TCONS_00037019 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037019
Unique NameTCONS_00037019
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length702

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037019 ID=TCONS_00037019|Name=TCONS_00037019|organism=Clytia hemisphaerica|type=transcript|length=702bp
AGTATTTGACCCTCTGGGCTTCCTAGCACCATTCACACTCAAAGCTAAAC
TGATTCTTCAAGATTTATGGCGTTTGAAAGTCAATTGGGATGAACCACTA
GACGTCAAGACGAACGAAGTTTGGTCACAATGGCTAAAGGAGTTGTCACA
ACTATCAAAATCAATCTGCATCCCCAGAAGTCTGGATCTAATCCCTGAAT
CATCTCAACTTGTTCAGCTACATGTCTTCTGCGATGCTTCAGAAAGAGCC
TTCGCTGCAACTGCCTACATACGAGTCGAAGAATGCGGCGCTGTTCGTGT
TCACATCATTATGGCAAAGACCAGAGTTGcaccaataaaacaaatatcTT
CACCACGCCTCGAACTGCAAGGAGCAGTGACGGCGGTGCGAATCAAAGAA
ACGATCAACAAAGAATTCGACCACGACTTCGAGCAGACCATCTTCTGGAC
TGACTCGACGCTGAACCTGCAATGCATCAACAATGAGGAGAGAAGGTTCA
GAACATTTGTGGCCAACCGTATTTCTTAAATACGAGAGCATTCCGAAGTA
TCCCAATGGAAGTTTGTTCCCGGAAAGACAAACTCATCAGACTTAGCTAC
AAGAGAGGAAGGGTTGAAAGCAGTAGAAGACGATGTATGGCTCAACGGTC
CAGCGTACCTTAGGCTACCTGAATCGGAATGGCCATCAATCCCGAAGATT
CC
Run BLAST on NCBI

protein sequence of TCONS_00037019-protein

>TCONS_00037019-protein ID=TCONS_00037019-protein|Name=TCONS_00037019-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
VFDPLGFLAPFTLKAKLILQDLWRLKVNWDEPLDVKTNEVWSQWLKELSQ
LSKSICIPRSLDLIPESSQLVQLHVFCDASERAFAATAYIRVEECGAVRV
HIIMAKTRVAPIKQISSPRLELQGAVTAVRIKETINKEFDHDFEQTIFWT
DSTLNLQCINNEERRFRTFVANRIS
Run BLAST on NCBI

transcript from alignment at sc0001555:37491..38192

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037019 ID=TCONS_00037019|Name=TCONS_00037019|organism=Clytia hemisphaerica|type=transcript|length=702bp|location=Sequence derived from alignment at sc0001555:37491..38192 (Clytia hemisphaerica)
GGAATCTTCGGGATTGATGGCCATTCCGATTCAGGTAGCCTAAGGTACGC
TGGACCGTTGAGCCATACATCGTCTTCTACTGCTTTCAACCCTTCCTCTC
TTGTAGCTAAGTCTGATGAGTTTGTCTTTCCGGGAACAAACTTCCATTGG
GATACTTCGGAATGCTCTCGTATTTAAGAAATACGGTTGGCCACAAATGT
TCTGAACCTTCTCTCCTCATTGTTGATGCATTGCAGGTTCAGCGTCGAGT
CAGTCCAGAAGATGGTCTGCTCGAAGTCGTGGTCGAATTCTTTGTTGATC
GTTTCTTTGATTCGCACCGCCGTCACTGCTCCTTGCAGTTCGAGGCGTGG
TGAAgatatttgttttattggtgCAACTCTGGTCTTTGCCATAATGATGT
GAACACGAACAGCGCCGCATTCTTCGACTCGTATGTAGGCAGTTGCAGCG
AAGGCTCTTTCTGAAGCATCGCAGAAGACATGTAGCTGAACAAGTTGAGA
TGATTCAGGGATTAGATCCAGACTTCTGGGGATGCAGATTGATTTTGATA
GTTGTGACAACTCCTTTAGCCATTGTGACCAAACTTCGTTCGTCTTGACG
TCTAGTGGTTCATCCCAATTGACTTTCAAACGCCATAAATCTTGAAGAAT
CAGTTTAGCTTTGAGTGTGAATGGTGCTAGGAAGCCCAGAGGGTCAAATA
CT

Coding sequence (CDS) from alignment at sc0001555:37491..38192

>TCONS_00037019 ID=TCONS_00037019|Name=TCONS_00037019|organism=Clytia hemisphaerica|type=CDS|length=528bp|location=Sequence derived from alignment at sc0001555:37491..38192 (Clytia hemisphaerica)
TTAAGAAATACGGTTGGCCACAAATGTTCTGAACCTTCTCTCCTCATTGT
TGATGCATTGCAGGTTCAGCGTCGAGTCAGTCCAGAAGATGGTCTGCTCG
AAGTCGTGGTCGAATTCTTTGTTGATCGTTTCTTTGATTCGCACCGCCGT
CACTGCTCCTTGCAGTTCGAGGCGTGGTGAAgatatttgttttattggtg
CAACTCTGGTCTTTGCCATAATGATGTGAACACGAACAGCGCCGCATTCT
TCGACTCGTATGTAGGCAGTTGCAGCGAAGGCTCTTTCTGAAGCATCGCA
GAAGACATGTAGCTGAACAAGTTGAGATGATTCAGGGATTAGATCCAGAC
TTCTGGGGATGCAGATTGATTTTGATAGTTGTGACAACTCCTTTAGCCAT
TGTGACCAAACTTCGTTCGTCTTGACGTCTAGTGGTTCATCCCAATTGAC
TTTCAAACGCCATAAATCTTGAAGAATCAGTTTAGCTTTGAGTGTGAATG
GTGCTAGGAAGCCCAGAGGGTCAAATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021874XLOC_021874Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037019-proteinTCONS_00037019-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037019-exon-sc0001555-1491911889:37491..38192TCONS_00037019-exon-sc0001555-1491911889:37491..38192Clytia hemisphaericaexon
TCONS_00037019-exon-sc0001555-1510915933:37491..38192TCONS_00037019-exon-sc0001555-1510915933:37491..38192Clytia hemisphaericaexon
TCONS_00037019-exon-sc0001555-1575043694:37491..38192TCONS_00037019-exon-sc0001555-1575043694:37491..38192Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001555supercontigsc0001555:37491..38192 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.00748	0.771928	2.4444	1.91317	0.679323	0.0766871	0.555119	0.259848	0.303209	0.525803	0.145816	0.670977	0.287162	0.248517	0.326904	0.306965	0.270112	0.276856	0.382491	0.0837177	0.417467	0.509065	0.330045	0.300059	0	0.0689558	0.412787	0.315928	0.0798733	0.325513
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008042Retrotrans_Pao
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037019 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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