TCONS_00037006 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00037006
Unique Name	TCONS_00037006
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	437

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0001551:9700..15730-

transcript sequence

>TCONS_00037006 ID=TCONS_00037006|Name=TCONS_00037006|organism=Clytia hemisphaerica|type=transcript|length=437bp
CTAACATAGAATGACATCGATGGAACACATTCattaatttcttgaaaaaa
ggAGACAACCACCTTAACTGCACAGCTGAATCATGGTAATCAAGAACTAT
CAAGAACTACTGAGCAGTGGAGCTGATTCTGGTATTCAACCAACCCAGCG
AACCACCAAaTGGGAATTGATGAAACTAACGAAAACTGAAATCCTACTGT
AAACACTGTCTATGCCCTTTTGCTTTTGCACTTTGGATGGAATTTGGAGA
CAATTCAGACATGATGATGGAATGGGGAGACAGTGACAGTGTTATCAAAA
GgaCGACGTGTGAAAGCACGCGATGATGGAAGTTATGACGGAAGGCTTTT
TGGATTCAAGTAAAGGAGTAGATGAAAAGTAGAGAAGCTGTTGTTATCGT
TAAAGATTTGCTGCAGAAAGTTTGGTTTTGATCGAGG

Run BLAST on NCBI

transcript from alignment at sc0001551:9700..15730-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00037006 ID=TCONS_00037006|Name=TCONS_00037006|organism=Clytia hemisphaerica|type=transcript|length=6031bp|location=Sequence derived from alignment at sc0001551:9700..15730- (Clytia hemisphaerica)
CTAACATAGAATGACATCGATGGAACACATTCATTAATTTCTTGAAAAAA
GGAGGTAAAAACATCCAAAGTGTTAAAGCCCTAACTAACGGCTAGTTGAT
TTGTAGTTGGTTAGTTAGTGGATTTTAATGGCATTTTACTGGACAGAATT
ATTTTGTATTTACAAAAGTTCTTATTTGTTATCATTTGTTTTTATTTACA
ATAACCATGTGGTTGAATGAATTTTGATCGCGGTTAAATGAATTTATTTA
GTAATAACTATCTCCAATTTTTAGACAACCACCTTAACTGCACAGCTGAA
TCATGGTAATCAAGAACTATCAAGAACTACTGAGCAGTGGAGCTGATTCT
GGTATTCAACCAACCCAGCGAACCACCAAGTAAGTCATTGTATTTCTTTG
ATAATTATGGTAGCATGCTTGGTTTCACCTAGGGACACAACACAACACAA
CACAACGACACAACGATTTATTCAAAAATATATTTTTAATGCACTCAGTG
ATCACAAAACATAAGGTCTTCTACTTTTCTCACAATCACATCTCAAAGAT
CACAAAAATTCAATTTTTGCAGCTTATTAATATGCACACATTTCTTTCCA
GGACGCTTAGGTAAATTAAGTTTAACTTTCAAATTGTTTTAAAAATGTTG
ATGACATCAGCAGAAATTGCAAAAATTTGATTTTCTGCCATTTAGGACGA
TTGGTTGAAACACGGGACTGTTGATATCATAAAGATAAGTTAAAAAGGGC
GCACTATGAAGTTATCGTGACATGACAGACAGACAGAAATTATGATTGAT
AAAATTGGTGGAGTTATCAAAACAAATTTGTTGTCAAAGAGATTTAACAG
TAGGTGAAAATACAGGCCAGATATCAGCAGTCCCGTGTTTCAACCAATCG
TTCCAAGTTAGAGCAGTTGACGGTAGCTTTTTTATACTGAAAAAGGCTTG
CTCATCTCACCCATAAAAAATATTGCCTCACATTGAAATTGTTTGTTGTA
CTGTAATTTGGTAAACACGTGTTAAGCTTTCTCTCAATGTTTTTTCTTCT
TTCTGAAATATCTGGATTATGCATTCTTAAAATAATTGAATCCAACCAAA
ACAATAACAAATAAAGCTACCAGGTCAAGGATTCAAGTGATCACTTTTGT
TTACATTGATGAATTGACTATGTAGACATTTTTAAGGACATGACGTCATG
CTAAATAATAAAAGCCTAAGCATCACAGCAACAAAAAACAAAGGCATATT
AAGTAACACATATACTATATATATTTCATTATTGTTTCCAGACGGTACTA
ATGTGAACGTTCAATTGTGATTGAAGTAATCAATAATGATCGATAATAAT
CGAAGGTGGTCAGTGATTTTATCAGTGATCAAATACTCACTTGACTCCAG
ATTATGGCATTATCTTCGACCATTTTCGATTTCATCAAGCATCTCGATTA
TTTTTCGATTACCTTCAATCATATTGAATACCTTCTATTGTATTGAGTAC
TTTCCAGCCTTTGATTTTATCAAATATGTTTCCAGTAGCAGCGCGTCAAA
ATGAAACCAAGTTTACTTTGGCCAATTAAAACATGCAATTCACGCGCAAA
AACCACTTTCGTTTTCTGTGACCAATTAGAATGTGCGATATGAGTTACTT
GGGGAAACTGATAAACTAGAACCACCAAATACAAGCAACCTTGGTAAACA
AACCCAATGCCTAACTGCTTGCGCCAACGAGACACAGCAGAAAGCTGTCA
TTCACAAATACTTATAGCGTGTAATTTACAGACTATTAAGAAAGCTCCCA
AGCCTACCAGTACCCCTACAAGGATCCCTCACAGGGTACGGATGTCCCTA
ACTGATAGAAACCCAACCCCCGTCTAGGTCCGCAGATTGAAAAATTTCAC
TTGCATCCTGGTGGATGATATCGTCTGCCAACCGTCTGGATTACTACTTC
GATAATCAAATTTATCGATTAGTACCGTCTGGTTGTTTTGATCCTAGAGT
CAGTGGAGCTTTCTAGGGTTACACTTAATTTGCAAAACAATTATTCGATA
GAGTCAATTTTCTTCTTTCCAGATGGGAATTGATGAAACTAACGAAAACT
GAAATCCTACTGTAAACACTGTCTATGCCCTTTTGCTTTTGCACTTTGGA
TGGAATTTGGAGACAATTCAGACATGATGATGGAATGGGGAGACAGTGAC
AGTGTTATCAAAAGGTTAGTTTGCAAACTTTCACCATGCATTGTATATCT
AAAATTATCTAAGAGTCAGAAAGTATGAAAATAACCTACCAAATAATGGA
ACTCCAAACAGTTTTCCCTCACATTATTTTTTTGTGCATGTGCGCATATA
CATTCTGATAAATAACGAGATTGCTCACGGGAATTTCTAACCCGCGCGAG
CAAACCCGCACCTGTCAATCATTTTTATCTGCTTTTCTTTTCACTTGTGG
TTTCGAAAAAAGAGTTTGTAAGATAATAAAAAAAAGACGAAAGTCGATTT
TTATGTATTTTTTTTTAGTTTAAAGTTTTGAAAATACTGGATTTTCAAGA
GAAGGGAAACTCTTGACTCTTGACTCTCCACCCGCTAACCAACCTGATCA
GTTTTGAAATACTGTACTTGAGCCAAACTGCACTGAGGTGATTGACACTA
CTTATAAAATTTTTGTTTCTTAAAAATATAACCGGAATTTCCAAAAATAT
CAATAAGAGCTCATAAAACCAGAAAAAGGTTGGTCAATGCCGACAAATTA
ACACAAACTTCAACGCACCGTATAGGATTCGAACTCTCAAAAATAATGTT
CCCTTACTAGACAGCTCAACGCCTCATCCACTCGGCCACTCAAGATGATA
TATCTTGCTGGCAATGATTAAATATTTTATATCTTTATTTGCCATGACCT
GTATAATTTTTTTTTGCCTCGTGCCCTGTCAAGGTATTAACTTCTTAAAC
AAATGTTTTTAAGATCATTTCCAACATGCGGGAACCGATCACTCATCGAG
ATTTTCAGGACTCTTTAGTCTTTAGTGGGACTGCAGCAAACGGGTTTTAA
ACCCTGCTAGTGCCTGTAAAATAATTTCCATCTGGGGGGTTAGGACACTC
ACCAATCTCCTTGAATTCTCAAAAGACTGAAGAGAGGAGCTTTTTCTTGT
ATACAGTACCCATATACGGCAGACAGAATTCACAGAGCGTACACGCGCGG
GCGGAATGCGGGTCAAAAAATTCCCGTGAGCAATCTCGTTATTTATCAAA
AAGTGCGCATATCTTGGGCTACCATCTTATAAAATTTTTTTTTCTTGCGC
CGCCACAATGTTGAAAAACTTTGTTAAAGGAATTTTTATTACGCACGTGC
GTGCAGCATCACGCGACTAATTTTGATTATTTTGGCTGATTTTCACAACC
AACGAGTTTCTCTATTTGTTTTTGTTAAAGATTTGTGCCATCCCCTGTTT
ACTTTGCATGATAAGATAGAATCACGAGACTGGAATCCATACAAAACAGA
ACTGAAGTAATTTGGAAAAGAGATTATCTAAGTTAGGAAGAGATGGCGGC
GCAAAGTCTCGCAAGTCTGTTTCCATCGATTGCGCGAGCGTGTACGATAC
GCCAAAGTTTCCTTAAATAGCACATTGACATCACAAATTAAATTTCCTCG
TACACAAAATGCGTACGCTTTTGTGCTCTTTTCTACGCTGAAAATTTTCA
ACTTTTTTGAGCGTACAGGAGCAGTGCACATCCCAATCGATAATTTTTCA
ACCAATCAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGGGGGCAATTTTCCTAGGGG
GCAATTTTCTCGGGGGCAATTTTCCGGGGGCAGTTTTCCGGGGGGCAATT
TTCTCGGGGGCAATTTTCCTAGATTCCTATGTTAACAATTTTGGCCTAGC
GTGCACTCTCGCACGATCGATGTAAAAAGGCCTATAAGCACACTTTCTCC
GGTCTATTTTAATATTTTTAGATTTTTTCTTTCAAGAGAAGAATCATTTA
AAGATTTATTTGTTTACAGTCAGTTTTTTTCAATATCAAAGTACCATGGT
TTTAATACTTAATGGTCACTATTTAGAAAATAGATTGGTTGTTTTAGTTA
CTCTAAGATAACAGCCAATCATTAACGCGTCTAAAGAAGCGCAATAAAAC
GCTTCTAGAAAACCAATCGCGTTAGTGCGTTTTTTTTGGCAGCATACAGC
TAATCATTAATGCGAATCTCGGCCAATCATAATAGGCTAATTTGCAAATA
TCATTTTTCGTGAGTGCAATTCTAATTTCTTTTTTTTTTCATCAGGACGA
CGTGTGAAAGCACGCGATGATGGAAGTTATGACGGAAGGCTTTTTGGATT
CAAGTAAAGGAGTAGATGAAAAGTAGAGAAGCTGTTGTTATCGTTAAAGA
TTTGCTGCAGAAAGTTTGGTTTTGATCGAGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_021864	XLOC_021864	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00037006-exon-sc0001551-1575043694:15677..15730	TCONS_00037006-exon-sc0001551-1575043694:15677..15730	Clytia hemisphaerica	exon
TCONS_00037006-exon-sc0001551-1575043694:15352..15456	TCONS_00037006-exon-sc0001551-1575043694:15352..15456	Clytia hemisphaerica	exon
TCONS_00037006-exon-sc0001551-1575043694:13517..13658	TCONS_00037006-exon-sc0001551-1575043694:13517..13658	Clytia hemisphaerica	exon
TCONS_00037006-exon-sc0001551-1575043694:9700..9835	TCONS_00037006-exon-sc0001551-1575043694:9700..9835	Clytia hemisphaerica	exon
TCONS_00037006-exon-sc0001551-1510915933:15677..15730	TCONS_00037006-exon-sc0001551-1510915933:15677..15730	Clytia hemisphaerica	exon
TCONS_00037006-exon-sc0001551-1510915933:15352..15456	TCONS_00037006-exon-sc0001551-1510915933:15352..15456	Clytia hemisphaerica	exon
TCONS_00037006-exon-sc0001551-1510915933:13517..13658	TCONS_00037006-exon-sc0001551-1510915933:13517..13658	Clytia hemisphaerica	exon
TCONS_00037006-exon-sc0001551-1510915933:9700..9835	TCONS_00037006-exon-sc0001551-1510915933:9700..9835	Clytia hemisphaerica	exon
TCONS_00037006-exon-sc0001551-1491911889:15677..15730	TCONS_00037006-exon-sc0001551-1491911889:15677..15730	Clytia hemisphaerica	exon
TCONS_00037006-exon-sc0001551-1491911889:15352..15456	TCONS_00037006-exon-sc0001551-1491911889:15352..15456	Clytia hemisphaerica	exon
TCONS_00037006-exon-sc0001551-1491911889:13517..13658	TCONS_00037006-exon-sc0001551-1491911889:13517..13658	Clytia hemisphaerica	exon
TCONS_00037006-exon-sc0001551-1491911889:9700..9835	TCONS_00037006-exon-sc0001551-1491911889:9700..9835	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001551	supercontig	sc0001551:9700..15730 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.922655	0	0	0	1.52103	0.669737	1.80048	1.33291	0	1.19427	0.788239	0	0	0.756496	0.552545	1.02083	0.0138347	0.426452	1.11978	0.507204	0.605057	0.0174157	0.824699	1.0149	0	1.19281	0.241854	0	0.513292	1.82817e-07

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00037006 vs. Swiss-Prot (Human)

BLAST of TCONS_00037006 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00037006 (transcript) - C. hemisphaerica