|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037048 ID=TCONS_00037048|Name=TCONS_00037048|organism=Clytia hemisphaerica|type=transcript|length=1309bp
CTCAGGATTACATTACTTGGTATAGATTTAAATGTCTGTACAGCGTCAAC
CACCAAAGGtacattaaaaatatcaatggTACATAATTCATTTCTTGTTT
AAATGTTAGTTGATTGTAAGGAATTTTCTTACCTTGTCTTTCGAGAAATG
CCATTGTGAAATAGGTCTGCATTTCTTTCTGCATTATATGTATGAAAAAA
CTGGCTCTTGAGCATCTAATcttgataatttgataattGATATAAAGTGc
tgacaaaaattctttttacagTCCTCCATGTAAATCAACAATAATGGATA
AATCAATTTGCACACCTTGTTTGAAAGGTTCGAAAATACCAAGTAGACAT
CTGctgctgaatttgaaatttcaatcaagttcattatcaaaagaaattat
taGCACTGGTTATAAGGTGCTTTATGAAGACACTTTAGGATTGATTGATT
GTTTTCCTTCGACAAGTTGTGCTGTTGTGATtgcatttgaaaatttgatt
gtCACTGAACTTGAATTAAAATCGAAATTACGTCAACTGATGAAATATTC
CAAGAAGAAGGTTGTTTTATTTGAGATGTCATCAACTACTGAACAATATC
TGAACACTTTGCAACAAAAGGTGATACGTGAAGATTGGGAACTGTCAATC
CTTTTATTCACAAAACTGAACGAAGTAGTGCTTTTTTTAACTCAGTTAAG
TCAACACCAAGACAATAGCTCCCTGTTTGGAAAACCTTCAGATAGACCTT
CTCATAACGAATCTCTGCTTCAGATTGTGACTTCATTTCCTGGCATCGGA
GAAAAGAAAGCTAAAGAATTGTTGAAAAGATTTggaactttaaaaaatat
tttggaagcTCCTACGAAAGATTTAGCAGAAGTTGTTGGCGAGaaaactt
ctttttctttgaaaaatatctaaaattatGAAAGACTGTTGTACGTTTTT
GTCTGatctttgatgaagaactttttGCATGTTATTTTCTTCATTTGTCT
TTAGTGAGAATCAAATTATTAAATATCAAAATCACATTGGTTGATGAAAA
TGTATTTACTGGAAGCATCGCCAGACGAAACAACAGAAGTCTATTGCACC
TGTTCTGCGGCCACTTTGATCCATTACGAGCCAGTAGGACGTTTTTACGA
GGCAGCCGTCAAACGTTTGCGTAATGAAAAATCCATATCattggaagaag
aagaaggggaaaatgaaaaagaagccATTGAGAAAGATGAAGAATGCAAG
GAACTGACGTTCGATGAAAAACAATACTTGTTGACGCTCGATTCTGCTGA
GTGGAAGGT Run BLAST on NCBI protein sequence of TCONS_00037048-protein >TCONS_00037048-protein ID=TCONS_00037048-protein|Name=TCONS_00037048-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
MDKSICTPCLKGSKIPSRHLLLNLKFQSSSLSKEIISTGYKVLYEDTLGL
IDCFPSTSCAVVIAFENLIVTELELKSKLRQLMKYSKKKVVLFEMSSTTE
QYLNTLQQKVIREDWELSILLFTKLNEVVLFLTQLSQHQDNSSLFGKPSD
RPSHNESLLQIVTSFPGIGEKKAKELLKRFGTLKNILEAPTKDLAEVVGE
KTSFSLKNI Run BLAST on NCBI transcript from alignment at sc0001562:6930..8642- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037048 ID=TCONS_00037048|Name=TCONS_00037048|organism=Clytia hemisphaerica|type=transcript|length=1713bp|location=Sequence derived from alignment at sc0001562:6930..8642- (Clytia hemisphaerica)
CTCAGGATTACATTACTTGGTATAGATTTAAATGTCTGTACAGCGTCAAC
CACCAAAGGTACATTAAAAATATCAATGGTACATAATTCATTTCTTGTTT
AAATGTTAGTTGATTGTAAGGAATTTTCTTACCTTGTCTTTCGAGAAATG
CCATTGTGAAATAGGTCTGCATTTCTTTCTGCATTATATGTATGAAAAAA
CTGGCTCTTGAGCATCTAATCTTGATAATTTGATAATTGATATAAAGTGC
TGACAAAAATTCTTTTTACAGTCCTCCATGTAAATCAACAATAATGGATA
AATCAATTTGCACACCTTGTTTGAAAGGTTCGAAAATACCAAGTAGACAT
CTGCTGCTGAATTTGAAATTTCAATCAAGTTCATTATCAAAAGAAATTAT
TAGCACTGGTTATAAGGTGCTTTATGAAGACACTTTAGGATTGATTGATT
GTTTTCCTTCGACAAGTTGTGCTGTTGTGATTGCATTTGAAAATTTGATT
GTCACTGAACTTGAATTAAAATCGAAATTACGTCAACTGATGAAATATTC
CAAGAAGAAGGTTGTTTTATTTGAGATGTCATCAACTACTGAACAATATC
TGAACACTTTGCAACAAAAGGTGATACGTGAAGATTGGGAACTGTCAATC
CTTTTATTCACAAAACTGAACGAAGTAGTGCTTTTTTTAACTCAGTTAAG
TCAACACCAAGACAATAGCTCCCTGTTTGGAAAACCTTCAGATAGACCTT
CTCATAACGAATCTCTGCTTCAGATTGTGACTTCATTTCCTGGCATCGGA
GAAAAGAAAGCTAAAGAATTGTTGAAAAGATTTGGAACTTTAAAAAATAT
TTTGGAAGCTCCTACGAAAGATTTAGCAGAAGTTGTTGGCGAGAAAACTT
CTTTTTCTTTGAAAAATATCTAAAATTATGAAAGACTGTTGTACGTTTTT
GTCTGATCTTTGATGAAGAACTTTTTGCATGTTATTTTCTTCATTTGTCT
TTAGTGAGAATCAAATTATTAAATATCAAAATCACATTGGTTGATGAAAA
TGTATTTACTGGAAGCATCGCCAGACGAAACAACAGAAGTCTATTGCACC
TGTTCTGGTAAGAAACTTTGAAGAACTTTGTGAATACTTTGTTAAAGAAA
ATTATTTAGGCTCTGGGTGCTGAAGATAAGAACATATCGACGTTTTATTC
TTTCTTGGTAATCAAACCAAGTCTTCTCACATTTCCGTCACTATCTGTAA
CTTCAAATTTTCAAATACTTTTTGTGTCCAAATGTATGTAGACGTCCGAA
AATGTCAATCTTAACTTAATTTCGCAGGATAAAAGATAGGATGGCTGGGT
AGCAGTGCTCCTAGGTGCAGACCTGCCGGTATAGAACTGAAACAAATCAG
TGAGTTCAGGGTTGAGTGGTGTATTTTTTTTATCCTTGTAGCTCTCCTTC
AGTGTAGACATGTTCTACTTCAAAGAAAGTTCTGAAGAGTAGAATGTATT
CTGTATTTTAGCGGCCACTTTGATCCATTACGAGCCAGTAGGACGTTTTT
ACGAGGCAGCCGTCAAACGTTTGCGTAATGAAAAATCCATATCATTGGAA
GAAGAAGAAGGGGAAAATGAAAAAGAAGCCATTGAGAAAGATGAAGAATG
CAAGGAACTGACGTTCGATGAAAAACAATACTTGTTGACGCTCGATTCTG
CTGAGTGGAAGGT Coding sequence (CDS) from alignment at sc0001562:6930..8642- >TCONS_00037048 ID=TCONS_00037048|Name=TCONS_00037048|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at sc0001562:6930..8642- (Clytia hemisphaerica)
ATGGATAAATCAATTTGCACACCTTGTTTGAAAGGTTCGAAAATACCAAG
TAGACATCTGCTGCTGAATTTGAAATTTCAATCAAGTTCATTATCAAAAG
AAATTATTAGCACTGGTTATAAGGTGCTTTATGAAGACACTTTAGGATTG
ATTGATTGTTTTCCTTCGACAAGTTGTGCTGTTGTGATTGCATTTGAAAA
TTTGATTGTCACTGAACTTGAATTAAAATCGAAATTACGTCAACTGATGA
AATATTCCAAGAAGAAGGTTGTTTTATTTGAGATGTCATCAACTACTGAA
CAATATCTGAACACTTTGCAACAAAAGGTGATACGTGAAGATTGGGAACT
GTCAATCCTTTTATTCACAAAACTGAACGAAGTAGTGCTTTTTTTAACTC
AGTTAAGTCAACACCAAGACAATAGCTCCCTGTTTGGAAAACCTTCAGAT
AGACCTTCTCATAACGAATCTCTGCTTCAGATTGTGACTTCATTTCCTGG
CATCGGAGAAAAGAAAGCTAAAGAATTGTTGAAAAGATTTGGAACTTTAA
AAAATATTTTGGAAGCTCCTACGAAAGATTTAGCAGAAGTTGTTGGCGAG
AAAACTTCTTTTTCTTTGAAAAATATCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037048-exon-sc0001562-1575043694:7536..8642 | TCONS_00037048-exon-sc0001562-1575043694:7536..8642 | Clytia hemisphaerica | exon |
| TCONS_00037048-exon-sc0001562-1575043694:6930..7131 | TCONS_00037048-exon-sc0001562-1575043694:6930..7131 | Clytia hemisphaerica | exon |
| TCONS_00037048-exon-sc0001562-1510915933:7536..8642 | TCONS_00037048-exon-sc0001562-1510915933:7536..8642 | Clytia hemisphaerica | exon |
| TCONS_00037048-exon-sc0001562-1510915933:6930..7131 | TCONS_00037048-exon-sc0001562-1510915933:6930..7131 | Clytia hemisphaerica | exon |
| TCONS_00037048-exon-sc0001562-1491911889:7536..8642 | TCONS_00037048-exon-sc0001562-1491911889:7536..8642 | Clytia hemisphaerica | exon |
| TCONS_00037048-exon-sc0001562-1491911889:6930..7131 | TCONS_00037048-exon-sc0001562-1491911889:6930..7131 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001562 | supercontig | sc0001562:6930..8642 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR010994 | RuvA_2-like |
Blast
The following BLAST results are available for this feature:
|
