TCONS_00036993 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00036993
Unique Name	TCONS_00036993
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1885

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0001550:33500..36683-
coding sequence from alignment at sc0001550:33500..36683-

transcript sequence

>TCONS_00036993 ID=TCONS_00036993|Name=TCONS_00036993|organism=Clytia hemisphaerica|type=transcript|length=1885bp
AAAAGGAACAATCTTTTGAAAACTCGATCAAAGACAAATGCCTACATTGT
GAAATGAACTCCCCCTGGATGAATTACGGTCACATAGTGATTTTTGTCAG
TATAAAGTTACACCAGTTGATAGTGACTCAGAGGGAGAAAAGGAACACCT
AACTGACCCTATGATCATAGAAGAAGAACAGCTATCTGAAGAACGAACAT
CAGAAGTTGAATCATCAGAAGACCGAGCATCAGGTGGAGCGTTGGAAGGA
CAAACAGATGGAAGAGCGCCAGAGGGAGGAACATCAGAAGAACAGGCATT
TGCCAACTCAGTTTTTAACATTCAGTTTGTTTCGGCTGCTGAGCTTCCAC
CAAGAGAGGAGGAGATGGTTGAACCTAAAATTGATGTTGAAGCAGTTTGC
CAgaattttataattgaaaacTTAACTGAAGTCAATCCTGTTGATCTTTT
AAGAAAAGCCCAAAAAGTCCTTGTCATTGGTCGTGCTTTGGAAATTTCTA
ACCCTGAAGAAGAATTGGTAGGATTTGTAAATGACGTTTTGATCAACAGA
AATAACCTGAAAGAAACTGcattttaaagaactttcaggCTTGGAAAATA
AATCTTTAACCCTTGAGGTGCAGTTTTATGGAGAGgaGGCAAAAGACATG
GGCGGTCCACGTAAGGAATTTTTCCAATATCTGATGCAGGCAATCaataa
agaatattttgagAAAGGATTGCAAGAATACAAGAAGGAAGACTATGTCA
TAGCTGGTTTTGCGATAGgtCTTAGTATtcttcaaaatggcaaattgcCG
TACTTCTTTACCGAAGAACGGCTCACAAGTGTGTTTGGTCCAAGGTCTGA
AAAACCTTGTATACAGGAGCTACAACTCGGTCTCTCAGAAGTTGGAATTT
ATCAGATTGGAAGATCGTTACCAACGTTCCTACATTTATTTCGGGGAGGC
CTGCAACCACTTACAGTGAAACGACTCACCCAAATTATGCGTCCTGTTTT
TAAAGAAGAGGGTACAAATGCCcgtattttcgaaaataaacTGTTTGAAC
AGTTTAGGAAATACATTAAAGAGGTCGCAGCTGGTCGAAGAGGGCCTAAG
TTACAGCTTGGAACCATCTTACAGTTTTTTACTGGAATGGACGAGGAGCC
AATGCTAGGGTATGAAATTCACCCAACAATAAAATTTGACCCAGTACCTG
CTCCTGGCAAATTTACGCCAACCACACACGCTTGCATAAATCAATTGGTG
CTATTTCGTGCCACGCCAATGATTAAGCTGTTACCACAGGAAAAGTTATT
TGAAAAGTTCGATTACGCATTTTGTAATCATTACTACAGGATTGCTTAAC
CGTAGATAACTGATTCTATCCATATCAACGTTAATATTCATTCttgctgt
ttttattttgattgcaTTAAATTTACTGTTAGAATTTTACTCATAATTTG
TTCATCattcattttatcattttttttattcgTGGAAAGTTTTGAATTAG
ATTCTTCAGATCCTTGAACctgttttgactttttaaaggcATTATTGGGA
CATTTTAATAGCTGAGTTGGATATCGATTAATCGTGCAGatacatttttg
agattttcgaCATGAACGACAGGAACGGTTGTTACCCCGTCAAACAAGGG
CCAAAGCCAGAGTATATCCAATATTTGATATGGTGAAATTTTATAGGAag
atattattttgcagatgtTTTTAATAGTGTAGAGGAAAGCGAAAACTTTT
GAGAAGTATTACACATTTTTCTAAGCAACCAGATTGATAAGGCTCGAGGC
AATGAAGtagaagccgaaggctagaagtcaatctctttggtaggatttga
agtcaACAAATCCTAACAAAGTTGCGCGGTCTTGA

Run BLAST on NCBI

protein sequence of TCONS_00036993-protein

>TCONS_00036993-protein ID=TCONS_00036993-protein|Name=TCONS_00036993-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
MGGPRKEFFQYLMQAINKEYFEKGLQEYKKEDYVIAGFAIGLSILQNGKL
PYFFTEERLTSVFGPRSEKPCIQELQLGLSEVGIYQIGRSLPTFLHLFRG
GLQPLTVKRLTQIMRPVFKEEGTNARIFENKLFEQFRKYIKEVAAGRRGP
KLQLGTILQFFTGMDEEPMLGYEIHPTIKFDPVPAPGKFTPTTHACINQL
VLFRATPMIKLLPQEKLFEKFDYAFCNHYYRIA

Run BLAST on NCBI

transcript from alignment at sc0001550:33500..36683-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00036993 ID=TCONS_00036993|Name=TCONS_00036993|organism=Clytia hemisphaerica|type=transcript|length=3184bp|location=Sequence derived from alignment at sc0001550:33500..36683- (Clytia hemisphaerica)
AAAAGGAACAATCTTTTGAAAACTCGATCAAAGACAAATGCCTACATTGT
GAAATGAACTCCCCCTGGATGAATTACGGTCACATAGTGATTTTTGTCAG
TATAAAGTTACACCAGTTGATAGTGACTCAGAGGGAGAAAAGGAACACCT
AACTGACCCTATGATCATAGAAGAAGAACAGCTATCTGAAGAACGAACAT
CAGAAGTTGAATCATCAGAAGACCGAGCATCAGGTGGAGCGTTGGAAGGA
CAAACAGATGGAAGAGCGCCAGAGGGAGGAACATCAGAAGAACAGGCATT
TGCCAACTCAGTTTTTAACATTCAGTTTGTTTCGGCTGCTGAGCTTCCAC
CAAGAGAGGAGGAGATGGTTGAACCTAAAATTGATGTTGAAGCAGTTTGC
CAGAATTTTATAATTGAAAACTTAACTGAAGTCAATCCTGTTGATCTTTT
AAGAAAAGCCCAAAAAGTCCTTGTCATTGGTCGTGCTTTGGAAATTTCTA
ACCCTGAAGAAGAATTGGTAGGATTTGTAAATGACGTTTTGATCAACAGA
AATAACCTGAAAGAAACTGCATTTTAAAGAACTTTCAGGCTTGGAAAATA
AATCTTTAACCCTTGAGGTGCAGTTTTATGGAGAGGTAAATTATTGTTTG
GAATCCAAACTAATAAATTTGTTTTTGTTGGTATTATAATGTGCTATTAA
CAGGTTTTAAGAAAATTTAAAGACGACATCGAGGATTTCTTTGTTGGAAT
AGAAGCTATTAAATGCACTATCAGTGAAACCTGCCTGTTTAATGATTTGC
TTGTAAAATTATTTTTAGGAGGCAAAAGACATGGGCGGTCCACGTAAGGA
ATTTTTCCAATATCTGATGCAGGCAATCAATAAAGAATATTTTGAGAAAG
GATTGCAAGAATACAAGAAGGAAGACTATGTCATAGCTGGTTTTGCGATA
GGTATTGTATGCTTCTTTGGGATAAGCACGAGGTGAAGAGTACATGCTTT
TTTATAAGAATAGATTCCATAAGAATATCAGGGTGAAAATTGGTTAAATC
GTGAAAAAACCATAATACCTCCAGGGTGAGTTTCATAGATTTTGGTCATT
TTCCATTTGAAAACAAAATTGGTTCAAATTTATAGTAATTTTTGAAATTC
TGACAAATTTGGTAGTTTTTTCCATATCAAAGCTTTCAAGACATTGTTTC
ATTGAATCAGCTCTTATTGAAAAATAGGCTTTGATTGAGTAGACGAGGGA
TTTGAAAAACTTTGTTTGAAAATTGATAAAAATTAAGAATACAATTTCTC
AAATTATCTGGAAAATTTTCACATTTTTTTTCTCGAATTACCATTTTTTT
GGCAGTTAATACACTATATTTTCTTTTGCTATTCAGAAATTTATCCTGGG
ATAACTAAAATGTATTGAAATTAGAAACTATTAAATATTTTACTTTTTAG
GTCTTAGTATTCTTCAAAATGGCAAATTGCCGTACTTCTTTACCGAAGAA
CGGCTCACAAGTGTGTTTGGTCCAAGGTCTGAAAAACCTTGTATACAGGA
GCTACAACTCGGTCTCTCAGAAGTTGGAATTTATCAGGTCAGTGTTTGGC
CAAATTTAAATGTACCTATACTTTCTGTTCTGGAACTTATTCTAGAAGGT
TGAACTTATCATTTTCTAATTTTGACAGATTTTGGTAGCATTTTTATCAT
GAACAAGTTGTTTTAATTCTAACGAAAACCTTTTTTACAATTCACAAAAA
ATGTCCAATGCGACCAAATTTAACTCTCGTCGATTTTTCTTTACAGATTG
GAAGATCGTTACCAACGTTCCTACATTTATTTCGGGGAGGCCTGCAACCA
CTTACAGTGAAACGACTCACCCAAATTATGCGTCCTGTTTTTAAAGAAGA
GGGTACAAATGCCCGTATTTTCGAAAATAAACTGTTTGAACAGTTTAGGA
AATACATTAAAGAGGTCGCAGGTAAATATGAACTATAGTTTGTATACCAA
TCAGTGCCAATAGACCTTTTAATAAATTACGTCACGAACATCACTTGCCT
CGTTTTCAAACAATGACCATTGTGGCTATGTCCATTGAGACAAAATGATT
TTTTCATGAATAAAAAGTAGTTTTAATGAACTCCGCGTGGGAGTTAATCA
CCGTGGCAATGAAGTCAAAACGAGGCAAGTGATGTGAACTTTGAAAAACA
TTTAAAAATTATGAAATTGAAAGTGATTTATATCTCGAGACAGTAAAATT
TTCAGACCACAGCTCTGACCTTTTTTCATTGACATCTTTCGAGCAGAGGT
GAACAAAAGATAACGACTTTCTACTATTTTCTGACTTCTCGCTTGACTCT
TTTTTTTAAATAACACTTTTTATTTACAGCTGGTCGAAGAGGGCCTAAGT
TACAGCTTGGAACCATCTTACAGTTTTTTACTGGAATGGACGAGGAGCCA
ATGCTAGGGTATGAAATTCACCCAACAATAAAATTTGACCCAGTACCTGC
TCCTGGCAAATTTACGCCAACCACACACGCTTGCATAAATCAATTGGTGC
TATTTCGTGCCACGCCAATGATTAAGCTGTTACCACAGGAAAAGTTATTT
GAAAAGTTCGATTACGCATTTTGTAATCATTACTACAGGATTGCTTAACC
GTAGATAACTGATTCTATCCATATCAACGTTAATATTCATTCTTGCTGTT
TTTATTTTGATTGCATTAAATTTACTGTTAGAATTTTACTCATAATTTGT
TCATCATTCATTTTATCATTTTTTTTATTCGTGGAAAGTTTTGAATTAGA
TTCTTCAGATCCTTGAACCTGTTTTGACTTTTTAAAGGCATTATTGGGAC
ATTTTAATAGCTGAGTTGGATATCGATTAATCGTGCAGATACATTTTTGA
GATTTTCGACATGAACGACAGGAACGGTTGTTACCCCGTCAAACAAGGGC
CAAAGCCAGAGTATATCCAATATTTGATATGGTGAAATTTTATAGGAAGA
TATTATTTTGCAGATGTTTTTAATAGTGTAGAGGAAAGCGAAAACTTTTG
AGAAGTATTACACATTTTTCTAAGCAACCAGATTGATAAGGCTCGAGGCA
ATGAAGTAGAAGCCGAAGGCTAGAAGTCAATCTCTTTGGTAGGATTTGAA
GTCAACAAATCCTAACAAAGTTGCGCGGTCTTGA

Coding sequence (CDS) from alignment at sc0001550:33500..36683-

>TCONS_00036993 ID=TCONS_00036993|Name=TCONS_00036993|organism=Clytia hemisphaerica|type=CDS|length=2808bp|location=Sequence derived from alignment at sc0001550:33500..36683- (Clytia hemisphaerica)
CTGGTCGAAGAGGGCCTAAGTTACAGCTTGGAACCATCTTACAGTTTTTT
ACTGGAATGGACGAGGAGCCAATGCTAGGGTATGAAATTCACCCAACAAT
AAAATTTGACCCAGTACCTGCTCCTGGCAAATTTACGCCAACCACACACG
CTTGCATAAATCAATTGGTGCTATTTCGTGCCACGCCAATGATTAAGCTG
TTACCACAGGAAAAGTTATTTGAAAAGTTCGATTACGCATTTTGTAATCA
TTACTACAGGATTGCTTAAATTGGAAGATCGTTACCAACGTTCCTACATT
TATTTCGGGGAGGCCTGCAACCACTTACAGTGAAACGACTCACCCAAATT
ATGCGTCCTGTTTTTAAAGAAGAGGGTACAAATGCCCGTATTTTCGAAAA
TAAACTGTTTGAACAGTTTAGGAAATACATTAAAGAGGTCGCAGGTCTTA
GTATTCTTCAAAATGGCAAATTGCCGTACTTCTTTACCGAAGAACGGCTC
ACAAGTGTGTTTGGTCCAAGGTCTGAAAAACCTTGTATACAGGAGCTACA
ACTCGGTCTCTCAGAAGTTGGAATTTATCAGATGGGCGGTCCACGTAAGG
AATTTTTCCAATATCTGATGCAGGCAATCAATAAAGAATATTTTGAGAAA
GGATTGCAAGAATACAAGAAGGAAGACTATGTCATAGCTGGTTTTGCGAT
AGCTGGTCGAAGAGGGCCTAAGTTACAGCTTGGAACCATCTTACAGTTTT
TTACTGGAATGGACGAGGAGCCAATGCTAGGGTATGAAATTCACCCAACA
ATAAAATTTGACCCAGTACCTGCTCCTGGCAAATTTACGCCAACCACACA
CGCTTGCATAAATCAATTGGTGCTATTTCGTGCCACGCCAATGATTAAGC
TGTTACCACAGGAAAAGTTATTTGAAAAGTTCGATTACGCATTTTGTAAT
CATTACTACAGGATTGCTTAAATTGGAAGATCGTTACCAACGTTCCTACA
TTTATTTCGGGGAGGCCTGCAACCACTTACAGTGAAACGACTCACCCAAA
TTATGCGTCCTGTTTTTAAAGAAGAGGGTACAAATGCCCGTATTTTCGAA
AATAAACTGTTTGAACAGTTTAGGAAATACATTAAAGAGGTCGCAGGTCT
TAGTATTCTTCAAAATGGCAAATTGCCGTACTTCTTTACCGAAGAACGGC
TCACAAGTGTGTTTGGTCCAAGGTCTGAAAAACCTTGTATACAGGAGCTA
CAACTCGGTCTCTCAGAAGTTGGAATTTATCAGATGGGCGGTCCACGTAA
GGAATTTTTCCAATATCTGATGCAGGCAATCAATAAAGAATATTTTGAGA
AAGGATTGCAAGAATACAAGAAGGAAGACTATGTCATAGCTGGTTTTGCG
ATAGCTGGTCGAAGAGGGCCTAAGTTACAGCTTGGAACCATCTTACAGTT
TTTTACTGGAATGGACGAGGAGCCAATGCTAGGGTATGAAATTCACCCAA
CAATAAAATTTGACCCAGTACCTGCTCCTGGCAAATTTACGCCAACCACA
CACGCTTGCATAAATCAATTGGTGCTATTTCGTGCCACGCCAATGATTAA
GCTGTTACCACAGGAAAAGTTATTTGAAAAGTTCGATTACGCATTTTGTA
ATCATTACTACAGGATTGCTTAAATTGGAAGATCGTTACCAACGTTCCTA
CATTTATTTCGGGGAGGCCTGCAACCACTTACAGTGAAACGACTCACCCA
AATTATGCGTCCTGTTTTTAAAGAAGAGGGTACAAATGCCCGTATTTTCG
AAAATAAACTGTTTGAACAGTTTAGGAAATACATTAAAGAGGTCGCAGGT
CTTAGTATTCTTCAAAATGGCAAATTGCCGTACTTCTTTACCGAAGAACG
GCTCACAAGTGTGTTTGGTCCAAGGTCTGAAAAACCTTGTATACAGGAGC
TACAACTCGGTCTCTCAGAAGTTGGAATTTATCAGATGGGCGGTCCACGT
AAGGAATTTTTCCAATATCTGATGCAGGCAATCAATAAAGAATATTTTGA
GAAAGGATTGCAAGAATACAAGAAGGAAGACTATGTCATAGCTGGTTTTG
CGATAGCTGGTCGAAGAGGGCCTAAGTTACAGCTTGGAACCATCTTACAG
TTTTTTACTGGAATGGACGAGGAGCCAATGCTAGGGTATGAAATTCACCC
AACAATAAAATTTGACCCAGTACCTGCTCCTGGCAAATTTACGCCAACCA
CACACGCTTGCATAAATCAATTGGTGCTATTTCGTGCCACGCCAATGATT
AAGCTGTTACCACAGGAAAAGTTATTTGAAAAGTTCGATTACGCATTTTG
TAATCATTACTACAGGATTGCTTAAATTGGAAGATCGTTACCAACGTTCC
TACATTTATTTCGGGGAGGCCTGCAACCACTTACAGTGAAACGACTCACC
CAAATTATGCGTCCTGTTTTTAAAGAAGAGGGTACAAATGCCCGTATTTT
CGAAAATAAACTGTTTGAACAGTTTAGGAAATACATTAAAGAGGTCGCAG
GTCTTAGTATTCTTCAAAATGGCAAATTGCCGTACTTCTTTACCGAAGAA
CGGCTCACAAGTGTGTTTGGTCCAAGGTCTGAAAAACCTTGTATACAGGA
GCTACAACTCGGTCTCTCAGAAGTTGGAATTTATCAGATGGGCGGTCCAC
GTAAGGAATTTTTCCAATATCTGATGCAGGCAATCAATAAAGAATATTTT
GAGAAAGGATTGCAAGAATACAAGAAGGAAGACTATGTCATAGCTGGTTT
TGCGATAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_021856	XLOC_021856	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00036993-protein	TCONS_00036993-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001550	supercontig	sc0001550:33500..36683 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.44453	0.412845	0.239676	0.234486	2.42644	2.36856	1.22467	1.75826	0.517313	1.28152	1.71569	0.789479	0.985477	1.44471	1.22764	1.47051	1.18442	0.993542	1.13145	3.97942	1.06426	0.868508	0.558231	0.772303	0.431818	0.851908	2.61249	5.20413	1.52717	0.694191

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000569	HECT_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0004842	ubiquitin-protein transferase activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0004842	ubiquitin-protein transferase activity

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00036993 vs. Swiss-Prot (Human)

BLAST of TCONS_00036993 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00036993 (transcript) - C. hemisphaerica