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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037036 ID=TCONS_00037036|Name=TCONS_00037036|organism=Clytia hemisphaerica|type=transcript|length=1127bp
GGTAAAGTATTCTTCAGTAAACATTTCAACTGACGAGTATTTAAAGGTTC
CAAGGAAAATTTTCCGATGATTCCTTTGTTGTGAGCTGATGAAAAATCAT
GATGTTTTCCACAGGATATTGCTGAGTGACTGATATCAAAAAGCGATTCT
TTACAGATATGGAACAAGCCGCAATCACCAAGACAGCCAGCATTTGACCA
GTAATTTACGCAAAGTTTGATGTCCTTGACGCAGAGGAAGACTTCTTTCT
TGGTACGAGTCAGCCGGAAAGTATCAGGATGGTTTTTCAACCAATTTAAA
CAAAGCAACATCTTTGATTGGAAGAAATGAGCACAGATTGTattcttctt
tattttgacaTGCGCGTTACGATATTGTATGATATATTTGAAGACGTCTA
GTTCTGATGGTGGTTCCCATTCTTGTGTCAATTTTGTGGCTGTGTCAACA
AATCCAGTGAAACCTGTCGTCGATGATAGTTTACGGTCTTCATGGGTCGG
GATCGACTGTGGCTGCTTAAGATCCTTTTCTATAACTGTGGATGGCTTGA
TGTTTGATCGACTTTGTGCTAGACTTTCTATACCAACTGCTTCAGAAGTC
TCCAAAGGGAGTACTGGGAGAGGTTTGGTTGCAGATATCTCTTGCGCAAA
GGGTTGCACAGTTGGAGGTTTGGGAGCTTGACGTTTTACAGGTTTCTCTG
TTGTTTCCCATTCCATAATCGATGTATCCTTGTTATCGAATAAGTCAAAT
TTGTTCTGATTAATAACAAATGAAGTTGCTGGCAATGGATTGAGTAATGA
TTGCTGTGGTGGCATCGGTTTCATTGAAAACGGTGGCAAAATATAACCAG
GGCCCAGGAGACCAGATTCTCCAGAGGAAGGTGGTGGGATGGGTATTCCA
TTAGCAGGTATACAAACGCCGAAGGGCGTTGGTCCAAAAGGACCAGGAGA
CGTTGGAGCCATAGGCAGTATGGGATTTATGTTGGAAAGAGATGTGCCGA
ATGCTTGATTTGTCGGTGAAAATGCACCAGGAAGTGGTTGAGTTGATGGC
GGTAAAGCTGTTATTGAACAATCCTTCTGTAGATAAATTAGTTTGGAAAA
ACATATTTAAAATAGAGTTcaatctct Run BLAST on NCBI protein sequence of TCONS_00037036-protein >TCONS_00037036-protein ID=TCONS_00037036-protein|Name=TCONS_00037036-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp
MAPTSPGPFGPTPFGVCIPANGIPIPPPSSGESGLLGPGYILPPFSMKPM
PPQQSLLNPLPATSFVINQNKFDLFDNKDTSIMEWETTEKPVKRQAPKPP
TVQPFAQEISATKPLPVLPLETSEAVGIESLAQSRSNIKPSTVIEKDLKQ
PQSIPTHEDRKLSSTTGFTGFVDTATKLTQEWEPPSELDVFKYIIQYRNA
HVKIKKNTICAHFFQSKMLLCLNWLKNHPDTFRLTRTKKEVFLCVKDIKL
CVNYWSNAGCLGDCGLFHICKESLFDISHSAISCGKHHDFSSAHNKGIIG
KFSLEPLNTRQLKCLLKNTL Run BLAST on NCBI transcript from alignment at sc0001558:489..1615 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037036 ID=TCONS_00037036|Name=TCONS_00037036|organism=Clytia hemisphaerica|type=transcript|length=1127bp|location=Sequence derived from alignment at sc0001558:489..1615 (Clytia hemisphaerica)
agagattgAACTCTATTTTAAATATGTTTTTCCAAACTAATTTATCTACA
GAAGGATTGTTCAATAACAGCTTTACCGCCATCAACTCAACCACTTCCTG
GTGCATTTTCACCGACAAATCAAGCATTCGGCACATCTCTTTCCAACATA
AATCCCATACTGCCTATGGCTCCAACGTCTCCTGGTCCTTTTGGACCAAC
GCCCTTCGGCGTTTGTATACCTGCTAATGGAATACCCATCCCACCACCTT
CCTCTGGAGAATCTGGTCTCCTGGGCCCTGGTTATATTTTGCCACCGTTT
TCAATGAAACCGATGCCACCACAGCAATCATTACTCAATCCATTGCCAGC
AACTTCATTTGTTATTAATCAGAACAAATTTGACTTATTCGATAACAAGG
ATACATCGATTATGGAATGGGAAACAACAGAGAAACCTGTAAAACGTCAA
GCTCCCAAACCTCCAACTGTGCAACCCTTTGCGCAAGAGATATCTGCAAC
CAAACCTCTCCCAGTACTCCCTTTGGAGACTTCTGAAGCAGTTGGTATAG
AAAGTCTAGCACAAAGTCGATCAAACATCAAGCCATCCACAGTTATAGAA
AAGGATCTTAAGCAGCCACAGTCGATCCCGACCCATGAAGACCGTAAACT
ATCATCGACGACAGGTTTCACTGGATTTGTTGACACAGCCACAAAATTGA
CACAAGAATGGGAACCACCATCAGAACTAGACGTCTTCAAATATATCATA
CAATATCGTAACGCGCAtgtcaaaataaagaagaatACAATCTGTGCTCA
TTTCTTCCAATCAAAGATGTTGCTTTGTTTAAATTGGTTGAAAAACCATC
CTGATACTTTCCGGCTGACTCGTACCAAGAAAGAAGTCTTCCTCTGCGTC
AAGGACATCAAACTTTGCGTAAATTACTGGTCAAATGCTGGCTGTCTTGG
TGATTGCGGCTTGTTCCATATCTGTAAAGAATCGCTTTTTGATATCAGTC
ACTCAGCAATATCCTGTGGAAAACATCATGATTTTTCATCAGCTCACAAC
AAAGGAATCATCGGAAAATTTTCCTTGGAACCTTTAAATACTCGTCAGTT
GAAATGTTTACTGAAGAATACTTTACC Coding sequence (CDS) from alignment at sc0001558:489..1615 >TCONS_00037036 ID=TCONS_00037036|Name=TCONS_00037036|organism=Clytia hemisphaerica|type=CDS|length=960bp|location=Sequence derived from alignment at sc0001558:489..1615 (Clytia hemisphaerica)
ATGGCTCCAACGTCTCCTGGTCCTTTTGGACCAACGCCCTTCGGCGTTTG
TATACCTGCTAATGGAATACCCATCCCACCACCTTCCTCTGGAGAATCTG
GTCTCCTGGGCCCTGGTTATATTTTGCCACCGTTTTCAATGAAACCGATG
CCACCACAGCAATCATTACTCAATCCATTGCCAGCAACTTCATTTGTTAT
TAATCAGAACAAATTTGACTTATTCGATAACAAGGATACATCGATTATGG
AATGGGAAACAACAGAGAAACCTGTAAAACGTCAAGCTCCCAAACCTCCA
ACTGTGCAACCCTTTGCGCAAGAGATATCTGCAACCAAACCTCTCCCAGT
ACTCCCTTTGGAGACTTCTGAAGCAGTTGGTATAGAAAGTCTAGCACAAA
GTCGATCAAACATCAAGCCATCCACAGTTATAGAAAAGGATCTTAAGCAG
CCACAGTCGATCCCGACCCATGAAGACCGTAAACTATCATCGACGACAGG
TTTCACTGGATTTGTTGACACAGCCACAAAATTGACACAAGAATGGGAAC
CACCATCAGAACTAGACGTCTTCAAATATATCATACAATATCGTAACGCG
CAtgtcaaaataaagaagaatACAATCTGTGCTCATTTCTTCCAATCAAA
GATGTTGCTTTGTTTAAATTGGTTGAAAAACCATCCTGATACTTTCCGGC
TGACTCGTACCAAGAAAGAAGTCTTCCTCTGCGTCAAGGACATCAAACTT
TGCGTAAATTACTGGTCAAATGCTGGCTGTCTTGGTGATTGCGGCTTGTT
CCATATCTGTAAAGAATCGCTTTTTGATATCAGTCACTCAGCAATATCCT
GTGGAAAACATCATGATTTTTCATCAGCTCACAACAAAGGAATCATCGGA
AAATTTTCCTTGGAACCTTTAAATACTCGTCAGTTGAAATGTTTACTGAA
GAATACTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037036-exon-sc0001558-1491911889:489..1615 | TCONS_00037036-exon-sc0001558-1491911889:489..1615 | Clytia hemisphaerica | exon |
| TCONS_00037036-exon-sc0001558-1510915933:489..1615 | TCONS_00037036-exon-sc0001558-1510915933:489..1615 | Clytia hemisphaerica | exon |
| TCONS_00037036-exon-sc0001558-1575043694:489..1615 | TCONS_00037036-exon-sc0001558-1575043694:489..1615 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001558 | supercontig | sc0001558:489..1615 . |
Blast
The following BLAST results are available for this feature:
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