TCONS_00037023 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037023
Unique NameTCONS_00037023
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length929

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037023 ID=TCONS_00037023|Name=TCONS_00037023|organism=Clytia hemisphaerica|type=transcript|length=929bp
TGGCGATAGCAGATGATTATTTCCTTGACGCCGACAGAGTACTATTTTAC
CTTTCaacaaaaagtaaagaaagtgAGAACATGGAAAAACTAGTAATCCC
AGATAAGTTAGTTCAGAAAATCCTAACAGCATTTCATGACCACGTAACAG
GAGGACATTTTAGCCTACAGAAGACATATCAGaagattaaagaaaaatat
tactGGAGAGGAATGTACAAAGATTGTAAGAATTGTATAGAGTCATGTGA
AGTCTGTTCTACACACAAAATTAAtcccaaaacaaagaaagcaaGAATGG
AAATTTTTGCGCATGCATCAGGACCTTTCGAGAGGATCGGTGTGGACATA
TGCGGCCCTTTTCTACTCACAGAATCCAAAAACAAGTATATAATGGTGGC
CGTTGATCATTTTACCAAATGAGTAGAAGCTTGGGCACTCCCTCATACAG
AAGCACATCTACTTGCCAGAATTCTATTCAATGAGCTCATATGCCGCCAT
GGTGTTCCACGTCAAATGTTGACCGATCGAGGAAAGAATTTTTATGTCGA
ACCTAATGGCTGAACTTTGTGTAATGACAGGTATGAAAAAGCTGAACACC
TCGTCTTACCACCCATAAACAAATGGCATGGTTGAAAGAATGAATGGCAC
CATTGTTTGCCGCTTAGCAATGCACTGTGAAGAAAGACAAAGAGATTAGG
ATGTCCATCTACCAGGTATACTTTTATCGACTCGAACAACAGTGGCAAgt
tcaacaaaagaaacaccTTTCTTTTTGGTGTATGGAAGACAAGCAACAAT
GCCCCCGGATGTATCTATACTTAAACCGTCAAAGGTAGCACCGACAATCG
AAGAATACAGATATCAACTTTTACAGTCAGTTACAATAGCTAGACAAAAT
GTTAATGACAGACTCGAAGCTTCAGGTAA
Run BLAST on NCBI

protein sequence of TCONS_00037023-protein

>TCONS_00037023-protein ID=TCONS_00037023-protein|Name=TCONS_00037023-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
AIADDYFLDADRVLFYLSTKSKESENMEKLVIPDKLVQKILTAFHDHVTG
GHFSLQKTYQKIKEKYYWRGMYKDCKNCIESCEVCSTHKINPKTKKARME
IFAHASGPFERIGVDICGPFLLTESKNKYIMVAVDHFTK
Run BLAST on NCBI

transcript from alignment at sc0001556:744..1672

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037023 ID=TCONS_00037023|Name=TCONS_00037023|organism=Clytia hemisphaerica|type=transcript|length=929bp|location=Sequence derived from alignment at sc0001556:744..1672 (Clytia hemisphaerica)
TTACCTGAAGCTTCGAGTCTGTCATTAACATTTTGTCTAGCTATTGTAAC
TGACTGTAAAAGTTGATATCTGTATTCTTCGATTGTCGGTGCTACCTTTG
ACGGTTTAAGTATAGATACATCCGGGGGCATTGTTGCTTGTCTTCCATAC
ACCAAAAAGAAAggtgtttcttttgttgaacTTGCCACTGTTGTTCGAGT
CGATAAAAGTATACCTGGTAGATGGACATCCTAATCTCTTTGTCTTTCTT
CACAGTGCATTGCTAAGCGGCAAACAATGGTGCCATTCATTCTTTCAACC
ATGCCATTTGTTTATGGGTGGTAAGACGAGGTGTTCAGCTTTTTCATACC
TGTCATTACACAAAGTTCAGCCATTAGGTTCGACATAAAAATTCTTTCCT
CGATCGGTCAACATTTGACGTGGAACACCATGGCGGCATATGAGCTCATT
GAATAGAATTCTGGCAAGTAGATGTGCTTCTGTATGAGGGAGTGCCCAAG
CTTCTACTCATTTGGTAAAATGATCAACGGCCACCATTATATACTTGTTT
TTGGATTCTGTGAGTAGAAAAGGGCCGCATATGTCCACACCGATCCTCTC
GAAAGGTCCTGATGCATGCGCAAAAATTTCCATTCttgctttctttgttt
tgggaTTAATTTTGTGTGTAGAACAGACTTCACATGACTCTATACAATTC
TTACAATCTTTGTACATTCCTCTCCagtaatatttttctttaatcttCTG
ATATGTCTTCTGTAGGCTAAAATGTCCTCCTGTTACGTGGTCATGAAATG
CTGTTAGGATTTTCTGAACTAACTTATCTGGGATTACTAGTTTTTCCATG
TTCTcactttctttactttttgttGAAAGGTAAAATAGTACTCTGTCGGC
GTCAAGGAAATAATCATCTGCTATCGCCA

Coding sequence (CDS) from alignment at sc0001556:744..1672

>TCONS_00037023 ID=TCONS_00037023|Name=TCONS_00037023|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at sc0001556:744..1672 (Clytia hemisphaerica)
TCATTTGGTAAAATGATCAACGGCCACCATTATATACTTGTTTTTGGATT
CTGTGAGTAGAAAAGGGCCGCATATGTCCACACCGATCCTCTCGAAAGGT
CCTGATGCATGCGCAAAAATTTCCATTCttgctttctttgttttgggaTT
AATTTTGTGTGTAGAACAGACTTCACATGACTCTATACAATTCTTACAAT
CTTTGTACATTCCTCTCCagtaatatttttctttaatcttCTGATATGTC
TTCTGTAGGCTAAAATGTCCTCCTGTTACGTGGTCATGAAATGCTGTTAG
GATTTTCTGAACTAACTTATCTGGGATTACTAGTTTTTCCATGTTCTcac
tttctttactttttgttGAAAGGTAAAATAGTACTCTGTCGGCGTCAAGG
AAATAATCATCTGCTATCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021878XLOC_021878Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037023-proteinTCONS_00037023-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037023-exon-sc0001556-1491911889:744..1672TCONS_00037023-exon-sc0001556-1491911889:744..1672Clytia hemisphaericaexon
TCONS_00037023-exon-sc0001556-1510915933:744..1672TCONS_00037023-exon-sc0001556-1510915933:744..1672Clytia hemisphaericaexon
TCONS_00037023-exon-sc0001556-1575043694:744..1672TCONS_00037023-exon-sc0001556-1575043694:744..1672Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001556supercontigsc0001556:744..1672 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.065542	0	0	0.0384921	0.0656101	0.113742	0.05238	0	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015416Znf_H2C2_histone_UAS-bd
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00037023 vs. Swiss-Prot (Human)
Match: GIN1 (Gypsy retrotransposon integrase-like protein 1 OS=Homo sapiens GN=GIN1 PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 1.098e-17
Identity = 41/183 (22.40%), Postives = 88/183 (48.09%), Query Frame = 3 
Query:   21 FLDADRVLFYLSTKSKESENMEKLVIPDKLVQKILTAFHDHVTGGHFSLQKTYQKIKEKYYWRGMYKDCKNCIESCEVCSTHK----INPKTKKARMEIFAHASGPFERIGVDICGPFLLTESKNKYIMVAVDHFTK*VEAWALPHTEAHLLARILFNELICRHGVPRQMLTDRGKNFYVEPN 557
            F+  ++ LFY+    K++     +++ ++  +K+L   H++ +G H  + +T   ++  YYW  +  D K  + +C+ C   K    + PK    ++E       P+  + VD+ GPF  +   + Y ++  D FTK +    L    A  +++ + N +   +G P++++ D+   F  + N
Sbjct:   43 FVFKEKKLFYVGKDRKQNR---LVIVSEEEKKKVLRECHENDSGAHHGISRTLTLVESNYYWTSVTNDVKQWVYACQHCQVAKNTVIVAPKQHLLKVE------NPWSLVTVDLMGPFHTSNRSHVYAIIMTDLFTKWIVILPLCDVSASEVSKAIIN-IFFLYGPPQKIIMDQRDEFIQQIN 215

HSP 2 Score: 41.5874 bits (96), Expect = 1.098e-17
Identity = 27/91 (29.67%), Postives = 42/91 (46.15%), Query Frame = 1 
Query:  541 FMSNLMAELCVMTGMKKLNTSSYHP*TNGMV---ERMNGTIVCRLAMHCEERQRD*DVHLPGILLSTRTTVASSTKETPFFLVYGRQATMP 804
            F+  +  EL  + G+K++  S     T+G V   E    TI   L+ HC +   + D HL  +  +   T    TK TP+F ++ R   MP
Sbjct:  210 FIQQINIELYRLFGIKQIVISH----TSGTVNPTESTPNTIKAFLSKHCADHPNNWDDHLSAVSFAFNVTHLEPTKNTPYFQMFSRNPYMP 296
The following BLAST results are available for this feature:
BLAST of TCONS_00037023 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GIN11.098e-1722.40Gypsy retrotransposon integrase-like protein 1 OS=... [more]
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