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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037015 ID=TCONS_00037015|Name=TCONS_00037015|organism=Clytia hemisphaerica|type=transcript|length=2536bp
aatcctcactgcaaaaatttatgctatttttcccatcccaattgaatttt
ctgactttataTGAATCCCCGGTCataaaaaataaggaaataacAATCCC
CATCtcgttttggtccgttatttttacccccactggctgaaaagattcta
ccggatctgtgagaaggggatgtacagaattataaattttctgtACAagt
tcatttatttatttaaggATTAAAGCAGACGGGACAGAATGTCGATCATC
AGCAGAAGTCTTTCGTAATCACTTTCAAACCCTCTATAATCGACATCCAG
TCTTCAACTCAAACATCCTAGACTCTCTAGACCAGTGTCCGATTGATGAT
TCGTTGGGCTTCGTGCCATCTACTGGTGAAGTACACAACGCTATAAACCA
CCTCAAAAACAATGCTCCTGGTGAAACAGGAGTTACTGCTCAAATGCTCA
AATCAATTGCTCAAGatagtgtttgttttgattacttATACCAAATTATC
ATTGTTATATGGATAAATGAAGCTCAATTGGATACCGGTCGTCTCGTAAC
ATTACCAGAGAAAGGTAATCTTAGTAAACCTGGAAACTACAGAGGCATCA
TGCTGTTCGAGATTGCATATAAAATTACGGCCATCGTTATTAATAAGAGA
ATTCAACCGCTCATTGAACAGCTCTATCATGAAAATCAATGTGGTTTCAG
AAGGGGTCGTGGCTGTACCGGCGCAGTTTNAGAGAATTCAACCGCTCATT
GAACAGTTCTATCATGAAAATCAATGTGGGTTCAGAAGGGGTCGTGGCTG
TACCGGCGCTGTTTTTACTGTAAAAATTTCTATCAAGAAACGTCGTGAGC
ATAACCTTGAAACatggtttttatttttggacctgGATAAGGTTTTTGAC
AGGGTCCCTCGTCCACTTTTATGGTACATTTTAACCAAATTTGGTGTCAC
TAAGAAATTGATTGACGTCTTAAAATTGCTACATTAAAACTTCCAAATTA
CATTTGGTGTTAAATCTGTTACCCATATCATGCCTTGTACTATCGGTGTG
AAGCTGTGAAGCAAGGTGATGTACGCGGGCCAGcttatttatcattttca
tagACGCTGTTATGATGACATGGAGGAAAATCCACAATCGCCCACTCTGT
ATCTTTAGAACAAAAAACGATTACAAACTCACAGGCAAACGATATAATTT
TAAAGGAACTGACTTTGACGTTGATGACTCTGAGTATGCAGATGATACTG
CAGTATGCggcgtgctttggctgaaagtgtgccgaggttaggtaggattt
cacgtgacattacaaaagaatttcagcgcttgactaATAAGAAGTTTCgc
aggttttcaaaaacaatatcagcaatattttttgcagtattcactttttt
ttttgcttggaagagctcaAGGCACGACatctaacccttcgggctttaaa
tcTGTGACTGCAGTTCTGCTGTTCATCCCGAAGAGACATCGAATGCTATT
CACCACTTTTGGTCGAACATTTTGACCGTTGGAATAAAGATTGTTGAAGA
TTATAATACGCCTGATAAACCATCAAAGAAATTCTTTTCGTTAGCAGACC
TCTAAAAAACTACACTGATCCCAAATCTTTCGACAATACCAACCTTACGA
CCTTGGAAATCAAATTTTTCCCAATCACCGACAAATTCTGCTATTTAGGa
actttcttttcaagaaattcTTAAGATGAATTTGATGTTAAGCATAGAAT
TCGTAAAGCAGGTAATGCTTTTGGTTCTTTGAGAAAAGCACTCCTTTCAA
TCCGCTCGATATTGCACCAGGCAAAGAGTTCTGCCTATCAATCGCTCATC
TTCTGATTCTTCTACTGAAACGTGGTGTCTCACAGAGAAGCTTCTTACAT
CCCTTAGAAACTTTCACCACCATGTGTCGAGTAAACCGTACACAAGTATA
TACCCACAGGATTAGCACCGAAAGCCTTTTACAACGTTTATCTCTCAAAA
AGATTGATAATTATGTCACCTCTCGCCAGCTTACTCGGCTTGGGAATGTT
GCGCAAATGCCCTTTGATAGACTGCCACGCAAGCTTCTCTCGTCTTTTCT
CTTTCGTAATCGTCGTCCAAAAGGAGCTTCAGAATTTACATATGACCGAG
GCATTTAGAAAGCTTTAAGAAAAGTTAATGTTGATTGGTATGATATGGCA
CTGGATAGAATTATCTGGAATGGTGTGCTAAATGGTGTAATTGGTGTCTG
ATATGTTTaatatttgaaattgaaatttttagctactattttatttttac
cAACATTTCTAGCGAAGtgatttctaaaatattctaatatttttagATCA
TTTTCTTGGCCAGTTCCCCTGATGGGATGGTTCATCTCTCTTTCCCATCA
GCTCTTATAACTTCCTCTATCGCTTAGTCGCGAAATACTTAAGCGAGACA
CCTGATAAAAGTCTAGCCAtaacaagaaaaataatgcGTCGATCACTAAA
TTCTTTATACCTGCTGTATTTCCGGCATGGGGGGNN Run BLAST on NCBI protein sequence of TCONS_00037015-protein >TCONS_00037015-protein ID=TCONS_00037015-protein|Name=TCONS_00037015-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
MLKSIAQDSVCFDYLYQIIIVIWINEAQLDTGRLVTLPEKGNLSKPGNYR
GIMLFEIAYKITAIVINKRIQPLIEQLYHENQCGFRRGRGCTGAVXENST
AH Run BLAST on NCBI transcript from alignment at sc0001551:26698..29233 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037015 ID=TCONS_00037015|Name=TCONS_00037015|organism=Clytia hemisphaerica|type=transcript|length=2536bp|location=Sequence derived from alignment at sc0001551:26698..29233 (Clytia hemisphaerica)
NNCCCCCCATGCCGGAAATACAGCAGGTATAAAGAATTTAGTGATCGACg
cattatttttcttgttaTGGCTAGACTTTTATCAGGTGTCTCGCTTAAGT
ATTTCGCGACTAAGCGATAGAGGAAGTTATAAGAGCTGATGGGAAAGAGA
GATGAACCATCCCATCAGGGGAACTGGCCAAGAAAATGATctaaaaatat
tagaatattttagaaatcaCTTCGCTAGAAATGTTggtaaaaataaaata
gtagctaaaaatttcaatttcaaatattAAACATATCAGACACCAATTAC
ACCATTTAGCACACCATTCCAGATAATTCTATCCAGTGCCATATCATACC
AATCAACATTAACTTTTCTTAAAGCTTTCTAAATGCCTCGGTCATATGTA
AATTCTGAAGCTCCTTTTGGACGACGATTACGAAAGAGAAAAGACGAGAG
AAGCTTGCGTGGCAGTCTATCAAAGGGCATTTGCGCAACATTCCCAAGCC
GAGTAAGCTGGCGAGAGGTGACATAATTATCAATCTTTTTGAGAGATAAA
CGTTGTAAAAGGCTTTCGGTGCTAATCCTGTGGGTATATACTTGTGTACG
GTTTACTCGACACATGGTGGTGAAAGTTTCTAAGGGATGTAAGAAGCTTC
TCTGTGAGACACCACGTTTCAGTAGAAGAATCAGAAGATGAGCGATTGAT
AGGCAGAACTCTTTGCCTGGTGCAATATCGAGCGGATTGAAAGGAGTGCT
TTTCTCAAAGAACCAAAAGCATTACCTGCTTTACGAATTCTATGCTTAAC
ATCAAATTCATCTTAAgaatttcttgaaaagaaagttCCTAAATAGCAGA
ATTTGTCGGTGATTGGGAAAAATTTGATTTCCAAGGTCGTAAGGTTGGTA
TTGTCGAAAGATTTGGGATCAGTGTAGTTTTTTAGAGGTCTGCTAACGAA
AAGAATTTCTTTGATGGTTTATCAGGCGTATTATAATCTTCAACAATCTT
TATTCCAACGGTCAAAATGTTCGACCAAAAGTGGTGAATAGCATTCGATG
TCTCTTCGGGATGAACAGCAGAACTGCAGTCACAgatttaaagcccgaag
ggttagatGTCGTGCCTtgagctcttccaagcaaaaaaaaaagtgaatac
tgcaaaaaatattgctgatattgtttttgaaaacctgcGAAACTTCTTAT
tagtcaagcgctgaaattcttttgtaatgtcacgtgaaatcctacctaac
ctcggcacactttcagccaaagcacgccGCATACTGCAGTATCATCTGCA
TACTCAGAGTCATCAACGTCAAAGTCAGTTCCTTTAAAATTATATCGTTT
GCCTGTGAGTTTGTAATCGTTTTTTGTTCTAAAGATACAGAGTGGGCGAT
TGTGGATTTTCCTCCATGTCATCATAACAGCGTctatgaaaatgataaat
aagCTGGCCCGCGTACATCACCTTGCTTCACAGCTTCACACCGATAGTAC
AAGGCATGATATGGGTAACAGATTTAACACCAAATGTAATTTGGAAGTTT
TAATGTAGCAATTTTAAGACGTCAATCAATTTCTTAGTGACACCAAATTT
GGTTAAAATGTACCATAAAAGTGGACGAGGGACCCTGTCAAAAACCTTAT
CcaggtccaaaaataaaaaccatGTTTCAAGGTTATGCTCACGACGTTTC
TTGATAGAAATTTTTACAGTAAAAACAGCGCCGGTACAGCCACGACCCCT
TCTGAACCCACATTGATTTTCATGATAGAACTGTTCAATGAGCGGTTGAA
TTCTCTNAAACTGCGCCGGTACAGCCACGACCCCTTCTGAAACCACATTG
ATTTTCATGATAGAGCTGTTCAATGAGCGGTTGAATTCTCTTATTAATAA
CGATGGCCGTAATTTTATATGCAATCTCGAACAGCATGATGCCTCTGTAG
TTTCCAGGTTTACTAAGATTACCTTTCTCTGGTAATGTTACGAGACGACC
GGTATCCAATTGAGCTTCATTTATCCATATAACAATGATAATTTGGTATa
agtaatcaaaacaaacactatCTTGAGCAATTGATTTGAGCATTTGAGCA
GTAACTCCTGTTTCACCAGGAGCATTGTTTTTGAGGTGGTTTATAGCGTT
GTGTACTTCACCAGTAGATGGCACGAAGCCCAACGAATCATCAATCGGAC
ACTGGTCTAGAGAGTCTAGGATGTTTGAGTTGAAGACTGGATGTCGATTA
TAGAGGGTTTGAAAGTGATTACGAAAGACTTCTGCTGATGATCGACATTC
TGTCCCGTCTGCTTTAATccttaaataaataaatgaactTGTacagaaaa
tttataattctgtacatccccttctcacagatccggtagaatcttttcag
ccagtgggggtaaaaataacggaccaaaacgaGATGGGGATTgttatttc
cttattttttatGACCGGGGATTCAtataaagtcagaaaattcaattggg
atgggaaaaatagcataaatttttgcagtgaggatt Coding sequence (CDS) from alignment at sc0001551:26698..29233 >TCONS_00037015 ID=TCONS_00037015|Name=TCONS_00037015|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at sc0001551:26698..29233 (Clytia hemisphaerica)
TCAATGAGCGGTTGAATTCTCTNAAACTGCGCCGGTACAGCCACGACCCC
TTCTGAAACCACATTGATTTTCATGATAGAGCTGTTCAATGAGCGGTTGA
ATTCTCTTATTAATAACGATGGCCGTAATTTTATATGCAATCTCGAACAG
CATGATGCCTCTGTAGTTTCCAGGTTTACTAAGATTACCTTTCTCTGGTA
ATGTTACGAGACGACCGGTATCCAATTGAGCTTCATTTATCCATATAACA
ATGATAATTTGGTATaagtaatcaaaacaaacactatCTTGAGCAATTGA
TTTGAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037015-exon-sc0001551-1491911889:26698..29233 | TCONS_00037015-exon-sc0001551-1491911889:26698..29233 | Clytia hemisphaerica | exon |
| TCONS_00037015-exon-sc0001551-1510915933:26698..29233 | TCONS_00037015-exon-sc0001551-1510915933:26698..29233 | Clytia hemisphaerica | exon |
| TCONS_00037015-exon-sc0001551-1575043694:26698..29233 | TCONS_00037015-exon-sc0001551-1575043694:26698..29233 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001551 | supercontig | sc0001551:26698..29233 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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