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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037090 ID=TCONS_00037090|Name=TCONS_00037090|organism=Clytia hemisphaerica|type=transcript|length=633bp
GGGATACTTCGGGATTTGGAGGAGTACAAACGATATCTCGCTACGTGGGG
AGACCACACGTCTATGCTAAGTTCAGGCTACCTACTTTACACCGTTAAAG
TCATTTATTCCAAAGATATATTTTACACAGATTTTGAAATGGAAAATATC
TTTAAGAAGTCTGTCAAGGTCCAGAGCTTAGTAGAAAAACCAGAGATTTA
CATTGTCGGTCAGTGCAAAGATTCAATTGCAGAGAAGCTTTCGTACGTCT
CTAGTAGAATGGAAGATATTGAACAAATGAAAGAACCCTTTTACGTCGAC
GGAAAAAAGATAGAGGATTGCATGAGGTTTTTCATCGgtGATCATCCAGA
ATTGCAATTTGAAGCAGGTAATGCTCAAGGAGGAGATTACCCTTGCATGT
GTGGTTGTTATTCTGGGCGCTTTGGAGACGCTGCATACGTTCTTGGGAAT
GGAAGAATACAGTCTTTGGAGAGTAGACGAGCAAAGatCACGATCGGACG
TCTAGGACAACAAACAAGCTCTATCAGCCCTCATGAAAATATACGAGTTG
ACCCCTTAAGAACTGATTTATTTGATAGGAAGCTGATGAACCAGGTGAAa
ggtatatttttttcaattaaaacttacttctgc Run BLAST on NCBI protein sequence of TCONS_00037090-protein >TCONS_00037090-protein ID=TCONS_00037090-protein|Name=TCONS_00037090-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
GILRDLEEYKRYLATWGDHTSMLSSGYLLYTVKVIYSKDIFYTDFEMENI
FKKSVKVQSLVEKPEIYIVGQCKDSIAEKLSYVSSRMEDIEQMKEPFYVD
GKKIEDCMRFFIGDHPELQFEAGNAQGGDYPCMCGCYSGRFGDAAYVLGN
GRIQSLESRRAKITIGRLGQQTSSISPHENIRVDPLRTDLFDRKLMNQVK
GIFFSIKTYFC Run BLAST on NCBI transcript from alignment at sc0001569:7663..8774+ Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037090 ID=TCONS_00037090|Name=TCONS_00037090|organism=Clytia hemisphaerica|type=transcript|length=1112bp|location=Sequence derived from alignment at sc0001569:7663..8774+ (Clytia hemisphaerica)
GGGATACTTCGGGATTTGGAGGAGTACAAACGATATCTCGCTACGTGGGG
AGACCACACGTCTATGCTAAGTTCAGGCTACCTACTTTACACCGTTAAAG
TCATTTATTCCAAAGATATATTTTACACAGATTTTGAAATGGAAAATATC
TTTAAGAAGTCTGTCAAGGTCCAGAGCTTAGTAGAAAAACCAGAGATTTA
CATTGTCGGTCAGTGCAAAGATTCAATTGCAGAGAAGCTTTCGTACGTCT
CTAGTAGAATGGAAGATATTGAACAAATGAAAGAACCCTTTTACGTCGAC
GGAAAAAAGATAGAGGATTGCATGAGGTTTTTCATCGGTAATTTTTTTGT
AATCGTTTTTGTAGAGGTCTTTTTCGTCATTTTCAATTCAAAGTGATTAA
TTTGACCTCATCtgataataagcataaactggcaaaaagttttcaaagat
ttatcttaatttgaaatattttttttttattaaaggtGATCATCCAGAAT
TGCAATTTGAAGCAGGTAATGCTCAAGGAGGAGATTACCCTTGCATGTGT
GGTTGTTATTCTGGGCGCTTTGGAGACGCTGCATACGTTCTTGGGAATGG
AAGAATACAGTCTTTGGAGAGTAGACGAGCAAAGGTAAGCACTTGGTAAA
AATaactataaaaaaataatattaaaaacTACTAGTGACATAAatctcaa
taaaaaataaagcacccttaaagccattgacctcttacatagttataatg
tatgttgattcagcagattgaaataaatagaatcttttgtattgaataaa
gaaaaatgtggagcaagatttttttcttccttttatttacaaatttgaaa
ggactcttttattaaaattttgctgacaacagtttcagacgagtcgggtg
tataaaacaccgtataattcctttaaTCAGTGAAACCTCAAAGttatgtt
ttacttttttcaaagatCACGATCGGACGTCTAGGACAACAAACAAGCTC
TATCAGCCCTCATGAAAATATACGAGTTGACCCCTTAAGAACTGATTTAT
TTGATAGGAAGCTGATGAACCAGGTGAAaggtatatttttttcaattaaa
acttacttctgc Coding sequence (CDS) from alignment at sc0001569:7663..8774+ >TCONS_00037090 ID=TCONS_00037090|Name=TCONS_00037090|organism=Clytia hemisphaerica|type=CDS|length=1899bp|location=Sequence derived from alignment at sc0001569:7663..8774+ (Clytia hemisphaerica)
GGGATACTTCGGGATTTGGAGGAGTACAAACGATATCTCGCTACGTGGGG
AGACCACACGTCTATGCTAAGTTCAGGCTACCTACTTTACACCGTTAAAG
TCATTTATTCCAAAGATATATTTTACACAGATTTTGAAATGGAAAATATC
TTTAAGAAGTCTGTCAAGGTCCAGAGCTTAGTAGAAAAACCAGAGATTTA
CATTGTCGGTCAGTGCAAAGATTCAATTGCAGAGAAGCTTTCGTACGTCT
CTAGTAGAATGGAAGATATTGAACAAATGAAAGAACCCTTTTACGTCGAC
GGAAAAAAGATAGAGGATTGCATGAGGTTTTTCATCGgtGATCATCCAGA
ATTGCAATTTGAAGCAGGTAATGCTCAAGGAGGAGATTACCCTTGCATGT
GTGGTTGTTATTCTGGGCGCTTTGGAGACGCTGCATACGTTCTTGGGAAT
GGAAGAATACAGTCTTTGGAGAGTAGACGAGCAAAGatCACGATCGGACG
TCTAGGACAACAAACAAGCTCTATCAGCCCTCATGAAAATATACGAGTTG
ACCCCTTAAGAACTGATTTATTTGATAGGAAGCTGATGAACCAGGTGAAa
ggtatatttttttcaattaaaacttacttctgcGGGATACTTCGGGATTT
GGAGGAGTACAAACGATATCTCGCTACGTGGGGAGACCACACGTCTATGC
TAAGTTCAGGCTACCTACTTTACACCGTTAAAGTCATTTATTCCAAAGAT
ATATTTTACACAGATTTTGAAATGGAAAATATCTTTAAGAAGTCTGTCAA
GGTCCAGAGCTTAGTAGAAAAACCAGAGATTTACATTGTCGGTCAGTGCA
AAGATTCAATTGCAGAGAAGCTTTCGTACGTCTCTAGTAGAATGGAAGAT
ATTGAACAAATGAAAGAACCCTTTTACGTCGACGGAAAAAAGATAGAGGA
TTGCATGAGGTTTTTCATCGgtGATCATCCAGAATTGCAATTTGAAGCAG
GTAATGCTCAAGGAGGAGATTACCCTTGCATGTGTGGTTGTTATTCTGGG
CGCTTTGGAGACGCTGCATACGTTCTTGGGAATGGAAGAATACAGTCTTT
GGAGAGTAGACGAGCAAAGatCACGATCGGACGTCTAGGACAACAAACAA
GCTCTATCAGCCCTCATGAAAATATACGAGTTGACCCCTTAAGAACTGAT
TTATTTGATAGGAAGCTGATGAACCAGGTGAAaggtatatttttttcaat
taaaacttacttctgcGGGATACTTCGGGATTTGGAGGAGTACAAACGAT
ATCTCGCTACGTGGGGAGACCACACGTCTATGCTAAGTTCAGGCTACCTA
CTTTACACCGTTAAAGTCATTTATTCCAAAGATATATTTTACACAGATTT
TGAAATGGAAAATATCTTTAAGAAGTCTGTCAAGGTCCAGAGCTTAGTAG
AAAAACCAGAGATTTACATTGTCGGTCAGTGCAAAGATTCAATTGCAGAG
AAGCTTTCGTACGTCTCTAGTAGAATGGAAGATATTGAACAAATGAAAGA
ACCCTTTTACGTCGACGGAAAAAAGATAGAGGATTGCATGAGGTTTTTCA
TCGgtGATCATCCAGAATTGCAATTTGAAGCAGGTAATGCTCAAGGAGGA
GATTACCCTTGCATGTGTGGTTGTTATTCTGGGCGCTTTGGAGACGCTGC
ATACGTTCTTGGGAATGGAAGAATACAGTCTTTGGAGAGTAGACGAGCAA
AGatCACGATCGGACGTCTAGGACAACAAACAAGCTCTATCAGCCCTCAT
GAAAATATACGAGTTGACCCCTTAAGAACTGATTTATTTGATAGGAAGCT
GATGAACCAGGTGAAaggtatatttttttcaattaaaacttacttctgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037090-exon-sc0001569-1491911889:7663..7999 | TCONS_00037090-exon-sc0001569-1491911889:7663..7999 | Clytia hemisphaerica | exon |
| TCONS_00037090-exon-sc0001569-1510915933:7663..7999 | TCONS_00037090-exon-sc0001569-1510915933:7663..7999 | Clytia hemisphaerica | exon |
| TCONS_00037090-exon-sc0001569-1575043694:7663..7999 | TCONS_00037090-exon-sc0001569-1575043694:7663..7999 | Clytia hemisphaerica | exon |
| TCONS_00037090-exon-sc0001569-1491911889:8148..8296 | TCONS_00037090-exon-sc0001569-1491911889:8148..8296 | Clytia hemisphaerica | exon |
| TCONS_00037090-exon-sc0001569-1510915933:8148..8296 | TCONS_00037090-exon-sc0001569-1510915933:8148..8296 | Clytia hemisphaerica | exon |
| TCONS_00037090-exon-sc0001569-1575043694:8148..8296 | TCONS_00037090-exon-sc0001569-1575043694:8148..8296 | Clytia hemisphaerica | exon |
| TCONS_00037090-exon-sc0001569-1491911889:8628..8774 | TCONS_00037090-exon-sc0001569-1491911889:8628..8774 | Clytia hemisphaerica | exon |
| TCONS_00037090-exon-sc0001569-1510915933:8628..8774 | TCONS_00037090-exon-sc0001569-1510915933:8628..8774 | Clytia hemisphaerica | exon |
| TCONS_00037090-exon-sc0001569-1575043694:8628..8774 | TCONS_00037090-exon-sc0001569-1575043694:8628..8774 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001569 | supercontig | sc0001569:7663..8774 + |
Blast
The following BLAST results are available for this feature:
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