TCONS_00037050 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037050
Unique NameTCONS_00037050
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length672

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037050 ID=TCONS_00037050|Name=TCONS_00037050|organism=Clytia hemisphaerica|type=transcript|length=672bp
GGGAGTTGTTCAAGTGGCTCACGTGTAAAGACACTACAGAATTGGCTCTG
GAGTATGTTGGATTTACTTTTGTCATCATATTTGATCGAATTTTCATTAT
TAGGGTTTTCGAGGAGAGAATGTACTCCTGTTCGTGCTTTCAGATTGCTG
CGTACATATTTCCAGAatctttttggatttgtttttgattgttcgCTGAT
CTTTTTTTCGAACTCTCTCTTGGAGCGAGTCAGGGCACTATTAGCGGCGT
TGCGCCACCTTACGTACTCCCTTCTACGTCTCTCAGTGTCGTCATTTTGA
AGTGAGATGATCCATTTTCTATGCGCCTTACGTTTCTCTTTAATTATCTG
ACAAATTCTTGGATCTAATGGATGCTTCCCTTTCCTTCTTTGATTTGACA
GGTTGTTCTTATTGTGGGAAAGTGGCACATAGAGGTTTCGGAGCTCGATC
ATTTGTTTTAGGAATAGGTCCCAACTCTCATTCACATCTAATTCAATCGA
ATTTTGGATGAATTCGATAGACCAATTGATATGGCTTAGATGAGATCTCA
TAAGCTGGTAGTTGGCTTTGCTGTATTGATATCTATCAAGCTCATTTTTA
ATTGTGAAATAGCCATAGAATTTAAAGGAGAGGACACTGTGATCACTGAG
ATGGAGTGGGGCAAGgtatttt
Run BLAST on NCBI

protein sequence of TCONS_00037050-protein

>TCONS_00037050-protein ID=TCONS_00037050-protein|Name=TCONS_00037050-protein|organism=Clytia hemisphaerica|type=polypeptide|length=223bp
KYLAPLHLSDHSVLSFKFYGYFTIKNELDRYQYSKANYQLMRSHLSHINW
SIEFIQNSIELDVNESWDLFLKQMIELRNLYVPLSHNKNNLSNQRRKGKH
PLDPRICQIIKEKRKAHRKWIISLQNDDTERRRREYVRWRNAANSALTRS
KREFEKKISEQSKTNPKRFWKYVRSNLKARTGVHSLLENPNNENSIKYDD
KSKSNILQSQFCSVFTREPLEQL
Run BLAST on NCBI

transcript from alignment at sc0001562:3734..4405

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037050 ID=TCONS_00037050|Name=TCONS_00037050|organism=Clytia hemisphaerica|type=transcript|length=672bp|location=Sequence derived from alignment at sc0001562:3734..4405 (Clytia hemisphaerica)
aaaatacCTTGCCCCACTCCATCTCAGTGATCACAGTGTCCTCTCCTTTA
AATTCTATGGCTATTTCACAATTAAAAATGAGCTTGATAGATATCAATAC
AGCAAAGCCAACTACCAGCTTATGAGATCTCATCTAAGCCATATCAATTG
GTCTATCGAATTCATCCAAAATTCGATTGAATTAGATGTGAATGAGAGTT
GGGACCTATTCCTAAAACAAATGATCGAGCTCCGAAACCTCTATGTGCCA
CTTTCCCACAATAAGAACAACCTGTCAAATCAAAGAAGGAAAGGGAAGCA
TCCATTAGATCCAAGAATTTGTCAGATAATTAAAGAGAAACGTAAGGCGC
ATAGAAAATGGATCATCTCACTTCAAAATGACGACACTGAGAGACGTAGA
AGGGAGTACGTAAGGTGGCGCAACGCCGCTAATAGTGCCCTGACTCGCTC
CAAGAGAGAGTTCGAAAAAAAGATCAGcgaacaatcaaaaacaaatccaa
aaagatTCTGGAAATATGTACGCAGCAATCTGAAAGCACGAACAGGAGTA
CATTCTCTCCTCGAAAACCCTAATAATGAAAATTCGATCAAATATGATGA
CAAAAGTAAATCCAACATACTCCAGAGCCAATTCTGTAGTGTCTTTACAC
GTGAGCCACTTGAACAACTCCC

Coding sequence (CDS) from alignment at sc0001562:3734..4405

>TCONS_00037050 ID=TCONS_00037050|Name=TCONS_00037050|organism=Clytia hemisphaerica|type=CDS|length=669bp|location=Sequence derived from alignment at sc0001562:3734..4405 (Clytia hemisphaerica)
aaatacCTTGCCCCACTCCATCTCAGTGATCACAGTGTCCTCTCCTTTAA
ATTCTATGGCTATTTCACAATTAAAAATGAGCTTGATAGATATCAATACA
GCAAAGCCAACTACCAGCTTATGAGATCTCATCTAAGCCATATCAATTGG
TCTATCGAATTCATCCAAAATTCGATTGAATTAGATGTGAATGAGAGTTG
GGACCTATTCCTAAAACAAATGATCGAGCTCCGAAACCTCTATGTGCCAC
TTTCCCACAATAAGAACAACCTGTCAAATCAAAGAAGGAAAGGGAAGCAT
CCATTAGATCCAAGAATTTGTCAGATAATTAAAGAGAAACGTAAGGCGCA
TAGAAAATGGATCATCTCACTTCAAAATGACGACACTGAGAGACGTAGAA
GGGAGTACGTAAGGTGGCGCAACGCCGCTAATAGTGCCCTGACTCGCTCC
AAGAGAGAGTTCGAAAAAAAGATCAGcgaacaatcaaaaacaaatccaaa
aagatTCTGGAAATATGTACGCAGCAATCTGAAAGCACGAACAGGAGTAC
ATTCTCTCCTCGAAAACCCTAATAATGAAAATTCGATCAAATATGATGAC
AAAAGTAAATCCAACATACTCCAGAGCCAATTCTGTAGTGTCTTTACACG
TGAGCCACTTGAACAACTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021898XLOC_021898Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037050-proteinTCONS_00037050-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037050-exon-sc0001562-1491911889:3734..4405TCONS_00037050-exon-sc0001562-1491911889:3734..4405Clytia hemisphaericaexon
TCONS_00037050-exon-sc0001562-1510915933:3734..4405TCONS_00037050-exon-sc0001562-1510915933:3734..4405Clytia hemisphaericaexon
TCONS_00037050-exon-sc0001562-1575043694:3734..4405TCONS_00037050-exon-sc0001562-1575043694:3734..4405Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001562supercontigsc0001562:3734..4405 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.50639	1.86127	2.20704	3.17667	0.694259	0.984695	0.63571	0.506373	0.833709	0.833803	0.683879	1.26183	1.47823	1.1341	1.47813	0.260898	0.59491	1.0357	0.386338	2.32215	0.336203	1.06777	0.331318	0.732746	1.34136	1.92361	53.9478	56.294	8.09992	6.74572
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037050 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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