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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037028 ID=TCONS_00037028|Name=TCONS_00037028|organism=Clytia hemisphaerica|type=transcript|length=1409bp
TTTACCACAATGCAACAGCATAATTTGGGTCCTGTTTATTTCACCAAAAG
AAATGTGATAAGGAGACCTGTGTTCGTTTCAACGTCATCAACGCCACAAG
AGGAAGACATCACACCTTGGCATTGGCCGAAAGAAGTTTCCTTAGAAGGA
GGTCGTCTTGATGTCGAACCaaccaaaaaacaacaaatttcacAACAATT
CAAAACTTCACTAGCAAGAAATGTGACTGTTTTGGATGTGGAAGAAATCT
GTAATGCTGAGTTTTATCAAAAGTACCAAAGCAAAAAGAAAATACTAGCA
AAGAAGCTGGGTGAAAACAATGTCAATGAACTCGAGCTGTATCATGGGAC
TGATGCCACAGTGGTTGATGGGATATGTAAACAGAATTTCGATTGGAGAT
TGAACGGTAAAAACGCAACAATGTTCGGCCAAGGAAGTTATTTCGCCACA
CAAGCTTCTTACAGTCTCAACTTCACGCGACCGGATTCCAATAAAATCAG
ATATATGTTCGTTGCAAAGGTTCTGGCAGGAAGATATACTAAGGGAAGTT
CTGATATCAAACGACCACCACCAATATCACCTTTAGATCCTCACACACTT
CACGATAGCTGTGTCGATAACATCTCATCACCTTCAATGTATATTGTTTT
TGAGCGCGATCAATGCTATCCTCAATATCTGATCACGTTCTTAGAAGATA
ACGAAAACCTGGCGTTGCGTGGTAACCGTTATTCTGTAGATTTTGATCAA
AGTGCTCTCCGAAGACAGAAACAAGCAATCAATTCTCTCAGTTACAAACA
CAAATTGAAACCTCTAAATGAAAGACCCAGAAGAAGTTATGCTGCTGCTT
CAAACGCTTCAACTCTTACTGAAGATTCAAGTTATTCGACGTCGACAAAC
AGGCCGAGTTACACGACGTCATCACATCAACCGACCTACGGGATATCCTC
AACAACACCGATCGACTTGAATGCATCAAATACGCCGAGTTGGCAACATT
TACCAAATCGGAATCATTCATCTAGTGGACCAACTCGACAAACACCGATA
ACTACAGCGACTCAGCGTGCTTCTACTCTGATTCATGCTTCATCAAATAA
TTTCAATCGCCAGACATCACCAACTTACTCGAATGCGCAAACTCAACCTA
AAGCCAATAAGAAAGACGGCTGTATTATTTCTTAACCTATATGATTTTTC
TTCAGCTGCtcctgttgaatttcaatatttgtCACAGTCGGAAAAGACCT
GAACGCTGAGGTTGAGGCATAAAAAATGGATGCACATCCTAACCAACatc
tccttctcacagacccggcagaattttttcagccagtgggggtaaaaata
acggactaaaactcgatggggatcgatATTCCCTTATTTTTTATGACCGG
GGATTTGAA Run BLAST on NCBI transcript from alignment at sc0001558:4289..8983+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037028 ID=TCONS_00037028|Name=TCONS_00037028|organism=Clytia hemisphaerica|type=transcript|length=4695bp|location=Sequence derived from alignment at sc0001558:4289..8983+ (Clytia hemisphaerica)
TTTACCACAATGCAACAGCATAATTTGGGTCCTGTTTATTTCACCAAAAG
AAATGTGATAAGGAGACCTGTGTTCGTTTCAACGTATGTATATTTAATTC
AACAGGCCACTACTATATTAGGAGTATTAAATTATTTACAGTCCACTTTA
CTGATGCCACCCTGATGAGAAGGGTTTGTAAGATCCTAGAAATGCAAAGT
AAGTTATACTATAAGGGTGTACTAGGGTTGGAGAATGTCGCCTACGTGTG
GACCAAACCTCCGAGCTCTTACCCTAAAAGAGATAAGATTAGATAACACT
TTTAAAGGAAGAGTCCCCCTCAGAGAAGTTGGTTAAAAAGTGACCCTTAC
AGGGACGATTTTCTAGAAATtgtcctacccttagtgagattTTATTTGAC
TTTATTGTCGAAGATTCTAATTCTGATAGATACCTACTATTTTCAATTCT
TGTTGTTTTGTAACACTTAGAGAGGCCTTAGAAGGTTGAACTACTCAGAG
GCTTATCTCATAAGATCAGTAAGataattagtttttaggattttactTCA
TATAAAAAAGTAGTAAGTTATTATTTTCGAACTCAGGAGATAGAACGGGA
TCTGCTCTGGTGAGACTTATGTTCTCTGCTACCCTGATGAAAAGGTTTTT
CGAGATCTTTGGACATAAAATAAAGCAATTTCTTAGGTTTACAAAATAAT
ATTCATTCGTATGATATTTTCATATGATTTCAACAGGTCATCAACGCCAC
AAGAGGAAGACATCACACCTTGGCATTGGCCGAAAGAAGTTTCCTTAGAA
GGAGGTCGTCTTGATGTCGAACCaaccaaaaaacaacaaatttcacAACA
ATTCAAAACTTCACTAGCAAGAAATGTGACTGTTTTGGATGTGGAAGAAA
TCTGTAATGCTGAGTTTTATCAAAAGTACCAAAGGTATATACTTTTTGTG
TGTACAGCTGAAGTTCAGGAGAATTAGTCAAAATTTCACagaaatttgga
caaaattcCCAAcacctgaaaattttttgaaaaaaagaagcttTCTGGGG
TCGGAAGAGGGAGCATATTCAATGCTTCACAAATCACCAGAATTAATCGG
TTAGCCGATCTCGTATTAGGATTAAGTAGTCTCTTAGACCTCACTTTGAG
TCTTTTCCGATCCTCGCATCGATGGGCTTCTTTCTGGGGCTCAGCATGGT
ATCCTTATAGGATCTTCTTTACGAAGTTTCAGCCTGTTGAGAAATTTGTC
CATACAAACGACTATCTTTTTTATATATTGTTTTTCTCAGCAAAAAGAAA
ATACTAGCAAAGAAGCTGGGTGAAAACAATGTCAATGAACTCGAGCTGTA
TCATGGGACTGATGCCACAGTGGTTGATGGGATATGTAAACAGAATTTCG
ATTGGAGATTGAACGGTAAAAACGCAACAATGTTCGGCCAAGGAAGTTAT
TTCGCCACACAAGCTTCTTACAGTCTCAACTTCACGCGACCGGATTCCAA
TAAAATCAGATATATGTTCGTTGCAAAGGTTCTGGCAGGAAGATATACTA
AGGtacagaaaaatatatttttttttctttactgaCTGTTTGTTTCAATG
ATATTTATTTCGTGTCCAGCTCCAGTCAGGTATCGAGCACAGATATTTGT
CGTAACGTTTCTTGAATGCATCTTATGAGCAGCCAGTGCTGTTTCGTATG
TCACAtggtaggctacgtcatatcttctttcgtttcgagcgtaaatctcc
tactcttcgggctatgaggaCTGCTCTTgctttgaatattgaaattctcc
ggataaaTCGCACGCGGACTGAGGTTTTAATAAAACGATAGAGTTTCGGA
ACCtaaaccaatcagctgtgttttaaacattcttttatttgaaatctcta
ttgataaacatcttttgtgaaagtttttaagcctattaataagcaattcc
tgGTGGGGCTACTAGTGGCTAcatatagcagtgcctatagaccaagagta
aggcctaaaagcctggagctgtctattatGTAGACTAGTCAGATGGTGGT
AGACTGTTGAAGAGTTTTGAGCCCTGTACGGCTAGACTTTCACAAATAAA
CTTGCCAAATCTACTTCTGTAAATTCTTCGGAGCTAGCATTTTCGGCCAT
GATCTTAAAAACGATTACATTACCGGTATTATTTCCCAGAACCATGtact
tgagaaaaaaattaaaattaaaatagaaaataaaatttggcttATGACGT
GGAAAAAGGAACACCCATAgattttaaagcccgaagggctagatgtcgtg
cttcggctgaaaactgtgccgaggttaggaagggaatcctacctaagtca
cgtgacattacaatagaatttcagcgcttgaccaataaaaAACTTCGTGT
TTTCGAAAACTATAGCAGCAAACTtctttgcgatattcacttttttttgc
ttgaaagagctcaaagcacgacatctagcggTTAATGATGGTATTCCATT
CGTAggatcagaggaatgtaaagagatggaaaaacagcttttctgattac
tcaaagttctacgatcacttctattgaaaattctattgtaaaaacgttga
ttaggtcattaaacgaaagtccagaaaagacggcccgccatacaaatcgg
acggtttctacatgatttgacgataaaaatgaaaatttgtttttcctttt
ttgccgattactagttcaatttttaagaataaggaacaatatttttacca
atgtataacaaaagaaattcttaacgcaatgatattaaattggttcttat
aaaactgtcagaagtcgagtaaaatcaagatgaagttataattttctcga
gctctagctttccatattatggtgcggtcatgatgcggttatatcagtag
aatcgctaggaaattctgagcaagaagatataggtaccttttcgtatagg
agaggtgtactcaaaatataagccctaaaagtttgcgcataatcaggctt
gaaacaaaagaattttgtcacaacacgctaattatgcagattttttatag
cgacaacaaaagaaacctatttactcgacataaactcccttaagggcaag
agacctggtatatgacgagccgtttttccattgttttcaagaagctgttt
ttccatctctttacattcctctggtagGATGTTCCCAGCTCAAGTTTAAA
GTTTTGAAGTCATTTTTTATTACACTTAGCCATGTTGTTGTTGGTTTCCC
TCTGGGCCACTAGCGACTTTAAGCATCTAGGACGGCGACTTGAACGAGGA
CGTGAAGTAAATCATAAAAGCAAATGGCAAATTATATGCGAGTTCATCTA
GATTTAATATCACATGGACAAATTTTAAATGTaggaaagtctttaaaaaa
taaagttataATTCTCGAGGGATTCATATCATTTAAGACTATTGTACTCT
TCCTTTACCGTCTTCGTCCTGAAGACGACGTCAAAACAGAAATTTCAAGT
TGTCTTGAGATTTGAAAACGTCCATTAATTACCCTATTAAAATTAACTAT
TCTCATGAAACAATTGATATGAAAAGCTTCGATCCAGATATCAATCCCAA
AgggttttctttttgttcaatccCGCCGTACTCTTTCAAAGTTGCCGTTC
TAAATGCTTAAGGTCCCTACTGATACTCTGAGGTGGCGTAAACTTTCATT
CATTTTAAGCTTTCTTCATTGGTATCATTTTTCGCAGTTGTAACCATTGA
CCTCAAATCCCGAatggctagactcgagactcctggatgggaaatgaagc
cacttatttccaatgtttttcatttgtagGGAAGTTCTGATATCAAACGA
CCACCACCAATATCACCTTTAGATCCTCACACACTTCACGATAGCTGTGT
CGATAACATCTCATCACCTTCAATGTATATTGTTTTTGAGCGCGATCAAT
GCTATCCTCAATATCTGATCACGTTCTTAGAAGATAACGAAAACCTGGCG
TTGCGTGGTAACCGTTATTCTGTAGATTTTGATCAAAGTGCTCTCCGAAG
ACAGAAACAAGCAATCAATTCTCTCAGTTACAAACACAAATTGAAACCTC
TAAATGAAAGACCCAGAAGAAGTTATGCTGCTGCTTCAAACGCTTCAACT
CTTACTGAAGATTCAAGTTATTCGACGTCGACAAACAGGCCGAGTTACAC
GACGTCATCACATCAACCGACCTACGGGATATCCTCAACAACACCGATCG
ACTTGAATGCATCAAATACGCCGAGTTGGCAACATTTACCAAATCGGAAT
CATTCATCTAGTGGACCAACTCGACAAACACCGATAACTACAGCGACTCA
GCGTGCTTCTACTCTGATTCATGCTTCATCAAATAATTTCAATCGCCAGA
CATCACCAACTTACTCGAATGCGCAAACTCAACCTAAAGCCAATAAGAAA
GACGGCTGTATTATTTCTTAACCTATATGATTTTTCTTCAGCTGCtcctg
ttgaatttcaatatttgtCACAGTCGGAAAAGACCTGAACGCTGAGGTTG
AGGCATAAAAAATGGATGCACATCCTAACCAACatctccttctcacagac
ccggcagaattttttcagccagtgggggtaaaaataacggactaaaactc
gatggggatcgatATTCCCTTATTTTTTATGACCGGGGATTTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037028-exon-sc0001558-1491911889:4289..4371 | TCONS_00037028-exon-sc0001558-1491911889:4289..4371 | Clytia hemisphaerica | exon |
| TCONS_00037028-exon-sc0001558-1510915933:4289..4371 | TCONS_00037028-exon-sc0001558-1510915933:4289..4371 | Clytia hemisphaerica | exon |
| TCONS_00037028-exon-sc0001558-1575043694:4289..4371 | TCONS_00037028-exon-sc0001558-1575043694:4289..4371 | Clytia hemisphaerica | exon |
| TCONS_00037028-exon-sc0001558-1491911889:5025..5222 | TCONS_00037028-exon-sc0001558-1491911889:5025..5222 | Clytia hemisphaerica | exon |
| TCONS_00037028-exon-sc0001558-1510915933:5025..5222 | TCONS_00037028-exon-sc0001558-1510915933:5025..5222 | Clytia hemisphaerica | exon |
| TCONS_00037028-exon-sc0001558-1575043694:5025..5222 | TCONS_00037028-exon-sc0001558-1575043694:5025..5222 | Clytia hemisphaerica | exon |
| TCONS_00037028-exon-sc0001558-1491911889:5579..5840 | TCONS_00037028-exon-sc0001558-1491911889:5579..5840 | Clytia hemisphaerica | exon |
| TCONS_00037028-exon-sc0001558-1510915933:5579..5840 | TCONS_00037028-exon-sc0001558-1510915933:5579..5840 | Clytia hemisphaerica | exon |
| TCONS_00037028-exon-sc0001558-1575043694:5579..5840 | TCONS_00037028-exon-sc0001558-1575043694:5579..5840 | Clytia hemisphaerica | exon |
| TCONS_00037028-exon-sc0001558-1491911889:8118..8983 | TCONS_00037028-exon-sc0001558-1491911889:8118..8983 | Clytia hemisphaerica | exon |
| TCONS_00037028-exon-sc0001558-1510915933:8118..8983 | TCONS_00037028-exon-sc0001558-1510915933:8118..8983 | Clytia hemisphaerica | exon |
| TCONS_00037028-exon-sc0001558-1575043694:8118..8983 | TCONS_00037028-exon-sc0001558-1575043694:8118..8983 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001558 | supercontig | sc0001558:4289..8983 + |
Blast
BLAST of TCONS_00037028 vs. Swiss-Prot (Human)
Match: PARPT (TCDD-inducible poly [ADP-ribose] polymerase OS=Homo sapiens GN=TIPARP PE=2 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 7.937e-44 Identity = 76/166 (45.78%), Postives = 114/166 (68.67%), Query Frame = 1
Query: 229 VLDVEEICNAEFYQKYQSKKKILAKKLGENN--VNELELYHGTDATVVDGICKQNFDWRLNGKNATMFGQGSYFATQASYSLNFTRPDSNKIRYMFVAKVLAGRYTKGSSDIKRPPPISPLDPHT-LHDSCVDNISSPSMYIVFERDQCYPQYLITFLEDNENLAL 717
+L + + N ++KY+ KK+ + +K+ + +NE L+HGT VVDGICK NFD R+ GK+ATMFGQGSYFA +ASYS NF++ S + +MF+AKVL GRYT GS ++RPPP++P + L+DSCVDN P ++++F DQ YP ++I + E + +++
Sbjct: 492 ILQILRVQNQFLWEKYKRKKEYMNRKMFGRDRIINERHLFHGTSQDVVDGICKHNFDPRVCGKHATMFGQGSYFAKKASYSHNFSKKSSKGVHFMFLAKVLTGRYTMGSHGMRRPPPVNPGSVTSDLYDSCVDNFFEPQIFVIFNDDQSYPYFVIQYEEVSNTVSI 657
The following BLAST results are available for this feature:
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