TCONS_00037033 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037033
Unique NameTCONS_00037033
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1097

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037033 ID=TCONS_00037033|Name=TCONS_00037033|organism=Clytia hemisphaerica|type=transcript|length=1097bp
ggaaaatttgGTTATAGAGCTTTTGGTTCctgaaatattttagaaaaccT
TACCCCTCGCAAGAGTCCCTCGAATGGgtacaaaaatcattaaaaacaat
tgagtctctgtaagggctAAAATCTCTACGGGTGACAGAACGTCAAATCA
Taaacaaaattttcgaaattcagtctatctaataagggtcgattttcgag
cTTTAGCTTGAACATACCCGTCATTTCGCAACCCTAGTACACCCCCTCTC
GAGATTCGAAGGAAGGAAGAAGAAGTTTCAGTAGAAAGAAGTTcgaccgg
ggctgtgagacgggtgtgtatattttttttttcttgaagagcAAAGTATC
TTAATGTGCGGACTGTAAATTAATCGGAACAAATTTTACAGCAACGAGAA
TCTTACCTAcctttgatatttttgataaaacttaGCGTTGCAGATTTCTT
CCACATCTAAAACAGTGACAGTTCTTCCTAGTGAAGTTTTGAACTGTTGT
gcgatttgttgttttttgtttggtttgacATCGAGACGACCTCCTTCTAA
GGAAACTTCTTTCGGCCAATGCCAAGGTGTGATGTATTCCTCTTGTGGCG
TTGATGACCTGTTAAAAAGTGACCAAGATAAAAATTGAGTAGTGTTCTCA
TTTCCAAAGGTTCTAAGCAAGaaaaatatgcaatttttacACAATaattt
tcgagtggggatgaaatcaaagtcaatttcccagtgaggctgaaattcca
gactgaaattccagggtattttcccatcggggaccaaatttttgcaaaaa
ttttccagtggggcttggCGGTCCCAGTGACATGTCTGACATGTCTGTGA
NCCAGGGGTGTGATATCTGAAGTTTATCATAAAACTAAATATTACCTGAG
GCTCGGCCGATTTCCAGGTGAATCAGGAAAGTTCCTTTGTACATTAAACA
TAGAAGTAGTATATACTGTCACAACAAATATTCCAATGGTCTGGTAAGAA
CATACTGAAAACTCTTTTGTTATGCGGCGTTGTAAAGTTATGAAGAACAG
ATTTAGATTCGTTGCTTCTCTCAGCTAACATACATCTACCAGTAGGG
Run BLAST on NCBI

transcript from alignment at sc0001558:18441..19601-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037033 ID=TCONS_00037033|Name=TCONS_00037033|organism=Clytia hemisphaerica|type=transcript|length=1161bp|location=Sequence derived from alignment at sc0001558:18441..19601- (Clytia hemisphaerica)
GGAAAATTTGGTTATAGAGCTTTTGGTTCCTGAAATATTTTAGAAAACCT
TACCCCTCGCAAGAGTCCCTCGAATGGGTACAAAAATCATTAAAAACAAT
TGAGTCTCTGTAAGGGCTAAAATCTCTACGGGTGACAGAACGTCAAATCA
TAAACAAAATTTTCGAAATTCAGTCTATCTAATAAGGGTCGATTTTCGAG
CTTTAGCTTGAACATACCCGTCATTTCGCAACCCTAGTACACCCCCTCTC
GAGATTCGAAGGAAGGAAGAAGAAGTTTCAGTAGAAAGAAGTTCGACCGG
GGCTGTGAGACGGGTGTGTATATTTTTTTTTTCTTGAAGAGCAAAGTATC
TTAATGTGCGGACTGTAAATTAATCGGAACAAATTTTACAGCAACGAGAA
TCTTACCTACCTTTGATATTTTTGATAAAACTTAGCGTTGCAGATTTCTT
CCACATCTAAAACAGTGACAGTTCTTCCTAGTGAAGTTTTGAACTGTTGT
GCGATTTGTTGTTTTTTGTTTGGTTTGACATCGAGACGACCTCCTTCTAA
GGAAACTTCTTTCGGCCAATGCCAAGGTGTGATGTATTCCTCTTGTGGCG
TTGATGACCTGTTAAAAAGTGACCAAGATAAAAATTGAGTAGTGTTCTCA
TTTCCAAAGGTTCTAAGCAAGAAAAATATGCAATTTTTACACAATAATTT
TCGAGTGGGGATGAAATCAAAGTCAATTTCCCAGTGAGGCTGAAATTCCA
GACTGAAATTCCAGGGTATTTTCCCATCGGGGACCAAATTTTTGCAAAAA
TTTTCCAGTGGGGCTTGGCGGTCCCAGTGACATGTCTGACATGTCTGTGA
NCCATCGGGGACCAAATTTTTGCAAAAATTTTCCAGTGGGGCTTGGGTCC
CAGTGGGTCTGTGTCACAGGGGTGTGATATCTGAAGTTTATCATAAAACT
AAATATTACCTGAGGCTCGGCCGATTTCCAGGTGAATCAGGAAAGTTCCT
TTGTACATTAAACATAGAAGTAGTATATACTGTCACAACAAATATTCCAA
TGGTCTGGTAAGAACATACTGAAAACTCTTTTGTTATGCGGCGTTGTAAA
GTTATGAAGAACAGATTTAGATTCGTTGCTTCTCTCAGCTAACATACATC
TACCAGTAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021884XLOC_021884Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037033-exon-sc0001558-1575043694:18749..19601TCONS_00037033-exon-sc0001558-1575043694:18749..19601Clytia hemisphaericaexon
TCONS_00037033-exon-sc0001558-1575043694:18441..18684TCONS_00037033-exon-sc0001558-1575043694:18441..18684Clytia hemisphaericaexon
TCONS_00037033-exon-sc0001558-1510915933:18749..19601TCONS_00037033-exon-sc0001558-1510915933:18749..19601Clytia hemisphaericaexon
TCONS_00037033-exon-sc0001558-1510915933:18441..18684TCONS_00037033-exon-sc0001558-1510915933:18441..18684Clytia hemisphaericaexon
TCONS_00037033-exon-sc0001558-1491911889:18749..19601TCONS_00037033-exon-sc0001558-1491911889:18749..19601Clytia hemisphaericaexon
TCONS_00037033-exon-sc0001558-1491911889:18441..18684TCONS_00037033-exon-sc0001558-1491911889:18441..18684Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001558supercontigsc0001558:18441..19601 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.232798	0.173962	0.111025	0.0694084	0.46008	0.490913	0.592088	1.03284	0.433661	0.205043	0.569848	0.1423	0.514365	0.229049	0.271223	0.461845	0.206094	0.691491	0.365811	0.610536	0.588234	0.611895	0.213009	0.236064	0	0.0765658	0.378579	0.15859	0.232598	0.0456802
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037033 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top