TCONS_00037016 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037016
Unique NameTCONS_00037016
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length729

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037016 ID=TCONS_00037016|Name=TCONS_00037016|organism=Clytia hemisphaerica|type=transcript|length=729bp
aatcctcactgcaaaaatttatgctatttttcccatcccaattgaatttt
ctgactttataTGAATCCCCGGTCataaaaaataaggaaataacAATCCC
CATCtcgttttggtccgttatttttacccccactggctgaaaagattcta
ccggatctgtgagaaggggatgtacagaattataaattttctgtACAagt
tcatttatttatttaaggATTAAAGCAGACGGGACAGAATGTCGATCATC
AGCAGAAGTCTTTCGTAATCACTTTCAAACCCTCTATAATCGACATCCAG
TCTTCAACTCAAACATCCTAGACTCTCTAGACCAGTGTCCGATTGATGAT
TCGTTGGGCTTCGTGCCATCTACTGGTGAAGTACACAACGCTATAAACCA
CCTCAAAAACAATGCTCCTGGTGAAACAGGAGTTACTGCTCAAATGCTCA
AATCAATTGCTCAAGatagtgtttgttttgattacttATACCAAATTATC
ATTGTTATATGGATAAATGAAGCTCAATTGGATACCGGTCGTCTCGTAAC
ATTACCAGAGAAAGGTAATCTTAGTAAACCTGGAAACTACAGAGGCATCA
TGCTGTTCGAGATTGCATATAAAATTACGGCCATCGTTATTAATAAGAGA
ATTCAACCGCTCATTGAACAGCTCTATCATGAAAATCAATGTGGTTTCAG
AAGGGGTCGTGGCTGTACCGGCGCAGTTT
Run BLAST on NCBI

transcript from alignment at sc0001551:28505..29233

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037016 ID=TCONS_00037016|Name=TCONS_00037016|organism=Clytia hemisphaerica|type=transcript|length=729bp|location=Sequence derived from alignment at sc0001551:28505..29233 (Clytia hemisphaerica)
AAACTGCGCCGGTACAGCCACGACCCCTTCTGAAACCACATTGATTTTCA
TGATAGAGCTGTTCAATGAGCGGTTGAATTCTCTTATTAATAACGATGGC
CGTAATTTTATATGCAATCTCGAACAGCATGATGCCTCTGTAGTTTCCAG
GTTTACTAAGATTACCTTTCTCTGGTAATGTTACGAGACGACCGGTATCC
AATTGAGCTTCATTTATCCATATAACAATGATAATTTGGTATaagtaatc
aaaacaaacactatCTTGAGCAATTGATTTGAGCATTTGAGCAGTAACTC
CTGTTTCACCAGGAGCATTGTTTTTGAGGTGGTTTATAGCGTTGTGTACT
TCACCAGTAGATGGCACGAAGCCCAACGAATCATCAATCGGACACTGGTC
TAGAGAGTCTAGGATGTTTGAGTTGAAGACTGGATGTCGATTATAGAGGG
TTTGAAAGTGATTACGAAAGACTTCTGCTGATGATCGACATTCTGTCCCG
TCTGCTTTAATccttaaataaataaatgaactTGTacagaaaatttataa
ttctgtacatccccttctcacagatccggtagaatcttttcagccagtgg
gggtaaaaataacggaccaaaacgaGATGGGGATTgttatttccttattt
tttatGACCGGGGATTCAtataaagtcagaaaattcaattgggatgggaa
aaatagcataaatttttgcagtgaggatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021871XLOC_021871Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037016-exon-sc0001551-1491911889:28505..29233TCONS_00037016-exon-sc0001551-1491911889:28505..29233Clytia hemisphaericaexon
TCONS_00037016-exon-sc0001551-1510915933:28505..29233TCONS_00037016-exon-sc0001551-1510915933:28505..29233Clytia hemisphaericaexon
TCONS_00037016-exon-sc0001551-1575043694:28505..29233TCONS_00037016-exon-sc0001551-1575043694:28505..29233Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001551supercontigsc0001551:28505..29233 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.968535	0	0	0	0.0718877	0.0430815	0	0.0129179	0.0168124	0.0302277	0	0	0	0.133454	0.225286	0	0.133157	0.0138674	0.206348	0	0	0	0.164431	0.124103	0	0	0.220746	0	0.167102	0.32337
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037016 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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