TCONS_00037020 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037020
Unique NameTCONS_00037020
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length443

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037020 ID=TCONS_00037020|Name=TCONS_00037020|organism=Clytia hemisphaerica|type=transcript|length=443bp
GCTAAGTTCCGAATTCCGGAAATCAGTCAGTTCCGGATGGAAAGGGCCAA
TACCGGAATACGGAAAACTATACGGAACTCCAAAAGTAAAATGGCCCTGG
AGCAAACAGAGGGCAAATGGAGGCTAGAAATAGAGTATGAAGCCAATACG
ACCAAAGGACGAAATGTAATGCCCAAAAGACTAACGGTCTGTGACCAGAA
AAATAGCTAGGAAAATGACTCCAAAATCGACTAAACAAAAGTCACAGACC
AGGTCAAAAGGCGACcaaaattcaaggaaaaatctaaagaatcctaGGGA
ATCTAGTAccaaaaaaatctacaaaaataggaaaaattacaagtcaaaaa
tataggaaaaacTTACTGAAACATAAGCTCCAAAGCACTGTGTATGGATG
GCTCCACAGGAaataccaaaataaattctcaagtaaatccaaa
Run BLAST on NCBI

transcript from alignment at sc0001555:41516..41958

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037020 ID=TCONS_00037020|Name=TCONS_00037020|organism=Clytia hemisphaerica|type=transcript|length=443bp|location=Sequence derived from alignment at sc0001555:41516..41958 (Clytia hemisphaerica)
tttggatttacttgagaatttattttggtattTCCTGTGGAGCCATCCAT
ACACAGTGCTTTGGAGCTTATGTTTCAGTAAgtttttcctatatttttga
cttgtaatttttcctatttttgtagatttttttggTACTAGATTCCCtag
gattctttagatttttccttgaattttgGTCGCCTTTTGACCTGGTCTGT
GACTTTTGTTTAGTCGATTTTGGAGTCATTTTCCTAGCTATTTTTCTGGT
CACAGACCGTTAGTCTTTTGGGCATTACATTTCGTCCTTTGGTCGTATTG
GCTTCATACTCTATTTCTAGCCTCCATTTGCCCTCTGTTTGCTCCAGGGC
CATTTTACTTTTGGAGTTCCGTATAGTTTTCCGTATTCCGGTATTGGCCC
TTTCCATCCGGAACTGACTGATTTCCGGAATTCGGAACTTAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021875XLOC_021875Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037020-exon-sc0001555-1491911889:41516..41958TCONS_00037020-exon-sc0001555-1491911889:41516..41958Clytia hemisphaericaexon
TCONS_00037020-exon-sc0001555-1510915933:41516..41958TCONS_00037020-exon-sc0001555-1510915933:41516..41958Clytia hemisphaericaexon
TCONS_00037020-exon-sc0001555-1575043694:41516..41958TCONS_00037020-exon-sc0001555-1575043694:41516..41958Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001555supercontigsc0001555:41516..41958 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.25047	1.10822	0.224203	1.46226	2.60036	1.14998	1.75116	2.3337	2.43491	4.7156	3.20556	3.03989	2.60236	3.70703	0	0.219162	0.227633	0.41361	0	0.718932	0.686882	0.442263	0.988161	0.212071	1.90432	2.57233	0.315032	0.931775	1.99601	0.773208
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037020 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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