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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037004 ID=TCONS_00037004|Name=TCONS_00037004|organism=Clytia hemisphaerica|type=transcript|length=936bp
gaggattggtttaatTAATTactttcagcggggacaaaaattgagtataa
tttcccaccgggacgatattttggccaatttttccagtgggatgggttcc
cagtgggtctgtgagaagggggtgtttttgtAATAGTAAAGACTGATTTA
ACGTATGCTTACCTCTGTTTTGGATTGCATGTGATTTAGTTCTTTCTTCG
CTTTACAGCATGCAttcaaacaaagatggcagatgaTGATTTATAGAATC
ACAGGATTGTCTCAACCTAATTGCCCAGCTCTTCAGAAAAAGCTCCCGAC
ACTTCATCAAAGATGAAACTATTGGGAAACCCTTTTCACAATCAATCCGA
GCCTAATGAACAATATTCTACACATTCAAGGGCGAATTTATTCCGACGGT
CATATTCTGGGGAATGATGGGCTTGTGACACCAATGAACCATTATTAAAG
AATGACCCTTTCTCGATCTCACACACACAGTGCTGAAGAATCAACCGATC
GTCCAAGCATTTCTAATTTGCGAGACCAACAACCGAAAACATTGGTCTTT
GATCCGGGGATGGTTGGTTCGACCGACGACATCCGAAGCTTAAGCTCAAC
GAAAAAGTTTCACGAAATGAAAGACTTGATCCTGGATTTGAAGGAAGGCT
CGTGTGGTCGTTCATACGAAATTTATCAGTACCCAAATTTATGGCTAGAT
GGTTGGACTCCCTGTCTGGTATGACTGTTCAGCTGCTTCCTGAATACTCC
ATATGCAAGTGTAGAAGATAGGAATTTACACCTGTTGTCATGCTGCAATC
GTATCAAGAAGACACAAACAGGAGAAACTTAGAGGCAGATGAAGCGAGAA
AGAAATTCTTCCTTTCCTATTGTTGTTAACTTAAAACTATCCATACTTTC
TAAATAAATCAAGAAGAAATCATTTATTACATTAAC Run BLAST on NCBI transcript from alignment at sc0001551:29317..32919+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037004 ID=TCONS_00037004|Name=TCONS_00037004|organism=Clytia hemisphaerica|type=transcript|length=3603bp|location=Sequence derived from alignment at sc0001551:29317..32919+ (Clytia hemisphaerica)
gaggattggtttaatTAATTactttcagcggggacaaaaattgagtataa
tttcccaccgggacgatattttggccaatttttccagtgggatgggttcc
cagtgggtctgtgagaagggggtgtttttgtAATAGTAAAGACTGATTTA
ACGTATGCTTACCTCTGTTTTGGATTGCATGTGATTTAGTTCTTTCTTCG
CTTTACAGCATGCAttcaaacaaagatggcagatgaTGATTTATAGAATC
ACAGGATTGTCTCAACCTAATTGCCCAGCTCTTCAGGTAAGGCATTAGCC
ACGCAACGACAGTTGAAGCACTACTTATTAAAGATTATGGATNTATTGCC
CAGCTTTTCAGGTAAGTCATTAGCCACGCAACGACAGTTGAAGCACTACt
tgttaaagggataatcagatggtttaaGATATTTGGCTAGTGTAATCTtt
ctattgtcctgagcaaaatctcagaatatttttgcttcactttttacCAA
AGTcgaagtttttgacttttagtgagaaaacaatcgaatttcaacgTACA
AGAACCGTGTGAGaacccattttcagaaatttcaaattttcatatcTCGA
TAAATTGGGAAAAAGTTACCCAAACATACTTTTACTCAAGCCCGCACAAG
CTTTCTGCAGGCcgaatatctcaaaccatctgattatccctttaaagatg
atggattattttgcttcagctaGTGACGGAGAAGCTCTGTTTAGTGTTCT
AagtaagatatctgtggtttgTACAATCGTGTTTGAAGTCCTTGCGGGGG
AATTGTGTATGAGAATGGAAAAAATTATGTCGATGGAATTTGCTGCAGTA
CAGTGTTTTGCTGCCACTAAAAAAAGAAGCCTAATCGTAATGGACTCTTT
TAGCGTTTACGTTTACCAAAAAGACTCGGATAAAATAGGGGTGTATGATT
TGCtaaatttagatttaaatttgatttgttttagCGTTAGTGATTTGTTA
attaaaaattcttttattcGTTTCAGAAAAAGCTCCCGACACTTCATCAA
AGATGAAACTATTGGGAAACCCTTTTCACAATCAATCCGAGCCTAATGAA
CAATATTCTACACATTCAAGGGCGAATTTATTCCGACGGTCATATTCTGG
GGAATGATGGGCTTGTGACACCAATGAACCATTATTAAAGAATGACCCTT
TCTCGATCTCACACACACAGTGCTGAAGAATCAACCGATCGTCCAAGCAT
TTCTAATTTGCGAGACCAACAACCGAAAACATTGGTAATAAGATATAATC
GTGGGGGTTAGTGCACTAGGTGTTCTCCCATGCGGTAGCTGTAATGAGAC
CTTTCGTGCTTATTATAAGAATTCAAGGCTAGGCTAAAACGTAGGTCTTT
GACAATGAGGTAAAAGAGTCGAATTTCCAAAGATATAAACCGTTAATTTA
CGCCACATAGTAGTCAATATGAACAGGACCTTTTTGTTAGCCGGCATCTT
GAATTTTTCATCCATCTCCTTTTAAGGGAACGCTTACCATTTCGATACAA
TATTGCTGAACTACCAGAATTCGAAAATGTAAAAggcaaaaaacaaacaa
attgatagattcaatctgtcgtctgAATTATGGCGCACATCCCTAAGCAT
CACTCCGGCTTCCCTTGGAAAGCGTGGAACCAGAGAGATCCAGAGGACAT
GACCGTGTGTCCAATGTTCCTTGATTTTTTAACGTCTCCGTGTTCACACT
GAATTAGAGACGACCTTGAATGGAAAGCTCAATCCTTTTTCTCTCAGAAG
AAAATTTACTTCAAAGGATATAAAAGCGATGCCATTTAGCGCCAAGCCAT
AGAAGACACATAGGCTCACACAAAATTTTCCTCGTGATTGACGCATTCCA
TTTCTCAAAAAACAAGCCAATCAGTTGACGATTTTCTCGCAGCACATTTT
GATTGGCTGATATAGCCAAAGTAGAGATTTTTCACtcttcttgatttttt
gattaTGGATGGAGgctttgtcaaaaattttcaagttaagtGAATCAATC
TacttttcaaacttcaaaaagcttttgagaaatttgactCGCTTGTTATT
TTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTGATTATGGATGGAGgctttgtcaaaaattttcaagttaagt
GAATCAATCTacttttcaaacttcaaaaagcttttgagaaatttgactcg
cttgtttttattgttttctttttggatGGAACCAGGGTTTGGTGACTACA
AATCTCTAAGATAGCCCTTCAAACAGTCTTACTTCTTCCCAAtgattttt
tagaatttctGTTGGAAAATCATATCAAAAAGGAGCCTCAATAATCTAGC
TTATGGTAATAGATAGTTGTTTTTTGTGTTCCTTCAATATCTTTTCTTTC
TCGTTTTTACTTCAGGTCTTTGATCCGGGGATGGTTGGTTCGACCGACGA
CATCCGAAGCTTAAGCTCAACGAAAAAGTTTCACGAAATGAAAGACTTGA
TCCTGGATTTGAAGGTAGGCATTATTTGAAACATCCGTATTTGGATTAAA
AGTACTATTAGTTCTTTTCAAGGTTGATGAAAACGGTGAAGGGGAATGAA
ctgatgaaaatatttatttttggacttactccggtgaaggtcctataaat
taaccgttgtctgttcgttcgtttgttgTTATTAACtcttctcaagattg
gctcattcaaattttatgatttctggcacaaaggtgcatgactataaacc
ctcgaatgtgacggagcccgattttcgaaaaaaaaagctttggggcaaat
ttgggccaaaaaacggctaaaaacggaTTTTTTGGACTtaatgaaaaatt
ggatcatttgttttttctggatttttgcacgaaagtagggtatcatcgta
gataaaagatggtttctaaacgtgttttttataagaaataaacgactaat
tttaatagatcgtcactatttgtatTCTGAATGATAAGTGTGtcaaatgc
ataaccaggtaggtccataaaagtatcacttgttgagttagttttctctt
tattttgtaGGAAGGCTCGTGTGGTCGTTCATACGAAATTTATCAGTACC
CAAATTTATGGCTAGATGGTTGGACTCCCTGTCTGGTATGACTGTTCAGC
TGCTTCCTGAATACTCCATATGCAAGTGTAGAAGATAGGAATTTACACCT
GTTGTCATGCTGCAATCGTATCAAGAAGACACAAACAGGAGAAACTTAGA
GGCAGATGAAGCGAGAAAGAAATTCTTCCTTTCCTATTGTTGTTAACTTA
AAACTATCCATACTTTCTAAATAAATCAAGAAGAAATCATTTATTACATT
AAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037004-exon-sc0001551-1491911889:29317..29602 | TCONS_00037004-exon-sc0001551-1491911889:29317..29602 | Clytia hemisphaerica | exon |
| TCONS_00037004-exon-sc0001551-1510915933:29317..29602 | TCONS_00037004-exon-sc0001551-1510915933:29317..29602 | Clytia hemisphaerica | exon |
| TCONS_00037004-exon-sc0001551-1575043694:29317..29602 | TCONS_00037004-exon-sc0001551-1575043694:29317..29602 | Clytia hemisphaerica | exon |
| TCONS_00037004-exon-sc0001551-1491911889:30343..30600 | TCONS_00037004-exon-sc0001551-1491911889:30343..30600 | Clytia hemisphaerica | exon |
| TCONS_00037004-exon-sc0001551-1510915933:30343..30600 | TCONS_00037004-exon-sc0001551-1510915933:30343..30600 | Clytia hemisphaerica | exon |
| TCONS_00037004-exon-sc0001551-1575043694:30343..30600 | TCONS_00037004-exon-sc0001551-1575043694:30343..30600 | Clytia hemisphaerica | exon |
| TCONS_00037004-exon-sc0001551-1491911889:31982..32080 | TCONS_00037004-exon-sc0001551-1491911889:31982..32080 | Clytia hemisphaerica | exon |
| TCONS_00037004-exon-sc0001551-1510915933:31982..32080 | TCONS_00037004-exon-sc0001551-1510915933:31982..32080 | Clytia hemisphaerica | exon |
| TCONS_00037004-exon-sc0001551-1575043694:31982..32080 | TCONS_00037004-exon-sc0001551-1575043694:31982..32080 | Clytia hemisphaerica | exon |
| TCONS_00037004-exon-sc0001551-1491911889:32627..32919 | TCONS_00037004-exon-sc0001551-1491911889:32627..32919 | Clytia hemisphaerica | exon |
| TCONS_00037004-exon-sc0001551-1510915933:32627..32919 | TCONS_00037004-exon-sc0001551-1510915933:32627..32919 | Clytia hemisphaerica | exon |
| TCONS_00037004-exon-sc0001551-1575043694:32627..32919 | TCONS_00037004-exon-sc0001551-1575043694:32627..32919 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001551 | supercontig | sc0001551:29317..32919 + |
Blast
The following BLAST results are available for this feature:
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