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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037085 ID=TCONS_00037085|Name=TCONS_00037085|organism=Clytia hemisphaerica|type=transcript|length=1292bp
aacgaggctggagtttgcaaTCCCCCGTGgtgattttttggtttttgctg
GATTTTAAGAATCTCTGACCCAAGGCCAAAAAAGGAAGTTAGACTTTGAC
TTTTCTTGTAAATTACTCctattataaatgtgttaatggcctaaaattca
aaattataaaTAAGTAGGCTAATAATGTTTCTTTCACCTAATTTAGTATA
AACGAAATATTTGaagtgaaaaatcaaaatgggtaATTCAAACTCAACAG
TTGTTGTTGACAATGGCAATTATTTGATTGCCACTCTAAGTATTGACATT
CATGTAAAAGAAGCATTACTGGAAAGTTGCCGTGATACATCGTTTGTTAA
AGTTCCTTTGCCTGCTGATGGTGTCGACctgttcaactttttcaacgATC
CTCAGAGGAAAAGGAGGCTAGACTCTTTGTTGAAACAAAAATCTATTTAT
CAAGATCAATACGATTTACTCTTACCACAAAATTGTTTAACGGAGTCCAA
AAATTGGGACGTGACTATCATAACTCGTGTTGCTGGGGAATTTCTTTTTC
TACCAAATTCTTCCAAAGCAATTATCAAGGATGCTCAGAAGTCTAGAAAT
GGTATTAAACACGGCAACCCGGAAGAGTTTAAGCAGCAACAGAAATTTGA
TGACACGATGGACGATATTAAAAAGCTGCTGATCAAACTAAACTATGCTA
AAATGAATGATTTTAATAACTTAAGAAACAAGACTGTAGAAATTGACTTG
AAAACTTTTATGAACTTCCACCAGACGCTGATAACAAACATGCAAACTCA
CCTCATTAATGAACAAAATAAAGCAAGTAAAGACATTTTGAAACAAGTTA
TCGATTCTTTCAACGTCAAAAGAGaaCGTCAAAATTTGGAATCTAAGGAG
ATCAGGCTTGAAAGAAACCTCCACAAAGACGTTCAAATcactttgaattt
taaaaacttaaacATTGCTAATATCACTGCTATTGATGTCGGCaaagaaa
tcgatgaaaatacAGAAATCGTATATAAAGGATTACAACAAAACGAATAC
TTGATCACACCATTGCATGATATCCAGTTAGTTCAGATTTTTAAGGAGAT
GGAGTCGGGGTTCGTTCATTCtattaaaatgaaaacattgcaAACTGATG
GCACCAATGAAGAGTTTGTTGTTAATGTCAAAGGAAGAGGTAAGGCttta
aactttatcaaaaagtacgtgctttttatataagaacaaactatataaga
atataaggcttcgatggccaaaatgttaaacaTTATCAGAAC Run BLAST on NCBI protein sequence of TCONS_00037085-protein >TCONS_00037085-protein ID=TCONS_00037085-protein|Name=TCONS_00037085-protein|organism=Clytia hemisphaerica|type=polypeptide|length=334bp
MGNSNSTVVVDNGNYLIATLSIDIHVKEALLESCRDTSFVKVPLPADGVD
LFNFFNDPQRKRRLDSLLKQKSIYQDQYDLLLPQNCLTESKNWDVTIITR
VAGEFLFLPNSSKAIIKDAQKSRNGIKHGNPEEFKQQQKFDDTMDDIKKL
LIKLNYAKMNDFNNLRNKTVEIDLKTFMNFHQTLITNMQTHLINEQNKAS
KDILKQVIDSFNVKRERQNLESKEIRLERNLHKDVQITLNFKNLNIANIT
AIDVGKEIDENTEIVYKGLQQNEYLITPLHDIQLVQIFKEMESGFVHSIK
MKTLQTDGTNEEFVVNVKGRGKALNFIKKYVLFI Run BLAST on NCBI transcript from alignment at sc0001568:41258..43873+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037085 ID=TCONS_00037085|Name=TCONS_00037085|organism=Clytia hemisphaerica|type=transcript|length=2616bp|location=Sequence derived from alignment at sc0001568:41258..43873+ (Clytia hemisphaerica)
aacgaggctggagtttgcaaTCCCCCGTGgtgattttttggtttttgctg
GATTTTAAGAATCTCTGACCCAAGGCCAAAAAAGGAAGTTAGACTTTGAC
TTTTCTTGTAAATTACTCctattataaatgtgttaatggcctaaaattca
aaattataaaTAAGTAGGCTAATAATGTTTCTTTCACCTAATTTAGTATA
AACGAAATATTTGaagtgaaaaatcaaaatgggtaATTCAAACTCAACAG
TTGTTGTTGACAATGGCAATTATTTGATTGCCACTCTAAGTATTGACATT
CATGTAAAAGAAGCATTACTGGAAAGTTGCCGTGATACATCGTTTGTTAA
AGTTCCTTTGCCTGCTGATGGTGTCGACctgttcaactttttcaacgATC
CTCAGAGGAAAAGGAGGCTAGACTCTTTGTTGAAACAAAAATCTATTTAT
CAAGATCAATACGATTTACTCTTACCACAAAATTGTTTAACGGAGTCCAA
AAATTGGGACGTGACTATCATAACTCGTGTTGCTGGGGAATTTCTTTTTC
TACCAAATTCTTCCAAAGCAATTATCAAGGATGCTCAGAAGTCTAGAAAT
GGTATTAAACACGGCAACCCGGAAGAGTTTAAGCAGCAACAGAAATTTGA
TGACACGATGGACGATATTAAAAAGCTGCTGATCAAACTAAACTATGCTA
AAATGAATGATTTTAATAACTTAAGAAACAAGACTGTAGAAATTGACTTG
AAAACTTTTATGAACTTCCACCAGACGCTGATAACAAACATGCAAACTCA
CCTCATTAATGAACAAAATAAAGCAAGTAAAGACATTTTGAAACAAGTTA
TCGATTCTTTCAACGTCAAAAGAGGtgaatattttctattttcttctaTA
TCTCTACTTTCTCTTGATTATACAGGGAAACTTGACCCCGGTTTAATGGA
ACTCAATCCCTTTCATTGCCGTTAGTAAACCTCTTTAGATAAGTCAACCT
ctgaattttcatcaaatattatttttataccTTACCTTAATCTACTGAAA
AAATGACCCTTTTTGGCATAAATATTTATCACTTGGAATCTTAATATTAC
ATTCACCTGTTAAAACTTtacgtgaaattttttttgggggtGATTCCCGC
TTTCTCCTTGTATCAAAGACCGGATGAAGTAAATTTATTCCGTtatatat
ctttttcatttagaaCGTCAAAATTTGGAATCTAAGGAGATCAGGTAACT
TTTCGCCAGAAACTCGCCGGTAAAAAAGTGTCAAAGAGATTACTTAgcta
agcttttttcacatgcacctAAAATTTCACTTTAGACCTTACggaaaatc
gttcgtaaggctgtcttttgggaatttccccgacattatgtagagttttt
AAGGGTCCTAagtgacttttccttccgttcaaaacgTAAGCTTAggaaaa
tttcctacccttcaaggtcttaagtaaaattttacttacatgtgaaaaaa
gctttacttAAGCTTTTTTTACTGACAAATATTTGAGGTCGAACATAAAT
TTTTGCCGACTGACGTTTGTGCCCGGGGGAGGGgagcactcaaggtaaat
gacctaccagacgttcggcccttaagggtaggtttttcatagttcagcta
gtgcactgtaagggtaggaaattacaaaactgcactNAAAATATATgtaa
aaatatcatgaaaatgGATGTATCTTCATATGCTAACatcgggggggggc
actcaaggtaaatgacctaccagacgttcggcccttaagggtaggttttt
catagttcagctagtgcactgcaagggtaggaaattacaaaattgcaCTA
AACTGCAccgtaagggtaggaaattgtgataaaaggccaattttttggta
aaattggcacaaaattggtcaattttggaggaaaaattccacattttctt
gggaAATtacgagaaattttgaaaaagtgcactgtaagggtatgattttt
catggaaattcactgcactgtaagggtccgattttagaagccaaattttg
cgccaaacgtatggtcgttttcagatccaGTCCCCCCCCCCTGGGCGTTT
GTGAATAAGGGCTATCAGAGAGACAATGCGGCCTTGACAGTTTGTATTAT
ATGTTGGTTTTATAATGTAGTTTAATGCTTCGGTTAAGTTTTCAGTTGAT
TTTTTAAATGGATGAATTCTAATTTGCAGGCTTGAAAGAAACCTCCACAA
AGACGTTCAAATcactttgaattttaaaaacttaaacATTGCTAATATCA
CTGCTATTGATGTCGGCaaagaaatcgatgaaaatacAGAAATCGTATAT
AAAGGATTACAACAAAACGAATACTTGATCACACCATTGCATGATATCCA
GTTAGTTCAGATTTTTAAGGAGATGGAGTCGGGGTTCGTTCATTCtatta
aaatgaaaacattgcaAACTGATGGCACCAATGAAGAGTTTGTTGTTAAT
GTCAAAGGAAGAGGTAAGGCtttaaactttatcaaaaagtacgtgctttt
tatataagaacaaactatataagaatataaggcttcgatggccaaaatgt
taaacaTTATCAGAAC Coding sequence (CDS) from alignment at sc0001568:41258..43873+ >TCONS_00037085 ID=TCONS_00037085|Name=TCONS_00037085|organism=Clytia hemisphaerica|type=CDS|length=3015bp|location=Sequence derived from alignment at sc0001568:41258..43873+ (Clytia hemisphaerica)
atgggtaATTCAAACTCAACAGTTGTTGTTGACAATGGCAATTATTTGAT
TGCCACTCTAAGTATTGACATTCATGTAAAAGAAGCATTACTGGAAAGTT
GCCGTGATACATCGTTTGTTAAAGTTCCTTTGCCTGCTGATGGTGTCGAC
ctgttcaactttttcaacgATCCTCAGAGGAAAAGGAGGCTAGACTCTTT
GTTGAAACAAAAATCTATTTATCAAGATCAATACGATTTACTCTTACCAC
AAAATTGTTTAACGGAGTCCAAAAATTGGGACGTGACTATCATAACTCGT
GTTGCTGGGGAATTTCTTTTTCTACCAAATTCTTCCAAAGCAATTATCAA
GGATGCTCAGAAGTCTAGAAATGGTATTAAACACGGCAACCCGGAAGAGT
TTAAGCAGCAACAGAAATTTGATGACACGATGGACGATATTAAAAAGCTG
CTGATCAAACTAAACTATGCTAAAATGAATGATTTTAATAACTTAAGAAA
CAAGACTGTAGAAATTGACTTGAAAACTTTTATGAACTTCCACCAGACGC
TGATAACAAACATGCAAACTCACCTCATTAATGAACAAAATAAAGCAAGT
AAAGACATTTTGAAACAAGTTATCGATTCTTTCAACGTCAAAAGAGaaCG
TCAAAATTTGGAATCTAAGGAGATCAGGCTTGAAAGAAACCTCCACAAAG
ACGTTCAAATcactttgaattttaaaaacttaaacATTGCTAATATCACT
GCTATTGATGTCGGCaaagaaatcgatgaaaatacAGAAATCGTATATAA
AGGATTACAACAAAACGAATACTTGATCACACCATTGCATGATATCCAGT
TAGTTCAGATTTTTAAGGAGATGGAGTCGGGGTTCGTTCATTCtattaaa
atgaaaacattgcaAACTGATGGCACCAATGAAGAGTTTGTTGTTAATGT
CAAAGGAAGAGGTAAGGCtttaaactttatcaaaaagtacgtgcttttta
tataaatgggtaATTCAAACTCAACAGTTGTTGTTGACAATGGCAATTAT
TTGATTGCCACTCTAAGTATTGACATTCATGTAAAAGAAGCATTACTGGA
AAGTTGCCGTGATACATCGTTTGTTAAAGTTCCTTTGCCTGCTGATGGTG
TCGACctgttcaactttttcaacgATCCTCAGAGGAAAAGGAGGCTAGAC
TCTTTGTTGAAACAAAAATCTATTTATCAAGATCAATACGATTTACTCTT
ACCACAAAATTGTTTAACGGAGTCCAAAAATTGGGACGTGACTATCATAA
CTCGTGTTGCTGGGGAATTTCTTTTTCTACCAAATTCTTCCAAAGCAATT
ATCAAGGATGCTCAGAAGTCTAGAAATGGTATTAAACACGGCAACCCGGA
AGAGTTTAAGCAGCAACAGAAATTTGATGACACGATGGACGATATTAAAA
AGCTGCTGATCAAACTAAACTATGCTAAAATGAATGATTTTAATAACTTA
AGAAACAAGACTGTAGAAATTGACTTGAAAACTTTTATGAACTTCCACCA
GACGCTGATAACAAACATGCAAACTCACCTCATTAATGAACAAAATAAAG
CAAGTAAAGACATTTTGAAACAAGTTATCGATTCTTTCAACGTCAAAAGA
GaaCGTCAAAATTTGGAATCTAAGGAGATCAGGCTTGAAAGAAACCTCCA
CAAAGACGTTCAAATcactttgaattttaaaaacttaaacATTGCTAATA
TCACTGCTATTGATGTCGGCaaagaaatcgatgaaaatacAGAAATCGTA
TATAAAGGATTACAACAAAACGAATACTTGATCACACCATTGCATGATAT
CCAGTTAGTTCAGATTTTTAAGGAGATGGAGTCGGGGTTCGTTCATTCta
ttaaaatgaaaacattgcaAACTGATGGCACCAATGAAGAGTTTGTTGTT
AATGTCAAAGGAAGAGGTAAGGCtttaaactttatcaaaaagtacgtgct
ttttatataaatgggtaATTCAAACTCAACAGTTGTTGTTGACAATGGCA
ATTATTTGATTGCCACTCTAAGTATTGACATTCATGTAAAAGAAGCATTA
CTGGAAAGTTGCCGTGATACATCGTTTGTTAAAGTTCCTTTGCCTGCTGA
TGGTGTCGACctgttcaactttttcaacgATCCTCAGAGGAAAAGGAGGC
TAGACTCTTTGTTGAAACAAAAATCTATTTATCAAGATCAATACGATTTA
CTCTTACCACAAAATTGTTTAACGGAGTCCAAAAATTGGGACGTGACTAT
CATAACTCGTGTTGCTGGGGAATTTCTTTTTCTACCAAATTCTTCCAAAG
CAATTATCAAGGATGCTCAGAAGTCTAGAAATGGTATTAAACACGGCAAC
CCGGAAGAGTTTAAGCAGCAACAGAAATTTGATGACACGATGGACGATAT
TAAAAAGCTGCTGATCAAACTAAACTATGCTAAAATGAATGATTTTAATA
ACTTAAGAAACAAGACTGTAGAAATTGACTTGAAAACTTTTATGAACTTC
CACCAGACGCTGATAACAAACATGCAAACTCACCTCATTAATGAACAAAA
TAAAGCAAGTAAAGACATTTTGAAACAAGTTATCGATTCTTTCAACGTCA
AAAGAGaaCGTCAAAATTTGGAATCTAAGGAGATCAGGCTTGAAAGAAAC
CTCCACAAAGACGTTCAAATcactttgaattttaaaaacttaaacATTGC
TAATATCACTGCTATTGATGTCGGCaaagaaatcgatgaaaatacAGAAA
TCGTATATAAAGGATTACAACAAAACGAATACTTGATCACACCATTGCAT
GATATCCAGTTAGTTCAGATTTTTAAGGAGATGGAGTCGGGGTTCGTTCA
TTCtattaaaatgaaaacattgcaAACTGATGGCACCAATGAAGAGTTTG
TTGTTAATGTCAAAGGAAGAGGTAAGGCtttaaactttatcaaaaagtac
gtgctttttatataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037085-exon-sc0001568-1491911889:41258..42131 | TCONS_00037085-exon-sc0001568-1491911889:41258..42131 | Clytia hemisphaerica | exon |
| TCONS_00037085-exon-sc0001568-1510915933:41258..42131 | TCONS_00037085-exon-sc0001568-1510915933:41258..42131 | Clytia hemisphaerica | exon |
| TCONS_00037085-exon-sc0001568-1575043694:41258..42131 | TCONS_00037085-exon-sc0001568-1575043694:41258..42131 | Clytia hemisphaerica | exon |
| TCONS_00037085-exon-sc0001568-1491911889:42471..42501 | TCONS_00037085-exon-sc0001568-1491911889:42471..42501 | Clytia hemisphaerica | exon |
| TCONS_00037085-exon-sc0001568-1510915933:42471..42501 | TCONS_00037085-exon-sc0001568-1510915933:42471..42501 | Clytia hemisphaerica | exon |
| TCONS_00037085-exon-sc0001568-1575043694:42471..42501 | TCONS_00037085-exon-sc0001568-1575043694:42471..42501 | Clytia hemisphaerica | exon |
| TCONS_00037085-exon-sc0001568-1491911889:43487..43873 | TCONS_00037085-exon-sc0001568-1491911889:43487..43873 | Clytia hemisphaerica | exon |
| TCONS_00037085-exon-sc0001568-1510915933:43487..43873 | TCONS_00037085-exon-sc0001568-1510915933:43487..43873 | Clytia hemisphaerica | exon |
| TCONS_00037085-exon-sc0001568-1575043694:43487..43873 | TCONS_00037085-exon-sc0001568-1575043694:43487..43873 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001568 | supercontig | sc0001568:41258..43873 + |
Blast
The following BLAST results are available for this feature:
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