TCONS_00037061 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037061
Unique NameTCONS_00037061
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length536

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037061 ID=TCONS_00037061|Name=TCONS_00037061|organism=Clytia hemisphaerica|type=transcript|length=536bp
aataaaggtaTTATATTAATTCTGTGAAAGTTTGAGAAAGTTTCACGCAT
TCAAAAGAGAGTTAGAAGATATTTCAGGGACCTAtctatttttaaattgt
ttgaaaattgacgtcaagtgaaaatattttcagaacaAGGGAGAAACTAA
ACAATaccatgaaaattttttttgctagctCGAGCGGTCTTGTTGAACGC
GAGAGAATTGCAATTGAAGGTCTTCTTTTCAATAGATGTCGTTCCATTGC
GCTCGAAAAAGTAAACCGGCGTTTTTCTTTCTGAAACTTTGACCTTCAGT
CAAAAGCAGTTTTACTTGCGTAAAGATGGTTTTTTCCAACGAAGATAAAG
CTGTCGTAAAGAATGATTATATCGAAAAAAGCTGGTCAGAGTACAGGATT
TGTAAAGAGCATCCCATGAAGAAGTGGTATAAAGGTTCTGTGCAAAATCT
CATTAATCGATTCAAAAAAAGCGGGACCATGGACAGAAAACCCGGCTCCG
GCCGCCCAATAACTGTAACAACCGCAGAAAACGAAG
Run BLAST on NCBI

transcript from alignment at sc0001563:49781..50316

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037061 ID=TCONS_00037061|Name=TCONS_00037061|organism=Clytia hemisphaerica|type=transcript|length=536bp|location=Sequence derived from alignment at sc0001563:49781..50316 (Clytia hemisphaerica)
CTTCGTTTTCTGCGGTTGTTACAGTTATTGGGCGGCCGGAGCCGGGTTTT
CTGTCCATGGTCCCGCTTTTTTTGAATCGATTAATGAGATTTTGCACAGA
ACCTTTATACCACTTCTTCATGGGATGCTCTTTACAAATCCTGTACTCTG
ACCAGCTTTTTTCGATATAATCATTCTTTACGACAGCTTTATCTTCGTTG
GAAAAAACCATCTTTACGCAAGTAAAACTGCTTTTGACTGAAGGTCAAAG
TTTCAGAAAGAAAAACGCCGGTTTACTTTTTCGAGCGCAATGGAACGACA
TCTATTGAAAAGAAGACCTTCAATTGCAATTCTCTCGCGTTCAACAAGAC
CGCTCGagctagcaaaaaaaattttcatggtATTGTTTAGTTTCTCCCTt
gttctgaaaatattttcacttgacgtcaattttcaaacaatttaaaaata
gaTAGGTCCCTGAAATATCTTCTAACTCTCTTTTGAATGCGTGAAACTTT
CTCAAACTTTCACAGAATTAATATAAtacctttatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021908XLOC_021908Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037061-exon-sc0001563-1491911889:49781..50316TCONS_00037061-exon-sc0001563-1491911889:49781..50316Clytia hemisphaericaexon
TCONS_00037061-exon-sc0001563-1510915933:49781..50316TCONS_00037061-exon-sc0001563-1510915933:49781..50316Clytia hemisphaericaexon
TCONS_00037061-exon-sc0001563-1575043694:49781..50316TCONS_00037061-exon-sc0001563-1575043694:49781..50316Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001563supercontigsc0001563:49781..50316 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.510175	0.185677	1.04688	0.617018	0.796633	0.119365	1.05697	0.449338	0.267341	0.132906	0.266802	0.360561	0.387883	0.688397	0.599011	0.16937	0.374183	0.404383	0.452357	0.456238	0.495296	0.61221	0.216515	0.487156	0	0	0.591965	0.6973	0.677013	1.23042
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037061 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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