TCONS_00037021 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037021
Unique NameTCONS_00037021
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length626

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037021 ID=TCONS_00037021|Name=TCONS_00037021|organism=Clytia hemisphaerica|type=transcript|length=626bp
CAAATTCATGCTTTAACAGATAATGGTGCCAACGAGTTATGGATTGAATT
AACCGATTTCAAAGGAGTCACCAAttatgcaagatacaccagttTCAACA
TTGGCAATGAAGAATCTAAATACCAGCTTTCTATCGGTGGATACTCAGGA
GATGCTGGCGATCAATTGACGTCAAAACATAATGGTCGCCGGTTTAGCAC
TTATGACCGCGACAATGATGCATGGAGAAAAAGTTGTGCTCAACGATATT
TAGGTGCTTGGTGGTATAGTGACTGCCACCATAGTAATTTGAAtggcaaa
tatttttttgacgtTGCCAACCCTCATGGAAAAGGAATCCATTGGGTTAA
ATTAACTGGAGCATTCGAATCGCTCAGATCTGTCACAATGAAAATCAGAT
GAAGAAGTTGAGGAAGATCAGCCTTGGTCAATGTCATATTTTTGAGCAAC
ATTCTTAGAATGAGAGACTTTGAGAACTTTTGAGACCTTGTTAGTCATTA
ATCATTAAGCAATCTTTGTAATTCCATTCATTTTAGCTGTGTACCTcctt
gagtttaaagcccgaaaggctagagtagaatctctaacctttcccaggca
agaaaaagtgaagccacttatttctc
Run BLAST on NCBI

protein sequence of TCONS_00037021-protein

>TCONS_00037021-protein ID=TCONS_00037021-protein|Name=TCONS_00037021-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
QIHALTDNGANELWIELTDFKGVTNYARYTSFNIGNEESKYQLSIGGYSG
DAGDQLTSKHNGRRFSTYDRDNDAWRKSCAQRYLGAWWYSDCHHSNLNGK
YFFDVANPHGKGIHWVKLTGAFESLRSVTMKIR
Run BLAST on NCBI

transcript from alignment at sc0001555:51525..52150

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037021 ID=TCONS_00037021|Name=TCONS_00037021|organism=Clytia hemisphaerica|type=transcript|length=626bp|location=Sequence derived from alignment at sc0001555:51525..52150 (Clytia hemisphaerica)
gagaaataagtggcttcactttttcttgcctgggaaaggttagagattct
actctagcctttcgggctttaaactcaaggAGGTACACAGCTAAAATGAA
TGGAATTACAAAGATTGCTTAATGATTAATGACTAACAAGGTCTCAAAAG
TTCTCAAAGTCTCTCATTCTAAGAATGTTGCTCAAAAATATGACATTGAC
CAAGGCTGATCTTCCTCAACTTCTTCATCTGATTTTCATTGTGACAGATC
TGAGCGATTCGAATGCTCCAGTTAATTTAACCCAATGGATTCCTTTTCCA
TGAGGGTTGGCAacgtcaaaaaaatatttgccaTTCAAATTACTATGGTG
GCAGTCACTATACCACCAAGCACCTAAATATCGTTGAGCACAACTTTTTC
TCCATGCATCATTGTCGCGGTCATAAGTGCTAAACCGGCGACCATTATGT
TTTGACGTCAATTGATCGCCAGCATCTCCTGAGTATCCACCGATAGAAAG
CTGGTATTTAGATTCTTCATTGCCAATGTTGAaactggtgtatcttgcat
aaTTGGTGACTCCTTTGAAATCGGTTAATTCAATCCATAACTCGTTGGCA
CCATTATCTGTTAAAGCATGAATTTG

Coding sequence (CDS) from alignment at sc0001555:51525..52150

>TCONS_00037021 ID=TCONS_00037021|Name=TCONS_00037021|organism=Clytia hemisphaerica|type=CDS|length=402bp|location=Sequence derived from alignment at sc0001555:51525..52150 (Clytia hemisphaerica)
TCATCTGATTTTCATTGTGACAGATCTGAGCGATTCGAATGCTCCAGTTA
ATTTAACCCAATGGATTCCTTTTCCATGAGGGTTGGCAacgtcaaaaaaa
tatttgccaTTCAAATTACTATGGTGGCAGTCACTATACCACCAAGCACC
TAAATATCGTTGAGCACAACTTTTTCTCCATGCATCATTGTCGCGGTCAT
AAGTGCTAAACCGGCGACCATTATGTTTTGACGTCAATTGATCGCCAGCA
TCTCCTGAGTATCCACCGATAGAAAGCTGGTATTTAGATTCTTCATTGCC
AATGTTGAaactggtgtatcttgcataaTTGGTGACTCCTTTGAAATCGG
TTAATTCAATCCATAACTCGTTGGCACCATTATCTGTTAAAGCATGAATT
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021876XLOC_021876Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037021-exon-sc0001555-1491911889:51525..52150TCONS_00037021-exon-sc0001555-1491911889:51525..52150Clytia hemisphaericaexon
TCONS_00037021-exon-sc0001555-1510915933:51525..52150TCONS_00037021-exon-sc0001555-1510915933:51525..52150Clytia hemisphaericaexon
TCONS_00037021-exon-sc0001555-1575043694:51525..52150TCONS_00037021-exon-sc0001555-1575043694:51525..52150Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037021-proteinTCONS_00037021-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001555supercontigsc0001555:51525..52150 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.583357	0.198869	0	0	0.194983	0.11482	0	0.146139	0	0.175986	0.176045	0.305116	0.18089	0.0497791	0.0529194	1.49563	2.04931	0.647175	0.386191	0.0847368	0	0	0.269609	0.189994	0.17464	0.117704	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014715Fibrinogen_a/b/g_C_2
IPR014716Fibrinogen_a/b/g_C_1
IPR020837Fibrinogen_CS
Blast
[Close]
BLAST of TCONS_00037021 vs. Swiss-Prot (Human)
Match: FBCD1 (Fibrinogen C domain-containing protein 1 OS=Homo sapiens GN=FIBCD1 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 3.226e-31
Identity = 66/138 (47.83%), Postives = 82/138 (59.42%), Query Frame = 1 
Query:    1 QIHALTDNGANELWIELTDFKGVTNYARYTSFNIG-----NEESKYQLSIGGYSGDAGDQLTSKHNGRRFSTYDRDNDAWRKSCAQRYLGAWWYSDCHHSNLNGKYFFDVANPHGKGIHWVKLTGAFESLRSVTMKIR 399
            +IHALT   A EL ++L DF+  T YARY SF +G      EE  Y L++  YSG AGD L  KH+G RF+T DRD+D    +CA  Y GAWWY +CH SNLNG+Y       +  G+ W   TG   SL+   MKIR
Sbjct:  319 RIHALTTQAAYELHVDLEDFENGTAYARYGSFGVGLFSVDPEEDGYPLTVADYSGTAGDSLL-KHSGMRFTTKDRDSDHSENNCAAFYRGAWWYRNCHTSNLNGQYLRGAHASYADGVEWSSWTGWQYSLKFSEMKIR 455
The following BLAST results are available for this feature:
BLAST of TCONS_00037021 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBCD13.226e-3147.83Fibrinogen C domain-containing protein 1 OS=Homo s... [more]
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