TCONS_00037022 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037022
Unique NameTCONS_00037022
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length603

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037022 ID=TCONS_00037022|Name=TCONS_00037022|organism=Clytia hemisphaerica|type=transcript|length=603bp
GGTAACTGCATCTTTGAGGTGTCCAGGCGTTTGCAACCGAGGTGGTGTTT
CCAAGAGAGAAGGCTACTGTTCATCTTTGCCATCCAACACTTGTGGTGAT
CATTGTAGATGCTCGGATGACCCTTTCATTCAAGATGGATATTATTGTGA
TTGCAGAGGATGTGAATTGAGTCCTGTTGTATTGAAAACAGGATGTCAAG
ACTTGTTCAATGCTGGTTTCACGGCCAGTGGAATCTACAGAATCGCACCA
GGAGGTGTCATCATGGATGTGTATTGTGATATGAATTCAACTTATCCTTC
ATCAAACTAGAGACGTGGTGGTTGGGTTGTCATCCAAAAACGTATCGATG
GATCAACTAATTTCTATCGTAATTGGGAAAACTATAAAAATGGTTTTGGA
TATCTTCAAAATGAACATTGGCTTGGGAATGATCAAATTCATGCTTTAAC
AGGTAATGGTGCCAATGAGTTATGGATTGAGATGACCAACTATGAAGGAA
TCACCAAATATGCAAGATTTACCAGTTTCAGTGTCGGCAATGAAGCATCT
AAATACCAACTCTCGGCTTCTGGTTACTCAGGAGATGCTGGTAATAGTTT
GGC
Run BLAST on NCBI

protein sequence of TCONS_00037022-protein

>TCONS_00037022-protein ID=TCONS_00037022-protein|Name=TCONS_00037022-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
VTASLRCPGVCNRGGVSKREGYCSSLPSNTCGDHCRCSDDPFIQDGYYCD
CRGCELSPVVLKTGCQDLFNAGFTASGIYRIAPGGVIMDVYCDMNSTYPS
SN
Run BLAST on NCBI

transcript from alignment at sc0001555:53246..53848

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037022 ID=TCONS_00037022|Name=TCONS_00037022|organism=Clytia hemisphaerica|type=transcript|length=603bp|location=Sequence derived from alignment at sc0001555:53246..53848 (Clytia hemisphaerica)
GCCAAACTATTACCAGCATCTCCTGAGTAACCAGAAGCCGAGAGTTGGTA
TTTAGATGCTTCATTGCCGACACTGAAACTGGTAAATCTTGCATATTTGG
TGATTCCTTCATAGTTGGTCATCTCAATCCATAACTCATTGGCACCATTA
CCTGTTAAAGCATGAATTTGATCATTCCCAAGCCAATGTTCATTTTGAAG
ATATCCAAAACCATTTTTATAGTTTTCCCAATTACGATAGAAATTAGTTG
ATCCATCGATACGTTTTTGGATGACAACCCAACCACCACGTCTCTAGTTT
GATGAAGGATAAGTTGAATTCATATCACAATACACATCCATGATGACACC
TCCTGGTGCGATTCTGTAGATTCCACTGGCCGTGAAACCAGCATTGAACA
AGTCTTGACATCCTGTTTTCAATACAACAGGACTCAATTCACATCCTCTG
CAATCACAATAATATCCATCTTGAATGAAAGGGTCATCCGAGCATCTACA
ATGATCACCACAAGTGTTGGATGGCAAAGATGAACAGTAGCCTTCTCTCT
TGGAAACACCACCTCGGTTGCAAACGCCTGGACACCTCAAAGATGCAGTT
ACC

Coding sequence (CDS) from alignment at sc0001555:53246..53848

>TCONS_00037022 ID=TCONS_00037022|Name=TCONS_00037022|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at sc0001555:53246..53848 (Clytia hemisphaerica)
CTAGTTTGATGAAGGATAAGTTGAATTCATATCACAATACACATCCATGA
TGACACCTCCTGGTGCGATTCTGTAGATTCCACTGGCCGTGAAACCAGCA
TTGAACAAGTCTTGACATCCTGTTTTCAATACAACAGGACTCAATTCACA
TCCTCTGCAATCACAATAATATCCATCTTGAATGAAAGGGTCATCCGAGC
ATCTACAATGATCACCACAAGTGTTGGATGGCAAAGATGAACAGTAGCCT
TCTCTCTTGGAAACACCACCTCGGTTGCAAACGCCTGGACACCTCAAAGA
TGCAGTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021877XLOC_021877Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037022-proteinTCONS_00037022-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037022-exon-sc0001555-1491911889:53246..53848TCONS_00037022-exon-sc0001555-1491911889:53246..53848Clytia hemisphaericaexon
TCONS_00037022-exon-sc0001555-1510915933:53246..53848TCONS_00037022-exon-sc0001555-1510915933:53246..53848Clytia hemisphaericaexon
TCONS_00037022-exon-sc0001555-1575043694:53246..53848TCONS_00037022-exon-sc0001555-1575043694:53246..53848Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001555supercontigsc0001555:53246..53848 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.147287	0	0	0	0	0	0	0	0	0	0	0.669654	1.28887	0.0704457	0	1.22158	0.458274	0.153711	0	0	0	0	0	0.0966774	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014716Fibrinogen_a/b/g_C_1
IPR002181Fibrinogen_a/b/g_C_dom
Blast
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BLAST of TCONS_00037022 vs. Swiss-Prot (Human)
Match: FCN1 (Ficolin-1 OS=Homo sapiens GN=FCN1 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 8.213e-32
Identity = 61/138 (44.20%), Postives = 86/138 (62.32%), Query Frame = 2 
Query:  194 CQDLFNAGFTASGIYRI-APGGVIMDVYCDMNSTYPSSN*RRGGWVVIQKRIDGSTNFYRNWENYKNGFGYLQNEHWLGNDQIHALTGNGANELWIEMTNYEGITKYARFTSFSVGNEASKYQLSASGY-SGDAGNSL 601
            C+DL + G+  SG + I  P    + V CDM++         GGW V Q+R+DGS +FYR+W  YK GFG    E WLGND IHALT  G++EL +++ ++EG  ++A++ SF V +EA KY+L    +  G AGNSL
Sbjct:  118 CKDLLDRGYFLSGWHTIYLPDCRPLTVLCDMDTD-------GGGWTVFQRRMDGSVDFYRDWAAYKQGFGSQLGEFWLGNDNIHALTAQGSSELRVDLVDFEGNHQFAKYKSFKVADEAEKYKLVLGAFVGGSAGNSL 248
The following BLAST results are available for this feature:
BLAST of TCONS_00037022 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FCN18.213e-3244.20Ficolin-1 OS=Homo sapiens GN=FCN1 PE=1 SV=2[more]
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