TCONS_00037051 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037051
Unique NameTCONS_00037051
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length434

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037051 ID=TCONS_00037051|Name=TCONS_00037051|organism=Clytia hemisphaerica|type=transcript|length=434bp
ttattgattttatttgttATATTACTTATTTCACAATTTAACTTACCTAT
TCCCTTGGTGCTCGGTGAGCCCCAGGAGGTTATGCAATATTGTAAATGTG
GATTAATAAATGAATAATATAATGAAGTTATATAAGACGGTGAAACTAAA
TGACTCAACTTACGTATGAGGCCTGAGCCTTGTTTGATCTTAGTTTTGAC
ATGATCGATGTGAGCTTTCCAGTCCAATTTTTCATCGATAAATACACCTA
AATACTTTGCAAAGCTAGTTCTCATTACCTGATTGTTTGATATTGTAATA
GTGAATTTTCCAACCTGttttttacctgaaaaaataataaaacaagattt
tttaatatttagggATAGCTTGTTGTTGGTCAGCCAGGTTTGAACAAGCT
TTAACTCTTGGTTTACTAGTTGCTCAAGGATAAC
Run BLAST on NCBI

protein sequence of TCONS_00037051-protein

>TCONS_00037051-protein ID=TCONS_00037051-protein|Name=TCONS_00037051-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
VILEQLVNQELKLVQTWLTNNKLSLNIKKSCFIIFSGKKQVGKFTITISN
NQVMRTSFAKYLGVFIDEKLDWKAHIDHVKTKIKQGSGLIRKLSHLVSPS
YITSLYYSFINPHLQYCITSWGSPSTKGIGKLNCEISNITNKIN
Run BLAST on NCBI

transcript from alignment at sc0001562:29378..29811

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037051 ID=TCONS_00037051|Name=TCONS_00037051|organism=Clytia hemisphaerica|type=transcript|length=434bp|location=Sequence derived from alignment at sc0001562:29378..29811 (Clytia hemisphaerica)
GTTATCCTTGAGCAACTAGTAAACCAAGAGTTAAAGCTTGTTCAAACCTG
GCTGACCAACAACAAGCTATccctaaatattaaaaaatcttgttttatta
ttttttcaggtaaaaaaCAGGTTGGAAAATTCACTATTACAATATCAAAC
AATCAGGTAATGAGAACTAGCTTTGCAAAGTATTTAGGTGTATTTATCGA
TGAAAAATTGGACTGGAAAGCTCACATCGATCATGTCAAAACTAAGATCA
AACAAGGCTCAGGCCTCATACGTAAGTTGAGTCATTTAGTTTCACCGTCT
TATATAACTTCATTATATTATTCATTTATTAATCCACATTTACAATATTG
CATAACCTCCTGGGGCTCACCGAGCACCAAGGGAATAGGTAAGTTAAATT
GTGAAATAAGTAATATaacaaataaaatcaataa

Coding sequence (CDS) from alignment at sc0001562:29378..29811

>TCONS_00037051 ID=TCONS_00037051|Name=TCONS_00037051|organism=Clytia hemisphaerica|type=CDS|length=432bp|location=Sequence derived from alignment at sc0001562:29378..29811 (Clytia hemisphaerica)
GTTATCCTTGAGCAACTAGTAAACCAAGAGTTAAAGCTTGTTCAAACCTG
GCTGACCAACAACAAGCTATccctaaatattaaaaaatcttgttttatta
ttttttcaggtaaaaaaCAGGTTGGAAAATTCACTATTACAATATCAAAC
AATCAGGTAATGAGAACTAGCTTTGCAAAGTATTTAGGTGTATTTATCGA
TGAAAAATTGGACTGGAAAGCTCACATCGATCATGTCAAAACTAAGATCA
AACAAGGCTCAGGCCTCATACGTAAGTTGAGTCATTTAGTTTCACCGTCT
TATATAACTTCATTATATTATTCATTTATTAATCCACATTTACAATATTG
CATAACCTCCTGGGGCTCACCGAGCACCAAGGGAATAGGTAAGTTAAATT
GTGAAATAAGTAATATaacaaataaaatcaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021899XLOC_021899Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037051-exon-sc0001562-1491911889:29378..29811TCONS_00037051-exon-sc0001562-1491911889:29378..29811Clytia hemisphaericaexon
TCONS_00037051-exon-sc0001562-1510915933:29378..29811TCONS_00037051-exon-sc0001562-1510915933:29378..29811Clytia hemisphaericaexon
TCONS_00037051-exon-sc0001562-1575043694:29378..29811TCONS_00037051-exon-sc0001562-1575043694:29378..29811Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037051-proteinTCONS_00037051-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001562supercontigsc0001562:29378..29811 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.57679	1.23009	0.357064	0.698663	1.70111	0.67212	0.405442	1.13871	3.05608	0.822923	1.917	1.36517	2.72655	2.28702	2.14885	0.960851	1.65716	1.94119	1.34093	2.28018	2.8966	2.00775	0.723166	0.986194	1.35434	1.81308	1.72967	1.84595	1.05007	1.24816
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037051 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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