_00037095-exon-sc0001569-1510915933:49262..49503TCONS_00037095-exon-sc0001569-1510915933:49262..49503Clytia hemisphaericaexon
TCONS_00037095-exon-sc0001569-1575043694:49262..49503TCONS_00037095-exon-sc0001569-1575043694:49262..49503Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001569supercontigsc0001569:49262..49503 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.849349	0	0.964818	1.17457	0	0	0	0.733963	0	0.882426	0.580072	0	0	0	0	0	0	0.476532	0	1.68424	1.23227	0	0	0	2.50377	2.38859	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037095 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top